BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19650.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479482 jgi|Araly1|479482|fgenesh2_kg.3__2183__AT3G19650.1 1247 0.0
Ahg938863 jgi|Araly1|938863|scaffold_503054.1 492 2e-138
Ahg925000 jgi|Araly1|925000|scaffold_200561.1 161 8e-39
> Ahg479482 jgi|Araly1|479482|fgenesh2_kg.3__2183__AT3G19650.1
Length=937
Score = 1247 bits (675), Expect = 0.0
Identities = 871/961 (91%), Gaps = 31/961 (3%)
Strand=Plus/Plus
Query 7 AGCCCTAAAATTTCTTCGGTG-AGAGAAACATGTCGACGAGGCGAGAAAGCAGAGATTCA 65
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCCCTAAAATTTCATCGGAGAAGAGAAACATGTCGACGAGGCGAGAAAGCAGAGATTCA 60
Query 66 GACCCTAGACGTCACCGTTCTAGAATCGATCGCGAACCCAGCCCTAAGAGATCAAGAAGA 125
||||||||| | || ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GACCCTAGAAGACAGCGTTCAAGAATCGATCGCGAACCCAGCCCCAAGAGATCAAGGAGA 120
Query 126 GATGGCAAACCTGAAGCTGAACGAGTTCTGAGTAAGAAGGATTTGGATGTTAGAGATGGT 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 121 GATGGCAAACCTGAAGCTGAACGAGTTCTGATTAAGAAGGATTTGGATGTTAGGGAGGGT 180
Query 186 ACTGACACTGAGAA-AAACTCACGTCAGTCTTTGAGAGATGCT-C-CA-TTGGAACTTGA 241
||||| | ||||| |||| |||||||||| |||||||||||| | | ||||||| |||
Sbjct 181 ACTGATGCAGAGAAGAAAC-CACGTCAGTCCTTGAGAGATGCTGCGCCGTTGGAACCTGA 239
Query 242 TGCTCATGGTTCGAGAAAAGACAGTGAGAA-GAAGCACTCTGGACATCATGAGACCACCA 300
|||||||||||||| ||||||||||| ||| ||||||||| || ||||||||||||||||
Sbjct 240 TGCTCATGGTTCGAAAAAAGACAGTG-GAAAGAAGCACTCCGGGCATCATGAGACCACCA 298
Query 301 AAGCA-GCTCCCCATCTGTCACAAGTACCTCGTTCTAGACCATATTCTCAGCATGATGAT 359
|| || ||| ||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 299 AA-CAAGCTTCCCATCTATCTCAAGTGCCTCGTTCTAGACCATATTCTCAGCATGATGAT 357
Query 360 CGTCGTAGTGATGGAAAAGTTGATAGAAGACCAACTTCTGTGAGAGGATCGTGGAGAAGT 419
| || |||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct 358 CTTCCTAGTGATGGAAAAGGTGACAGAAGACCAACTTCTGAGAGAGGATCTTGGAGAAGT 417
Query 420 TCAAGAGATCAGAGTAACCGAAGAGCTGGAGATGATGAGAAGTCACAGCATCGTAAAGAC 479
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 418 TCAAGAGATAAGAGTAACCGAAGAGGTGGAGATGATGACAAGTCACAGCATCGTAAAGAC 477
Query 480 GAAGACAAAAGCTCATGGCGACATGATAGGTTCCGTGAGAGTGATGACACCCAAGGAGCA 539
|||||||||||||| |||||||||||||| | | | |||||||||||||
Sbjct 478 GAAGACAAAAGCTCGTGGCGACATGATAG---C-G--A---------CACCCAAGGAGCA 522
Query 540 CTCTCTAGGAAACGACCAGCCTTCAGGGAGAAGAAGATTGCAGAGGAAACTGGGAACAAC 599
||||||||||||||||| |||||||||||||||||||| |||||| || || |||
Sbjct 523 CTCTCTAGGAAACGACCGGCCTTCAGGGAGAAGAAGATCACAGAGG-----GG-AATAAC 576
Query 600 ACAGACAGAACAAGAACTGAGGATGGAAAAGACACTAATCTAAACAATCGCAGACAGAAC 659
||||| ||||||||||||||||| |||||||| || ||||||||| || |||||||||||
Sbjct 577 ACAGAGAGAACAAGAACTGAGGAGGGAAAAGATACAAATCTAAACTATGGCAGACAGAAC 636
Query 660 GAGAGGAACTGGAGGAGCAATACGCATTCAGAAAGACATGAGAGACCAGCAATGGGAAGA 719
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 637 GAGAGAAACTGGAGGAGAAATATGCATTCAGAAAGACATGAGAGACCAGCAATGGGAAGA 696
Query 720 GACAGAGTGTGGAACAGAGATGATGAAAGAGGCGCGGGAAGCAGACAGAGTTATCAAGCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 697 GACAGAGTGTGGAACAGAGATGATGAAAGAGGCGCGGGAAGCAGACAGAGTTATCGAGTT 756
Query 780 GATAGAGACAGATTCAACGGCAATGGGCGAAGTGGGTTTAGCGGAAGCTGGACAAGGAAT 839
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 757 GATAGAGACAGATTCCACGGCAATGGGCGAAGTGGGTTTAGCGGAAGCTGGGCAAGGAAT 816
Query 840 GAGAAGAAATGGGACCATGACTTGTTCGATGAGGCGAACAAGAGTCCAGCTAAAGCCACC 899
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 817 GAGAAGAAATGGGACCATGACTTGTTCGAGGAGGCGAACAAGAGTCCAGCCAAAGCCACT 876
Query 900 GAGGAAGAACAGATAGCTAAAGTTGAAGCTTTGTTGGCTTCTTGAAGCTGCTTATGTCAT 959
|||||||||||||| || |||||||||||||||||||||||||||||| || ||||| ||
Sbjct 877 GAGGAAGAACAGATTGCAAAAGTTGAAGCTTTGTTGGCTTCTTGAAGCAGCATATGTTAT 936
Query 960 G 960
|
Sbjct 937 G 937
> Ahg938863 jgi|Araly1|938863|scaffold_503054.1
Length=711
Score = 492 bits (266), Expect = 2e-138
Identities = 315/339 (93%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 626 AAAAGACACTAATCTAAACAATCGCAGACAGAACGAGAGGAACTGGAGGAGCAATACGCA 685
||||||||| ||||||||| || ||||||||||||| || |||||||||||||||| |||
Sbjct 371 AAAAGACACAAATCTAAACTATGGCAGACAGAACGACAGAAACTGGAGGAGCAATATGCA 430
Query 686 TTCAGAAAGACATGAGAGACCAGCAATGGGAAGAGACAGAGTGTGGAACAGAGATGATGA 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTCAGAAAGACATGAGAGACCAGCAATGGGAAGAGACAGAGTGTGGAACAGAGATGATGA 490
Query 746 AAGAGGCGCGGGAAGCAGACAGAGTTATCAAGCTGATAGAGACAGATTCAACGGCAATGG 805
||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 491 AAGAGGCGCGGGAAGCAGACAGAGTTATCGAGTTGATAGAGACAGATTCCACGGCAATGG 550
Query 806 GCGAAGTGGGTTTAGCGGAAGCTGGACAAGGAATGAGAAGAAATGGGACCATGACTTGTT 865
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 551 GCGAAGTGGGTTTAGGGGAAGCTGTACAAGGAATGAGAAGAAATGGGACCATGACTTGTT 610
Query 866 CGATGAGGCGAACAAGAGTCCAGCTAAAGCCACCGAGGAAGAACAGATAGCTAAA-GTTG 924
||| |||||||||||||||||||| |||| ||| |||||||||||| | || ||| ||||
Sbjct 611 CGAGGAGGCGAACAAGAGTCCAGCCAAAGACACTGAGGAAGAACAGGTTGC-AAATGTTG 669
Query 925 AAGCTTTGTTGGCTTCTTGAAGCTGCTTATGTCATGGTT 963
|| |||||||||||||| ||||||| ||||| ||||||
Sbjct 670 AATTTTTGTTGGCTTCTTAAAGCTGCATATGTTATGGTT 708
Score = 148 bits (80), Expect = 6e-35
Identities = 107/119 (90%), Gaps = 5/119 (4%)
Strand=Plus/Plus
Query 175 TTAGAGATGGTACTGACACTGAGAA-AAACTCACGTCAGTCTTTGAGAGATGCT---CCA 230
|||||||||||||||| | ||||| |||| |||||||||| |||||||||||| ||
Sbjct 178 TTAGAGATGGTACTGATGCAGAGAAGAAAC-CACGTCAGTCCTTGAGAGATGCTGCGCCG 236
Query 231 TTGGAACTTGATGCTCATGGTTCGAGAAAAGACAGTGAGAAGAAGCACTCTGGACATCA 289
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 TTGGAACCTGATGCTCATGGTTCGAGAAAAGACAGTGAAAAGAAGCACTCTGGACATCA 295
> Ahg925000 jgi|Araly1|925000|scaffold_200561.1
Length=204
Score = 161 bits (87), Expect = 8e-39
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 401 GAGAGGATCGTGGAGAAGTTCAAGAGATCAGAGTAACCGAAGAGCTGGAGATGATGAGAA 460
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||
Sbjct 58 GAGAGGATCGTGGAGAAGTTCAAGAGATAAGAGTAACCAAAGAGGTGGAGATGATGACAA 117
Query 461 GTCACAGCATCGTAAAGACGAAGACAAAAGCTCATGGCGACATGA 505
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct 118 ATCACAGCATCGTAAAGACGAAGACAAAAGCTCGTGGCGACATGA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5