BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19660.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479483 jgi|Araly1|479483|fgenesh2_kg.3__2184__AT3G19660.1         534    2e-151


> Ahg479483 jgi|Araly1|479483|fgenesh2_kg.3__2184__AT3G19660.1
Length=439

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 401/452 (89%), Gaps = 19/452 (4%)
 Strand=Plus/Plus

Query  2    AAAGCGTTACGTTTTAGAGTAAAAAGATAAAAACTAACGCATAAATATGTCAGAGGAGCT  61
            ||||||| |||||||||||| ||||||| ||||| ||||||| || ||||| ||||||||
Sbjct  1    AAAGCGTAACGTTTTAGAGTTAAAAGATCAAAACAAACGCAT-AA-ATGTCTGAGGAGCT  58

Query  62   GCAACTACAAAAATTG-AA---TCGTCTTTCTTAGTTATTTAGGGTTCTTTAGAGAAGCA  117
             | |||||||||| || ||   || |||||||||||||||||||||||||||||||| ||
Sbjct  59   ACGACTACAAAAAGTGAAATCTTCTTCTTTCTTAGTTATTTAGGGTTCTTTAGAGAATCA  118

Query  118  AGAAGGAGAAGGAGAAGATGGGATTACAGTTGGAGAGTTTGATGGAGACGATAAAGTCAA  177
            ||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  119  AGAAGAAGAAGAAGAACATGGGATTACAGTTGGAGAGCTTGATGGAGACGATAAAGTCAA  178

Query  178  AGGTGAGTTTGCTAAGGAAGAAGAAGAAAACTTACATCAAAATGGACAAAAGCTCCAGCG  237
            ||||| ||||| | ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  179  AGGTGGGTTTGTTGAGGAAGAAGAAGAAACCTTACATCAAAATGGATAAAAGCTCCAGCG  238

Query  238  TCAGAGTCGCCATCCGTCGTAAGAAGACTAGAGATCTCATCGATAAGACCTTAAAGGTCG  297
            ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  239  TCAGAGTTGCGATCCGTCGTAAGAAGACTAGAGATCTCATCGATAAGACCTTGAAGGTTG  298

Query  298  CTGATCGTCCTGGCAAACGAACTCTTTTCTAATAATACTTCTTCTTCTTCttttttttct  357
            ||||||| |||||||| ||||||||||||| |||| ||||||| || ||         | 
Sbjct  299  CTGATCGCCCTGGCAAGCGAACTCTTTTCTGATAAAACTTCTT-TTATTG--------C-  348

Query  358  ctcatattttgccat--cattttttgttgttcttcgttcagtgatttggtgtttttgATT  415
            |||||||||||| ||  ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  349  CTCATATTTTGC-ATGTCATTTTTTGTTCTTCTTCCTTCAGTGATTTGGTGTTTTTGATT  407

Query  416  CAGGAGATCATGTTTGTGATAATATGTATAGT  447
            |||||||||| |||||||||||||||||||||
Sbjct  408  CAGGAGATCAAGTTTGTGATAATATGTATAGT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5