BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19663.1

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929866 jgi|Araly1|929866|scaffold_302323.1                        130    3e-30


> Ahg929866 jgi|Araly1|929866|scaffold_302323.1
Length=541

 Score =  130 bits (70),  Expect = 3e-30
 Identities = 129/155 (83%), Gaps = 14/155 (9%)
 Strand=Plus/Minus

Query  1    ATGGAGAAGCCGGAGATGTTGCA-----CGGACCGCTTGGTACCAATCTTTTCGTTCCGA  55
            |||||||||  ||||||||||||     |||||||||||||||||||||||||||||| |
Sbjct  327  ATGGAGAAGGTGGAGATGTTGCATTGTTCGGACCGCTTGGTACCAATCTTTTCGTTCCAA  268

Query  56   TATCTGCTCTTGAAAAT-GATGAAGA-GGATGGAGAT-TTTGCATCACTTACAACACTTG  112
            ||| |||||| |||||  |||| ||| || | ||||| ||| |||| ||||| |||||||
Sbjct  267  TATTTGCTCT-GAAAAACGATGGAGAAGG-TAGAGATGTTT-CATCGCTTACGACACTTG  211

Query  113  GACCTACTCTCCTTGCTTTAT--TTTG-TACATAA  144
            || ||||||||||||||| |   |||| |||||||
Sbjct  210  GATCTACTCTCCTTGCTTCAACATTTGGTACATAA  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 4620779581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5