BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19670.1
Length=3159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929867 jgi|Araly1|929867|scaffold_302324.1 2795 0.0
> Ahg929867 jgi|Araly1|929867|scaffold_302324.1
Length=2928
Score = 2795 bits (1513), Expect = 0.0
Identities = 1686/1771 (95%), Gaps = 6/1771 (0%)
Strand=Plus/Plus
Query 1233 TCAAGGTAGTGGGAGTGGACCAAAAGAAAGCCAAAAACCTATGGTTGAAAGTGAAAAG-G 1291
|||||||||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| |
Sbjct 1158 TCAAGGTAGTGGGACTGGGCCAGAAGAAAGCCAAAAACCTATGGTGGAAAGTG-AAAGAG 1216
Query 1292 TTGAGAGCCAAACAGAAGAAAAACAAATTCATCAAGAGAGTTTTTCCTTTAACAATAAAT 1351
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1217 TTGAGAGCCAAACGGAAGAAAAACAAATTAATCAAGAGAATTTTTCCTTTAACAATAAAT 1276
Query 1352 TGGAAGCTGTGGATGTCTTCAAATCACTTTTGAAATCCGCCAAAGTTGGATCTGACTGGA 1411
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1277 CGGAAGCTGGGGATGTCTTCAAATCACTTTTGAAATCTGCCAATGTTGGATCTGACTGGA 1336
Query 1412 CATGGGAACAGGCCATGAGAGAAATTATTAATGACAAAAGATACGGTGCTCTGAGGACAC 1471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1337 CATGGGAACAGGCCATGAGAGAAATTATTAATGACAGAAGATACGGTGCTCTGAGGACAC 1396
Query 1472 TTGGAGAGCGGAAGCAAGCCTTCAATGAGTTCTTACTCCAAACGAAACGAGCAGCTGAGG 1531
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1397 TTGGAGAGCGGAAGCAAGCCTTCAATGAGTTCTTACTTCAAACGAAAAGAGCAGCTGAGG 1456
Query 1532 AGGAAAGGCTAGCCAGACAGAAAAAACTGTATGAAGATTTTAAAAGGATGTTAGAGGAAT 1591
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1457 AGGAAAGGCTAGCCAGACAGAGAAAACGGTATGAAGATTTTAAAAGGATGTTAGAGGAAT 1516
Query 1592 GCGTGGAGCTTACTCCTTCTACTCGGTGGAGTAAGACTGTGACAATGTTTGAAGACGATG 1651
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1517 GCGTGGAACTTACTCCTTCTACTCGGTGGAGTAAGGCTGTGACAATGTTTGAAGCCGATG 1576
Query 1652 AGCGTTTCAAAGCTCTTGAACGAGAAAAAGACCGTCGTAATATTTTTGAAGATCATGTCA 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 AGCGTTTCAAAGCTCTTGAACGAGAAAAAGACCGTCGTAATATTTTTGAAGATCATGTCA 1636
Query 1712 GTGAGCTAAAAGAGAAGGGGCGGGTGAAAGCTCTTGAGGATCGCAAGCGGAACATAATTG 1771
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GTGAGCTAAAAGAGAAGGAGCGGGTGAAAGCTCTTGAGGATCGCAAGCGGAACATAATTG 1696
Query 1772 AATACAAAAGATTTTTGGAATCTTGCAATTTCATCAAGCCAAATAGTCAATGGCGCAAAG 1831
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1697 AATACCGAAGATTTTTGGAATCTTGCAATTTCATCAAGCCTAATAGTCAATGGCGCAAAG 1756
Query 1832 TTCAGGACCGCTTAGAAGTGGATGAAAGATGTTCGCGTCTCGAGAAAATTGATCAGCTAG 1891
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1757 TTCAGGACCGCTTAGAAGTGGATGAAAGATGTTCACGTCTTGAGAAAATTGATCAGCTAG 1816
Query 1892 AAATCTTTCAGGAGTATCTGCGTGATCTggaaagagaagaagaggagaaaaagaagatac 1951
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1817 AAATCTTTCAGGAGTATCTGCGTGATCTGGAGAGAGAAGAAGAGGAGAAAAAGAAGATAC 1876
Query 1952 agaaggaggaactcaaaaaagtagagcgaaagCACCGTGATGAGTTCCATGGGCTGTTAG 2011
| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||
Sbjct 1877 AAAAGGAGGAACTCAAAAAAGCAGAGCGAAAGCATCGTGATGAGTTCCGTGGGCTGATAG 1936
Query 2012 ATGAACATATTGCAACAGGAGAGCTTACTGCCAAAACTATATGGCGTGATTATTTAATGA 2071
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1937 AGGAACATATTGCAACAGGAGAGCTTACTGCCAAAACTGTATGGCGTGATTATTTAATGA 1996
Query 2072 AGGTCAAGGATTTACCAGTATATTCAGCAATTGCGTCAAACTCCTCTGGAGCTACTCCAA 2131
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1997 AGGTCAAAGATTTACCAGTATATTCAGCAATTGCGTCGAACTCCTCTGGAGCTACTCCAA 2056
Query 2132 AAGACTTATTTGAAGATGCTGTTGAGGATTTGaaaaaaaGGGACCACGAGCTCAAGTCTC 2191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2057 AAGACTTATTTGAAGATGCTGTTGAGGATTTGAAAAAAAGGTACCACGAGCTCAAGTCTC 2116
Query 2192 AGATAAAGGATGTATTGAAATTGAGAAAAGTAAATTTATCCGCTGGGTCAACATTTGATG 2251
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 2117 AGATAAAGGATGTATTGAAATTGAGAAAGGTAAATTTATCCGCTGGATCAGCATTTGATG 2176
Query 2252 AGTTCAAGGTTTCTATTTCCGAGGATATTGGTTTTCCTCTTATTCCTGACGTTAGACTAA 2311
|||||||||| || ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2177 AGTTCAAGGTCTCAATTTCCGAGGATATTGGTTTTCCACCTATTCCTGACGTTAGACTAA 2236
Query 2312 AGTTAGTCTTTGATGATTTGCTGGAAAGGGCAAAGGAGAAGGAAGAAAAAGAAGCCAGAA 2371
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2237 AGGTAGTCTTTGATGATTTGCTGGAAAGGGCAAAGGAGAAGGAAGAAAAGGAAGCCAGAA 2296
Query 2372 AACAGACACGGCAGACTGAAAAGTTGGTTGATATGCTTCGCTCCTTCAAGGATATAACTG 2431
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2297 AACAGACACGGCAGACTGAAAAGTTGGTGGATATGCTTCGCTCCTTCAAGGATATAACTG 2356
Query 2432 CCTCTTCATCCTGGGAGGAATTAAAGCATCTTGTTGAGGGTAGTGAAAAATGCAGTACTA 2491
|||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||
Sbjct 2357 CCTCTTCATCATGGGAGGAATCAAAACATCTTGTTGAAGGTAGTGAAAAATGCTGTACTA 2416
Query 2492 TTGGTGATGAGAGCTTTCGGAAGC-GCTGTTTCGAAGATTACGTTTCACTCCTTAAAGAG 2550
|||| ||||||||||| ||||||| | ||||||||||||||||||||||| ||||||
Sbjct 2417 TTGGCGATGAGAGCTTCCGGAAGCAG-ACATTCGAAGATTACGTTTCACTCCTCAAAGAG 2475
Query 2551 CAATCAAATAGGATCAAACAGAACAAGAAGGTACCCGAGGATGTGAGAGAGGAACATGAC 2610
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 CAATCAAAAAGGATCAAACAGAACAAGAAGGTACCCGAGGATGTGAGAGAGGAACATGAC 2535
Query 2611 AAGGGGAGAGATAAATACGGAAGAGAGAAGGACAGAGTGCGAGAAAGAGACAGTGACGAT 2670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2536 AAGGGGAGAGATAAATACGGAAGAGAGAAGGACAGAGTGCGAGAAAGAGACAGTGATGAT 2595
Query 2671 CATCATAAGAAAGGTGCAGCTGGTAAATACAACCATGATATGAATGAACCCCATGGAAAA 2730
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2596 CATCATAAGAAAGGTGCAGCTGGTAATTACAACCATGATATGAATGATTCCCATGGAAAA 2655
Query 2731 GAACGTAGGAGATCAGGAAGAGATAGCCATAACAGACATAGAGAAAGACATACTAGTGTG 2790
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2656 GAACGTAGAAGATCAGGAAGAGATAGCCATAACCGACATCGAGAAAGACATACTAGTGTG 2715
Query 2791 AAGGAAAATGACACAGACCATTTCAAAGAATCCCATAAAGCTGGCGGTGGGCATAAGAAA 2850
||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 2716 AAGGAAAATGACATAGACCATTTCAAAGAATCCCAAAAAGCTGGTGGTGGTCACAAGAAA 2775
Query 2851 TCAAGACATCAGCGAGGCTGGGTCTCCGAAGCAGAGGTTGAGGGCAAGGA-AAAGCGGCG 2909
||||||||||||||||| | |||| ||||||||||||||||||||| ||| |||||||||
Sbjct 2776 TCAAGACATCAGCGAGGTTTGGTCCCCGAAGCAGAGGTTGAGGGCA-GGATAAAGCGGCG 2834
Query 2910 TAGAAAAGAAGAAGCGAGGGAGCACACAAAGGAAGAGGAGCTTGAAGATGGAGAATGTGG 2969
||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2835 TAGAAAAGAGGAAGAGAGTGAGCACACAAAGGAAGAGGAGCTTGAAGATGGAGAATGTGG 2894
Query 2970 TCGGTATTGAAAATCTTTACACCCGGTTAAT 3000
| ||||||||||||| ||||||| |||||||
Sbjct 2895 TAGGTATTGAAAATCGTTACACCAGGTTAAT 2925
Score = 1851 bits (1002), Expect = 0.0
Identities = 1094/1139 (96%), Gaps = 4/1139 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATAACCATCAATATCCTGGCATTCAGCCATTCCAGCATCCTAATGCTAGCTCC 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGCTAATAACCATCAGTATCCTGGCATTCAGCCATTCCAGCATCCTAATGCTAGCTCC 81
Query 61 ATAGATTTACCCCGAGGCTTTGCTCCACCCATGAACTTTCAGTTTCTTCCTACCATTCAA 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 82 ATAGATTTACCCCGAGGCTTTGCTCCACCCATGAACTTTCAGTTTCATCCTACCATTCAA 141
Query 121 GCTCCTCAGTCTGAGCAAGTTGCTCGATTGTCTTCTCAGAACTTTCAATGTGTTGGCAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GCTCCTCAGTCTGAGCAAGTTGCTCGATTGTCTTCTCAGAACTTTCAATGTGTTGGCAGA 201
Query 181 GGTGGCACAGTATTGAGCATTGGATATCCACCTCAATCTTATGCACCTCAGTTATTACAA 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GGTGGCACAGTATTGAACATTGGATATCCACCTCAATCTTATGCACCTCAGTTATTACAG 261
Query 241 TCCATGCACCATTCACATGAAAGACCCAGCCAATTAAATCAGGTGCAAGTGCAACATGTG 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCAATGCACCATTCACATGAAAGACCCAGCCAATTAAATCAGGTGCAAGTGCAACATGTG 321
Query 301 CCACTTGGACCCCCAACTCTAATTTCACAGCCAAATGTGTCAATTGCTTCTGGTACCTCC 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 322 CCACTTGGACCCCCAACTCTAGTTTCACAGCCAAATGTGTCAATTGCTTCTGGTACCTCC 381
Query 361 TTGCATCAGCCTTATGTACAAACTCCAGATATTGGTATGCCTGGCTTTGGTGGCCCTAGG 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 382 TTGCATCAGCCTTATGTACAAACTCCAGATATTAGTATGCCTGGCTTTGGTGGCCCTAGG 441
Query 421 GCACTCTTTTCTTATCCGAGTGCCACATCTTACGAAGGTTCGAGGGTGCCACCTCAAGTC 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 442 GCACTCTTTTCTTATCCGAGTGCCACATCTTACGAAGGTTCGAGGGCACCACCTCAAGTC 501
Query 481 ACTGGACCAAGCATTCATAGTCAGGCACAACAGAGAGCATCTATCATTCATACTTCTGCA 540
||||||||||||| |||||||||||||||||| ||||||||||||| || ||| |||||
Sbjct 502 ACTGGACCAAGCAGTCATAGTCAGGCACAACATAGAGCATCTATCAGCCAGACTACTGCA 561
Query 541 GAATCTTCTATCATGAATCCGACATTTGAACAACCAAAGGCAGCTTTT-TTAAAACCTTT 599
||||||||||| ||||||||||||||||||||||||||| ||||||| | |||||| |
Sbjct 562 CAATCTTCTATCCTGAATCCGACATTTGAACAACCAAAGGAAGCTTTTACT-AAACCTAT 620
Query 600 ACCTTCTCAAAAGGCTCTAACAGATTGGGTTGAGCATACCTCTGCGGATGGAAGGAAATA 659
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 621 ACCTTCTCAAGAGGCTCTAACAGATTGGGTTGAGCATACCTCTGCAGATGGAAGGAAATA 680
Query 660 TTTTTTCAACAAGAGGACAAAGAAGTCCACTTGGGAGAAGCCTGTTGAGTTGATGACTCT 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTTTTTCAACAAGAGAACAAAGAAGTCCACTTGGGAGAAGCCTGTTGAGTTGATGACTCT 740
Query 720 TTTTGAGAGAGCAGATGCAAGAACTGACTGGAAAGAACATTCAAGTCCTGATGGAAGAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTTTGAGAGAGCAGATGCAAGAACTGACTGGAAAGAACATTCAAGTCCTGATGGAAGAAA 800
Query 780 GTATTACTACAATAAGATTACGAAGCAATCAACATGGACAATGCCGGAAGAGATGAAGAT 839
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 801 GTATTACTACAATAAGATTACGAAGCAATCAACATGGACAATGCCTGAAGAAATGAAGAT 860
Query 840 TGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAAGGCATTATTGA 899
|| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
Sbjct 861 TGCGCGTGAACAAGCAGAAAAAGCATCTGTTCAAGGGCCTCATGCAGAAGGCATTATTAA 920
Query 900 TGCTTCTGAGGTGCTGACTCGTTCTGACACTGCATCGACTGCAGCTCCGACTGGTCTACC 959
|| |||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 921 TGTTTCTAAGGTGCTGACTCGTTCTGATACTGCATCAACTGCAGCTCCGACTAGTCTACC 980
Query 960 AAGCCAAACTTCAACCTCTGAGGGC-GTTGAGAAACTAACTCTTACTTCTGATTTGAAGC 1018
||||||||||||||||||||| | | || ||||||||| ||||||||||||||| |||||
Sbjct 981 AAGCCAAACTTCAACCTCTGATGTCAGT-GAGAAACTAGCTCTTACTTCTGATTGGAAGC 1039
Query 1019 AGCCAGCTTCAGTTCCTGGAAGTTCTTCACCGGTCGAAAATGTTGATCGAGTTCAGATGA 1078
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1040 AGCCAGCTTCAGTTCCTGGAAGTTCTTCTCCGGTCGAAAATGTTGATCGAGTTCAGATGA 1099
Query 1079 GTGCAGATGAAACATCACAATTGTGTGATACTTCAGAAACCGATGGTCTTTCTGTCCCT 1137
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1100 TTGCAGATGAAACATCACAATTGTGTGATACTTCAGAAACCGATGGTCCTTCTGTCCCT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119336737585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5