BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19680.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1 2564 0.0
Ahg914113 jgi|Araly1|914113|Al_scaffold_0001_4367 416 3e-115
> Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1
Length=1800
Score = 2564 bits (1388), Expect = 0.0
Identities = 1628/1740 (94%), Gaps = 32/1740 (2%)
Strand=Plus/Plus
Query 128 TCAATCTTAAATCGTTGAGTATCCAAAAATCTTAAACTCAATGGATCCGTGCTCTTTCGT 187
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 82 TCAATCTTAAAACGTT--GTATCC--AAATCTTAAACTCAATGGATCCGTGCTCTTTCGT 137
Query 188 ACGGATCATAGTCGGTAACTTGGCCGTTAGGTTTCCGTCGTCGtcttcttcttcttcttc 247
||||||||| ||||||||||||||||||||||||| ||| ||| |||||||| |
Sbjct 138 ACGGATCATCGTCGGTAACTTGGCCGTTAGGTTTCAGTCATCG------TCTTCTTC-T- 189
Query 248 CTCATCAGGACCGTCTGTTTCCGGAATCAATCCAACGGCTCCTAACTGTTACTGTAAAAT 307
|| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 190 -TCGTCAGGACCGTCTGTTTCCGGTATCAATCCGTCGGCTCCTAACTGTTACTGCAAAAT 248
Query 308 CAGATTCAAGAACTTTCCTCGTGAGATTGTTTCTGTTCCGGTTATGTTCCGAACTGAATC 367
|||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 249 CAGATTCAAGAATTTTCCTCGCGAGATTGTTTCTATTCCGGTTATGTTCCGAACTGAATC 308
Query 368 TGAATCCGAGACTCGTTGCTCCTCCTCCGGTAACGTATCCACCGTTGCTGCTTGTTTCAG 427
|||||||||||||||||| | |||||||||||||| || ||||| ||||||||||||||
Sbjct 309 TGAATCCGAGACTCGTTG-T--TCCTCCGGTAACGTCTCTACCGTCGCTGCTTGTTTCAG 365
Query 428 TTTAAGTAAAGCTCAGATCGAAGCGTCGTTGAAGAAACCTAAATTTAGTGTTCTCTCCGT 487
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 366 TTTAAGTAAAGCTCAGATCGAAGCGTCTTTGAAGAAACCTAAGTTGAGTGTTCTCTCCGT 425
Query 488 TGAGGCTTATTCCCGCGGAAATAGCGACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGG 547
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 426 TGAGGCTTTTTCCCGCGGAAATTGCGACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGG 485
Query 548 ACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGATTTGAGGTTTCGCTT-GATTTGAAAT 606
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 486 ACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGATTTGAGGTTTCG-TTGGATTTGAAAT 544
Query 607 CGGCGGAGACGAAGAGTTTTTTGGCGCATAACGGTTGGGTTGCTTTGCCGTCTAAGAAAA 666
|||||||| |||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 CGGCGGAGGCGAAGACTTGTTTGGCGCATAACGGTTGGGTTGCTTTACCGTCTAAGAAAT 604
Query 667 CGAAGAGTAAAACTGGATCCGATCCGGAGCTCCACGTTAGCGTACGGGTCGAACCTGACC 726
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 605 CGAAGAGTAAATCTGGATCCGATCCGGAGCTCCATGTTAGCGTTCGGGTCGAACCTGACC 664
Query 727 CGAGATTCGTGTTTCAGTTCGACGGTGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTTC 786
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 665 CGAGATTCGTGTTTCAGTTCGACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTCC 724
Query 787 AAGGAAACACAAAGCAAGCCGTGTTCACTTGCAAATTCGGCTCTAGAAACTCCAACTCCG 846
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 725 AAGGAAACACTAAGCAAGCCGTGTTCACTTGCAAGTTCGGCTCCAGAAACTCCAACTCCG 784
Query 847 GTGATCGAAATCTTCTTCACAGTTCTTCGATGATGTCTGAGAT-AAGCTCAACGAGAAGT 905
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 785 GTGATCGGAATCTTCTTCACAGTTCTTCGATGATGTCTGAG-TCAAGCTCAACGAGAAGT 843
Query 906 TGTATATCGTCGATGAATTCGGAAAAAGAACAACCGTCAAAAGAGAGAAAAGGATGGTCA 965
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 TGTATATCGTCGATGAATTCGGAAAAAGAACAACCGTCGAAAGAGAGAAAAGGATGGTCA 903
Query 966 ATAACGGTCCATGATCTCTCCGGTTCACCCGTGGCTATGGCCTCTATGGTAACACCTTTC 1025
||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 904 ATAACAGTCCATGATCTTTCCGGTTCACCCGTGGCGATGGCCTCTATGGTTACACCTTTC 963
Query 1026 GTACCATCTCCTGGTTCGAACCGGGTGACTCGGTCAAGTCCCGGAGCGTGGCTTATTCTT 1085
|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 964 GTACCATCTCCTGGTTCGAACCGGGTCAATCGATCAAGTCCCGGAGCGTGGCTTATTCTT 1023
Query 1086 CGACCTGACGGTTGCACATGGAAGCCATGGGGAAGACTAGAAGCATGGCGTGAGGCTGGT 1145
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1024 CGACCTGACGGTTGCACATGGAAACCATGGGGAAGACTAGAGGCATGGCGTGAAGCTGGT 1083
Query 1146 TACTCTGACACTCTAGGTTATCGTTTCGAGCTTTTCCAAGACGGTATAGCCACCGCAGTT 1205
||||| ||||| || ||||| ||||| |||||||||| |||||| || ||||| || ||
Sbjct 1084 TACTCCGACACACTCGGTTACCGTTTTGAGCTTTTCCTAGACGGAATCGCCACAGCCGTC 1143
Query 1206 TCTGCATCGTCGTCGATCAGTTTGAAAAATGGCGGGAGTTTTGTTATTGATGTTACCGGC 1265
|| ||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1144 TCCGCATCTTCGTCTATCAGTTTGAAAAATGGCGGGAGTTTCGTTATCGACGTTACCGGC 1203
Query 1266 GGTACAAGCACAACGGCGTCTACGCCGACAACGAGTCCTCAAGGAAGCTGGGATCTCGGA 1325
|| |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1204 GGGACAACCACGACGGCGTCAACGCCGACGACGAGTCCTCAAGGAAGCTGGGATCTCGGA 1263
Query 1326 TCCGGTTCAAGCGCCGG-TTCAAGACCCGCGTCGAGACCAGGATCAGGATCCGGGTCGGA 1384
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TCCGGTTCAAGCG-CGGATTCGAGACCCGCGTCGAGACCAGGATCAGGATCCGGGTCGGA 1322
Query 1385 TTTCGGATATCTACTACCGCAACAT-C--CGTCTGCGGCCGCGCAAAACAGAGGGTTCGT 1441
|||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1323 TTTCGGATATTTACTACCGCAACATCCGTCGTCTGCGGCGGCGCAAAACAGAGGGTTCGT 1382
Query 1442 TATGTCGGCTACGGTTGAAGGAGTTGGGAAACGAAGCAAACCAGAAGTAGAAGTCGGTGT 1501
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1383 GATGTCGGCTACGGTTGAAGGAGTTGGGAAACGAAGCAAACCGGAAGTAGAAGTCGGTGT 1442
Query 1502 GACGCACGTGACATGTACGGAGGATGCAGCAGCGCACGTGGCATTAGCTGCGGCGGTGGA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GACGCACGTGACATGTACGGAGGATGCAGCAGCGCACGTGGCATTAGCTGCGGCGGTGGA 1502
Query 1562 TCTGAGTTTGGATGCTTGCAGGCTTTTCTCACACAAGCTAAGGAAAGAGCTGAGACAGCA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TCTGAGTTTGGATGCTTGCAGGCTTTTCTCACACAAGCTAAGGAAAGAGCTGAGACAGCA 1562
Query 1622 AAGCCAGCTTGGTGTCGTTTGACTTGTTTCGCTTTGTCGTTTTACCAATTCATGAGTTGT 1681
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1563 AAGCCAGCTTGGTGTCGTTTGACTTGTTTCG-TTTGTCGTTTTACCAATTCATGAGTTGT 1621
Query 1682 CTTCCACTCACAtttttttggtttg----aattttctatttttttctttttA-AGATAGC 1736
||||||||||||||||||| ||| ||||||||||||| | ||||| | |||||||
Sbjct 1622 CTTCCACTCACATTTTTTTTTTTTTTTTTAATTTTCTATTTTCT-CTTTTAAGAGATAGC 1680
Query 1737 GTTAGGAATTAGCCAGCCAtttttttGAGAGGTGGATGTCATCATTATTAAAAATTGTTA 1796
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1681 GTTAGGAATTAGCCAGCCAATTTTTTGAGAGGTGGATGTCATCATTATTATAAATTGTTA 1740
Query 1797 ATATCTTTCTCAGTACAGCTAAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 1856
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ATATCTTTCTCTGTACAGCTAAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 1800
> Ahg914113 jgi|Araly1|914113|Al_scaffold_0001_4367
Length=1380
Score = 416 bits (225), Expect = 3e-115
Identities = 541/685 (79%), Gaps = 56/685 (8%)
Strand=Plus/Plus
Query 168 ATGGATCCGTGCTCTTTCGTACGGATCATAGTCGGTAACTTGGCCGTTAGGTTTCCGTCG 227
||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||| |
Sbjct 1 ATGGATCCGTGCTCTTTCGTACGTATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGAGG 60
Query 228 TCGtcttcttcttcttcttcCTCATCAGGACCGTCTGTTTCCGGAATCAATCCAACGGCT 287
|| || || || || ||||| ||||| ||||||||||||| ||| || |||| |||
Sbjct 61 TCATCGTCGTCATCGTCTTCGTCATCGGGACCGTCTGTTT-CGG-ATGTATCCTCCGG-- 116
Query 288 CCTAACTGTTACTGTAAAATCAGATTCAAGAACTTT-CCTCGTGAGATTGTTTCTGTTCC 346
||| || || ||||| |||| ||||||| | ||| || || ||||||||||||||||
Sbjct 117 --TAATTGCTATTGTAAGATCAAATTCAAG-AGTTTCCCACGCCAGATTGTTTCTGTTCC 173
Query 347 GGTTATGTTCCGAACTGAATCTGAATCCGAGACTCGTTGCTCCTCCTCCGGTAACGTATC 406
||| |||| ||||| ||||| ||||| ||| |||| || | | |||||||||||| ||
Sbjct 174 CGTTCTGTTACGAACCGAATCGGAATCAGAGTCTCGGTG-T--TGCTCCGGTAACGTCTC 230
Query 407 CACCGTTGCTGCTTG-TTTCAGTTTAAGTAAAG-CTCAGATCGAAG-CGTCGT-TGAAGA 462
||||| |||||||| ||| ||| |||| ||| ||||||| | || |||| | | ||||
Sbjct 231 AACCGTCGCTGCTTGCTTT-AGTCTAAG-CAAGTCTCAGATTG-AGACGTC-TCTTAAGA 286
Query 463 AACCTAAATTTAGTGTTCTCTCCGTTGAGGCTTATTCCCGCGGAAATAGCGACGGAGACG 522
| || |||| |||||||||||||| |||| ||| || ||||| | || | ||
Sbjct 287 AGCCCAAATGGAGTGTTCTCTCCGTCGAGGTTTACTCTCGCGG---T------GGTG-CG 336
Query 523 ACGGTGTTAGCGGCGCGTCGTGTGGACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGAT 582
| ||| | | | || || | || ||| | | ||||||||| || ||||||| |
Sbjct 337 TC-GTG-T----G-GATTC--GTCG-CT-GCTTC--C-GGTGAGAAGCTGATTGGTCGGT 382
Query 583 TTGAGGTTTCGCTTGATTTGAAATCGGCGGAGACGAAGA-GTTTTTTGGCGCATAACGGT 641
|||||||| ||||||||||||| ||||||||||||||| | | ||| || || |||||
Sbjct 383 TTGAGGTTACGCTTGATTTGAAGGCGGCGGAGACGAAGACG-TGTTTCGCACACAACGGC 441
Query 642 TGGGTTGCTTT-GCCGTCT-AA--GAA-AACGAAG-AGTAAAACTGGATCCGATCCGGAG 695
||||||| ||| | | || || ||| || ||| || || | || || |||||||||
Sbjct 442 TGGGTTGATTTGGGC-ACTAAATCGAAGAA-TAAGAAG-AAGTCCGGGTCGGATCCGGAG 498
Query 696 CTCCACGTTAGCGTACGGGTCGAACCTGACCCGAGATTCGTGTTTCAGTTCGACGGTGAG 755
|||||||||||||||||||| ||||| ||||||||||| |||||||| || ||||| |||
Sbjct 499 CTCCACGTTAGCGTACGGGTTGAACCCGACCCGAGATTTGTGTTTCAATTTGACGGCGAG 558
Query 756 CCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAAGGAAACACAAAGCAAGCCGTGTTCACT 815
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 559 CCTGAGTGTAGTCCTCAGGTTTTTCAAGTTCAAGGAAACACAAAACAAGCTGTTTTCACT 618
Query 816 TGCAAATTCGGCT-CTAGAAACTCC 839
||||| ||||| | | |||||||||
Sbjct 619 TGCAAGTTCGGGTTC-AGAAACTCC 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5