BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19690.1

Length=637
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929871 jgi|Araly1|929871|scaffold_302328.1                        821    0.0  
  Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1         174    6e-43


> Ahg929871 jgi|Araly1|929871|scaffold_302328.1
Length=527

 Score =  821 bits (444),  Expect = 0.0
 Identities = 490/512 (96%), Gaps = 4/512 (1%)
 Strand=Plus/Plus

Query  1    AAAACAATGTCTCTACTCAAAACCAACATTTTATTTCTCTTAGCAATTGCTCTTTTCTAT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  15   AAAACAATGTCTCTACTCAAAACCAACATTTTATTTCTCTTAGCAATTGCTCTTTTGTAT  74

Query  61   GGCTCTTTAGCCGAAGATTTGCAACAACAATTCTTAGAGGCCCACAACGAAGCCCGAAAC  120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  75   GGCTCTTTAGCCGAAGATTTGCAACAAGAATTCTTAGAGGCCCACAACGAAGCCCGAAAC  134

Query  121  GAGGTTGGGCTCGACCCATTGGTTTGGGACGATGAGGTCGCTGCATATGCGGCAAGCTAT  180
            ||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct  135  GAGGTTGGGCTTGACCCATTGGTTTGGGACGATGAGGTCGCTGCTTATGCCGCCAGCTAT  194

Query  181  GCAAACCAGAGGATCAATGATTGTGCATTAGTCCATTCGAATGGACCATTTGGAGAGAAC  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  195  GCAAACCAGAGGATCAATGATTGTGCATTAGTCCATTCGAACGGACCATTTGGAGAGAAC  254

Query  241  ATAGCGATGAGTAGTGGAGAAATGTCGGCTGAAGATGCTGCGGAAATGTGGATCAACGAG  300
            ||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct  255  ATAGCTATGAGTAGTGGAGATATGCCGGCTGAAGATGCTGCAGAAATGTGGATCAACGAG  314

Query  301  AAACAGTACTACGATTACGATAGTAACACGTGTAATGATCCAAACGGTGGCACCTGTCTA  360
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  315  AAACAGTACTACGATTACAATAGTAACACGTGTAATGATCCAAACGGTGGCACGTGTCTA  374

Query  361  CATTACACGCAAGTTGTTTGGAAAAACACAGTTCGTTTGGGATGTGCTAAAGTTGTGTGT  420
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  375  CATTACACGCAAGTTGTTTGGAAAAACACAGTTAGATTGGGATGTGCTAAAGTTGTGTGT  434

Query  421  AACAGTGGTGGTACTTTTATTACATGCAACTATGATCCTCCTGGTAATTACATTGGTGAA  480
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  AACAGTGGTGGCACTTTTATTACATGCAACTATGATCCTCCTGGTAATTACATTGGTGAA  494

Query  481  AAACCATTCTAA--AAA--TAATTTCATGTCT  508
            || |||| ||||  |||  |||||||||||||
Sbjct  495  AACCCATACTAATTAAAAATAATTTCATGTCT  526


> Ahg479485 jgi|Araly1|479485|fgenesh2_kg.3__2186__AT3G19680.1
Length=1800

 Score =  174 bits (94),  Expect = 6e-43
 Identities = 98/100 (98%), Gaps = 0/100 (0%)
 Strand=Plus/Minus

Query  537   GAGATAATGAGTTGTTTGTTAGTTGTTACTGTCATTTCTTAGCTGTACTGAGAAAGATAT  596
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1800  GAGATAATGAGTTGTTTGTTAGTTGTTACTGTCATTTCTTAGCTGTACAGAGAAAGATAT  1741

Query  597   TAACAATTTTTAATAATGATGACATCCACCTCTCaaaaaa  636
             ||||||||| ||||||||||||||||||||||||||||||
Sbjct  1740  TAACAATTTATAATAATGATGACATCCACCTCTCAAAAAA  1701



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23331225204


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5