BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19700.1
Length=3460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479487 jgi|Araly1|479487|fgenesh2_kg.3__2188__AT3G19700.1 4193 0.0
Ahg929873 jgi|Araly1|929873|scaffold_302330.1 124 3e-27
> Ahg479487 jgi|Araly1|479487|fgenesh2_kg.3__2188__AT3G19700.1
Length=3361
Score = 4193 bits (2270), Expect = 0.0
Identities = 2836/3105 (91%), Gaps = 56/3105 (2%)
Strand=Plus/Plus
Query 1 ATGCTCCGGCTACTATTTATCGTTCGCCTTCTCTTTTTAATGCCACTAGCTTCATCGAGA 60
||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 4 ATGTTCCGGCGATTATTTATCGTTCGCCTTCTCTTTTTAATTCCACTGGCTTCATCCAGA 63
Query 61 TCCAACCACAGTGAAGAAGTCGAGAATCTTCTCAAACTGAAATCCACCTTTGGAGAAACA 120
|||||||| ||| ||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 64 TCCAACCATAGTCAAGAAGTAGATACTCTTCTCAAACTGAAATCCACCTTTGGAGAAACA 123
Query 121 AAATCCGACGACGTCTTTAAGACCTGGACTCACCGGAATTCGGCATGTGAATTCGCCGGA 180
| ||||| ||||||||| |||||||||||||||||||| |||||||| |||||| |||||
Sbjct 124 ATATCCGGCGACGTCTTCAAGACCTGGACTCACCGGAACTCGGCATGCGAATTCTCCGGA 183
Query 181 ATCGTATGTAATTCCGACGGAAACGTCGTCGAGATCAACCTTGGAAGTCGGAGTTTGATC 240
|||||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 184 ATCGTATGCAATTCCGACGGAAACGTCACCGAGATCAATCTTGGAAGTCAGAGTTTGATC 243
Query 241 AACCGAGACGACGACGGT-AGGTTCACCGATCTTCCTTTCGATTCAATCTGCGATTTGAA 299
|| | |||| ||||||| | || || |||||||||||||||| |||||| ||||||||
Sbjct 244 AATTGCGACGGCGACGGTAAAATT-ACAGATCTTCCTTTCGATTTAATCTGTGATTTGAA 302
Query 300 GTTGCTGGAGAAGCTTGTTCTAGGAAACAACT-CTTTACGTGGTCAGATTGGTACGAATC 358
||| ||||||||||||||||||||||||||| ||| | | || | |||| ||| |||||
Sbjct 303 GTTTTTGGAGAAGCTTGTTCTAGGAAACAACTCCTTGA-GCGGCCGGATTAGTAAGAATC 361
Query 359 TC-GGGAAATGTAATCGCTTGAGATACTTAGACCTCGGGATCAACAATTTCTCCGGTGAG 417
|| ||| ||||||||| | ||||||||||||||||||| | |||||||||||| ||||||
Sbjct 362 TCAGGG-AATGTAATCACCTGAGATACTTAGACCTCGGCACCAACAATTTCTCTGGTGAG 420
Query 418 TTTCCGGCGATTGATTCGTTACAATTACTCGAGTTTTTGAGCTTAAACGCTTCTGGAATC 477
||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||||||||
Sbjct 421 TTTCCGGCGATTGATTCATTACGATTGCTCAAGTTTTTGAGCTTAAACGGTTCTGGAATC 480
Query 478 TCTGGAATATTCCCATGGAGTTCTCTAAAAGACCTGAA-ACGATTGAGTTTCCTAAGCGT 536
|||||||||||||||||||||||||||||| |||| || | |||| |||||| |||| ||
Sbjct 481 TCTGGAATATTCCCATGGAGTTCTCTAAAAAACCTCAAGA-GATTAAGTTTCTTAAGTGT 539
Query 537 TGGAGATAACCGATTCGGTTC-GCATCCATTTCCTAGAGAGATTCTAAATCTCACTGCCT 595
|||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 540 TGGAGATAACCGATTC-GATCTGCATCCATTTCCTAAAGAGATTCTAAATCTCACTGCCT 598
Query 596 TGCAATGGGTTTATCTGAGTAACAGCAGCATCACTGGTAAGATTCCAGAGGGAATCAAAA 655
|| || |||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 599 TGAAAAGGGTTTTTCTGAGTAATAGCAGCATCACCGGTAAGATTCCAGAGGGAATCAAGA 658
Query 656 ACCTTGTTCGTCTACAAAA-CTTGGAGCTCTCTGATAATCAGATCTCTGGTGAAATTCCA 714
||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||
Sbjct 659 ACCTTGTTCGTCTACAAAACCTT-GAGCTCTCTGATAATGAAATCTCTGGTGAAATTCCA 717
Query 715 AAGGAGATTGTTCAGCTCAAAAACCTAAGGCAGCTTGAGATTTATAGTAATGACTTGACC 774
|||| ||| ||||| |||| |||||||||||||||||||||||| | ||| |||||||
Sbjct 718 AAGGGGATAGTTCATCTCAGAAACCTAAGGCAGCTTGAGATTTACAACAATTACTTGACT 777
Query 775 GGTAAGTTACCATT-GGGTTTTAGGAATTTGACGAATCTGAGGAATTTCGACGCCTCTAA 833
|||||||||||||| ||| ||| |||||||||||||| || |||||||||||||||||||
Sbjct 778 GGTAAGTTACCATTCGGG-TTTCGGAATTTGACGAATTTGTGGAATTTCGACGCCTCTAA 836
Query 834 CAACTCCTTGGAAGGTGATTTATCAGAGCTGCGGTTCTTAAAGAATCTTGTGTCTCTTGG 893
||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 837 CAACTCCTTAGAAGGTGATTTGTCAGAGCTGAGGTTCTTAAAGAATCTTGTTTCTCTTGG 896
Query 894 AATGTTCGAAAACCGATTAACCGGTGAGATTCCAAAAGAGTTTGGAGATTTCAAGAGTTT 953
| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTGTTCGAAAACCTATTGACCGGTGAGATTCCAAAAGAGTTTGGAGATTTCAAGAGTTT 956
Query 954 AGCTGCTTTGTCTCTTTACAGAAACCAGCTCACAGGGAAGCTTCCGAGGAGACTCGGTTC 1013
||||||||||||||||||||||||||| || || ||||||||||||| |||||||| ||
Sbjct 957 AGCTGCTTTGTCTCTTTACAGAAACCAACTTACTGGGAAGCTTCCGAACAGACTCGGATC 1016
Query 1014 TTGGACAGCTTTTAAG-TACATCGACGTGTCTGAGAACTTCTTGGAAGGTCAGATTCCTC 1072
|||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGGACCGGTTTT-AGATACATCGACGTGTCTGAGAACTTCTTGGAAGGTCAGATTCCTC 1075
Query 1073 CTTATATGTGCAAGAAAGGCGTAATGACGCATCTTCTCATGTTGCAGAACAGATTCACAG 1132
|| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 1076 CTGATATGTGCAAGAAAGGCGCAATGACGCATCTTCTGATGTTGCAGAACAGATTCATAG 1135
Query 1133 GACAATTTCCAGAGAGTTATGCTAAATGTAAGACTCTGATTCGTCTTCGTGTAAGTAACA 1192
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1136 GACAATTTCCAGAGAGCTATGCTAAATGCAAGACTCTGATTCGTCTTCGTGTGAGTAACA 1195
Query 1193 ACTCTCTCTCTGGAATGATTCCTTCAGGGATTTGGGGTCTTCCTAATCTACAGTTTCTTG 1252
||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1196 ACTTTCTCTCTGGTGTGATTCCTTCAGGGATTTGGGGGCTTCCTAATCTCCAGTTTCTTG 1255
Query 1253 ACCTTGCTTCAAACTATTTTGAAGGAAACCTCACTGGTGATATTGGTAATGCCAAGTCTC 1312
| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1256 ATCTTGCTTCAAACCGTTTTGAAGGAAACCTCACTGATGATATTGGCAATGCCAAGTCTC 1315
Query 1313 TAGGTTCTTTAGATTTGAGCAATAATAGATTTTCAGGTTCTCTACCGTTTCAGATCTCAG 1372
| || ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1316 TTGGCTCTTTGGATTTAAGCAACAATCGATTTTCAGGTTCTCTACCGTTTCAGATCTCAG 1375
Query 1373 GAGCTAACTCGTTAGTGTCGGTTAATCTTCGAATGAATAAGTTTTCCGGGATAGTTCCTG 1432
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 1376 GAGCTAACTCGTTAGTGTCGGTTAATCTTCGCATGAATAAGTTCTCCGGGATAGTTTCTG 1435
Query 1433 AATCTTTTGGTAAGCTTAAGGAGCTTTCAAGTCTCAT-TCTTGACCAGAATAATCTATCT 1491
| ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 1436 ACTCTTTTGGTAAGCTTAAGGAGCTTTCAAGTCTC-TATCTTGATCAGAATAATCTATCA 1494
Query 1492 GGTGCTATACCAAAGTCACTAGGCTTATGCACATCTTTGGTTG-ATCTAAACTTTGCTGG 1550
|||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||
Sbjct 1495 GGTGCTATACCAAAGTCACTAGGCTTATGCACATTTTTGG-TGTTTCTAAACCTTGCTGG 1553
Query 1551 AAACTCACTCTCTGAGGAAATCCCGGAAAGTTTAGGATCTTTAAAGTTATTGAATTCCCT 1610
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1554 AAACTCACTCTCTGAAGAAATCCCGGAAAGTTTAGGATCTTTACAGTTATTGAATTCTCT 1613
Query 1611 GAATCTGTCAGGAAACAAATTATCAGGAATGATTCCTGTTGGTTTGTCGGCTCTGAAGCT 1670
||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1614 GAATCTGTCAGGAAACAAACTGTCAGGAATGATTCCTGTTGGTTTATCGGCTCTGAAGCT 1673
Query 1671 AAGCTTACTTGACTTATCCAACAACCAATTGACCGGTTCTGTTCCTGAATCTCTCGTAAG 1730
||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||
Sbjct 1674 AAGCTTACTTGACTTATCCAACAACCAGCTAACTGGTTCTGTTCCTGAATCTCTCGAAAG 1733
Query 1731 TGGAAGCTTTGAAGGAAATTCAGGACTATGCAGCTCAAAGATCAG-ATATCTTCGTCCAT 1789
||||| |||||||||||||||||| |||||||||||||||||| | |||||||| |||||
Sbjct 1734 TGGAAACTTTGAAGGAAATTCAGGGCTATGCAGCTCAAAGATC-GCATATCTTCATCCAT 1792
Query 1790 GTCCGCTTGGAAAACCTCACAGCCAAGGGAAGAGGAAACA-TTTGTCAAAAG-TCGACAT 1847
|||||||||||||||||| ||||||||||||||||||| | ||| || ||| || ||||
Sbjct 1793 GTCCGCTTGGAAAACCTCGCAGCCAAGGGAAGAGGAAA-AGTTTTTC-TAAGTTCAACAT 1850
Query 1848 GTGTTTCATTGTTGCAGCGATACTTGCTCTGTTTTTCTTATTCAGTTACGTGATCTTTAA 1907
||||| || ||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 1851 TTGTTTAATCGTTGCAGCGGTACTTGCTCTGTTTTTATTATTCAGTTACGTGATCTTCAA 1910
Query 1908 GATAAGACGAGATAAGTTGAATAAAACGG-TGCAGAAGAAGAACGACTGGCAAGTGAGCT 1966
||||||||| |||| || |||| |||||| | |||||||||||| | |||||||||||||
Sbjct 1911 GATAAGACGGGATAGGTCGAATCAAACGGCT-CAGAAGAAGAACAATTGGCAAGTGAGCT 1969
Query 1967 CTTTCCGGTTACTAAACTTTAATGAAATGGAAATTATTGATGAGATCAAATCAGAGAATA 2026
|||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1970 CTTTTCGGTTACTTAACTTTAACGAAATGGAAATTATTGATGAGATCAAGTCAGAGAATC 2029
Query 2027 TCATAGGCAGAGGAGGTCAGGGGAATGTTTACAAAGTAAGTCTAAGAAGCGGTGAAACAC 2086
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2030 TCATAGGCAGAGGCGGTCAAGGGAATGTTTACAAAGTAACTCTAAGAAGCGGTGAAACAC 2089
Query 2087 TAGCCGTTAAACATATCTGGTGTC-----C-GGAGAGTTCCC-ACGAAAGCTTTAGAAGC 2139
||||||||||||| |||||||||| | ||| || |||| ||||||||||||||||
Sbjct 2090 TAGCCGTTAAACACATCTGGTGTCAGTGTCAGGATAG-TCCCTGCGAAAGCTTTAGAAGC 2148
Query 2140 TCAACGGCAATGTTAAGTGACGGCAATAACAGAAGTAATA-ACGGAGAATTCGAGGCAGA 2198
|| ||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||
Sbjct 2149 TCGACGGCAATGTTAAGTGACGGCAACAACAGAAGTAAGAGCCGG-GAATTTGAGGCAGA 2207
Query 2199 AGTCGCGACGCTAAGCAATATAAAACATATAAACGTTGTGAAGTTGTTCTGCAGCATAAC 2258
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 AGTCGGGACGCTAAGCAATTTAAAACATATAAACGTTGTGAAGTTGTTCTGCAGCATAAC 2267
Query 2259 GTGTGAGGACAGTAAGCTGCTTGTCTATGAGTATATGCCTAATGGAAGCTTGTGGGAGCA 2318
||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2268 GTGTGAGGATAGTATGCTGCTTGTATATGATTATATGCCTAATGGAAGCTTGTGGGAGCA 2327
Query 2319 GCTGCATGAGCGTCGTGGTGAGCAAGAAATTGGGTGGCGTGTGAGACAAGCGTTAGCTTT 2378
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2328 GCTGCATGAGCGTCGTGGTGAGCAAGAGATTGGGTGGCGTGTGAGACAAGCATTAGCTTT 2387
Query 2379 AGGAGCTGCTAAAGGGCTGGAGTATCTT-CACCATGGGTTAGATCGGCCGGTGATACATC 2437
||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2388 AGGAGTTGCTAAAGGGCTGGAGTAT-TTGCACCATGGGTTAGATCGGCCGGTGATACATC 2446
Query 2438 GAGACGTGAAGTCCAGCAATATATTGCTTGATGAGGAATGGAGACCAAGGATTGCTGATT 2497
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2447 GGGACGTGAAGTCCAGCAATATATTGCTTGATGAGGAGTGGAGACCGAGGATTGCTGATT 2506
Query 2498 TTGGATTGGCTAAAATCATTCAGGCTGATTCGGTTCAACGAGATTTCTCGGCTCCTCTTG 2557
||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 2507 TTGGATTGGCTAAAATCATTCAGCCTGATTGGGTTCAACGAGATTCCTCGGCTCCTCTTG 2566
Query 2558 TCAAAGGAACTCTTGGTTACATTGCCCCCGAATATGCATATACTACCAAAGTGAACGAGA 2617
| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 2567 TTGAAGGAACTCTTGGTTACATTGCCCCCGAATACGCGTATACCACCAAAGTGAACGAGA 2626
Query 2618 AGAGCGACGTGTACAGCTTCGGGGTGGTGTTAATGGAGTTGGTGACAGGGAAGAAGCCGT 2677
|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2627 AGAGTGATGTGTACAGCTTCGGGGTGGTGTTAATGGAGTTGGTAACAGGGAAGAAGCCGG 2686
Query 2678 TAGAGACAGATTTCGGCGAGAACAATGACATAGTCATGTGGGTTTGGAGCGTGAGCAAGG 2737
| |||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 2687 TGGAGACAGAGTTCGGCGAGAACAGTGACATAGTCATGTGGGTTTGGAGCATAAGCAAGG 2746
Query 2738 AGACGAACAGAGAAATGATGATGAAATTAATCGATACGAGCATAGAAGATGAATACAAGG 2797
||| ||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||
Sbjct 2747 AGATGAACAGAGAAATGATGATGGAATTAGTCGATCCGAGTATAGAAGATGAATACAAGG 2806
Query 2798 AGGATGCTCTTAAAGTTTTGACCATTGCTTTATTATGCACGGACAAGTCTCCTCAGGCTA 2857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2807 AGGATGCTCTTAAAGTTTTGACCATTGCTTTATTATGCACGGACAAGTCTCCTCAGGCTA 2866
Query 2858 GACCGTTTATGAAATCAGTAGTTAGTATGCTAGAAAAAATAGAGCCTTCCTATAACAAGA 2917
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 2867 GACCGTTTATGAAATCAGTGGTTAGTATGCTAGAGAAAATAGAGCCTTCCTA---CAAGA 2923
Query 2918 ACAGTGGAGAAGCAAGTTACGGTGAGAGTGCTAATGATGAGATTACTAAAGTTGTATAAC 2977
||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2924 ACAATGGAGAAGCAAGTTACGATGAGAGTGCTAATGATGAGATTGCTAAAGTTGTATAAC 2983
Query 2978 TCATAGATTGCACTTGGTTATTAATCGAGCTAAGGCTCAAGAATAATAAATTCTTGATTG 3037
||||| || | || | | ||||||||||||||||||||| ||||||||||||||
Sbjct 2984 TCATA--TT--A-TT----A--A-TCGAGCTAAGGCTCAAGAATATTAAATTCTTGATTG 3031
Query 3038 GTTTTATACTTaaa-aaaaTTCTTCAGAGAAAGATTCTAAGACCA 3081
|||||||| ||| | ||||||||| |||||||||||||| |||||
Sbjct 3032 GTTTTATAATTATACAAAATTCTTAAGAGAAAGATTCTACGACCA 3076
Score = 248 bits (134), Expect = 2e-64
Identities = 231/275 (84%), Gaps = 17/275 (6%)
Strand=Plus/Plus
Query 3191 aaaaataattaaaaagataaagcaaaaaGCCATAGTTATTAAATAACTTACAGACGAACA 3250
||||| || |||||||| |||| ||| || ||||||||||||||||||||||| || |
Sbjct 3099 AAAAAAAAGCAAAAAGATGAAGC--AAA-CCGTAGTTATTAAATAACTTACAGACCAA-A 3154
Query 3251 -TTTATAAAATACATCGCAACGATAGGACATGCATGATC---ATCACAATCACAAAGATC 3306
|||||||||||||| | ||||| | || |||||||||| || |||| ||||||||||
Sbjct 3155 TTTTATAAAATACATTGTAACGACATGATATGCATGATCATGATGACAAACACAAAGATC 3214
Query 3307 AGAGACATCTTCAGATGTTTCTTACATAAGTTTTGTATacacacacacacaTATTTAGCA 3366
|||||||||||||||||||||||||||| |||||||||||||||||| || | ||| ||
Sbjct 3215 AGAGACATCTTCAGATGTTTCTTACATATGTTTTGTATACACACACAT-CA-AGTTA-CA 3271
Query 3367 TCAAGTTACA-GTTTCAACTTTCAGCCCTGGCGGTCAATCTCCACCGTCCATCCCTTGGT 3425
||| || | |||||| | | | |||||||||||||||||||||||||||||
Sbjct 3272 ----GTTTCAAGATTCAACCCTG-GTGGTAACGGTCAATCTCCACCGTCCATCCCTTGGT 3326
Query 3426 ATCCTCGACCCGACCCGTCTGGATATCACTTAACG 3460
|||||||||||||||||||||||||||| ||||||
Sbjct 3327 ATCCTCGACCCGACCCGTCTGGATATCATTTAACG 3361
> Ahg929873 jgi|Araly1|929873|scaffold_302330.1
Length=1113
Score = 124 bits (67), Expect = 3e-27
Identities = 90/100 (90%), Gaps = 6/100 (6%)
Strand=Plus/Minus
Query 3367 TCAAGTTACAGTTTCAACTTTCAGCCC---TGG---CGGTCAATCTCCACCGTCCATCCC 3420
||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||
Sbjct 1113 TCAAGTTACAGTTTCAAGATTCAACCCTGGTGGTAACGGTCAATCTCCACCGTCCATCCC 1054
Query 3421 TTGGTATCCTCGACCCGACCCGTCTGGATATCACTTAACG 3460
||||||||||||||||||||||||||||||||| ||||||
Sbjct 1053 TTGGTATCCTCGACCCGACCCGTCTGGATATCATTTAACG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130651648109
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5