BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19710.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929873 jgi|Araly1|929873|scaffold_302330.1 1718 0.0
Ahg479487 jgi|Araly1|479487|fgenesh2_kg.3__2188__AT3G19700.1 248 8e-65
> Ahg929873 jgi|Araly1|929873|scaffold_302330.1
Length=1113
Score = 1718 bits (930), Expect = 0.0
Identities = 1053/1113 (95%), Gaps = 6/1113 (1%)
Strand=Plus/Plus
Query 47 CTCGACTCGAACAAACACATCCATGGCTCCTTCTGCGCAACCTCTTCCTGTGAGTGTTTC 106
|||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 CTCGACTCAAACAAGCACATCCATGGCTCCTTCTACGCAACCTCTTCCTACAAGTGTTTC 60
Query 107 GGATGAAAAATATGCGAATGTCAAGTGGGAAGAGTTGGCATTCAAGTTTGTTCGTACGGA 166
||||||||| ||||| |||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 61 GGATGAAAAGTATGCTAATGTCAAGTGGGACGAGTTGGTATTCGGGTTTGTTCGTACGGA 120
Query 167 TTATATGTATGTTGCGAAGTGCAATCATGGAGAGAGTTTTCAAGAGGGGAAGATTCTTCC 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TTATATGTATGTTGCGAAGTGCAATCATGGAGAGAGTTTTCAAGAGGGAAAGATTCTTCC 180
Query 227 TTTTGCTGATTTGCAACTTAACCCTTGCGCTGCTGTTCTTCAGTATGGCCAGGGTTTATA 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTGCTGATTTGCAACTTAACCCTTGCGCTGCTGTTCTTCAGTATGGCCAGGGTTTATA 240
Query 287 TGAAGGACTGAAAGCTTACAGGACAGAAGATGGTCGGATTCTGCTATTCCGACCAGACCA 346
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAAGGACTGAAGGCTTACAGGACAGAAGATGGTCGGATTCTGCTATTCCGACCAGACCA 300
Query 347 AAACGGTCTCCGCCTTCAAGCCGGAGCTGACAGACTCTATATGCCTTATCCTTCGGTCGA 406
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 301 AAACGGTCTCCGCATTCAAGCCGGCGCCGACAGACTCTATATGCCTTATCCTTCGGTCGA 360
Query 407 TCAATTCGTCTCCGCCATCAAACAAGTTGCTCTTGCCAACAAGAAATGGATTCCTCCTCC 466
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 TCAATTTGTCTCCGCCATCAAACAAGTGGCTCTTGCCAACAAGAAATGGATTCCTCCTCC 420
Query 467 GGGGAAAGGAACATTGTATATTAGGCCTATCTTGTTTGGGAGTGGTCCGATTCTTGGTTC 526
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 421 GGGGAAAGGAACATTGTATATCAGGCCTATCTTGTTTGGAAGTGGTCCGATTCTTGGTTC 480
Query 527 ATTTCCCATTCCTGAGACCACCTTCACAGCTTTTGCCTGTCCTGTTGGACGTTATCATAA 586
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 481 ATTTCCTATTCCTGAGACCACCTTCACAGCGTTTGCTTGTCCTGTTGGACGTTATCATAA 540
Query 587 GGATAACTCTGGTTTGAATCTGAAAATCGAAGATCAGTTTCGTCGAGCTTTTCCTAGTGG 646
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 541 GGATAACTCTGGTTTGAATCTGAAAATCGAGGATAAGTTTCGTCGAGCTTTTCCTAGTGG 600
Query 647 AACTGGTGGTGTGAAGAGCATCACAAACTATTGTCCTGTTTGGATACCATTGGCAGAGGC 706
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 601 AACTGGTGGTGTAAAGAGCATCACAAATTATTCTCCTGTTTGGATACCATTGGCAGAGGC 660
Query 707 GAAAAAACAAGGTTTCTCTGATATTTTGTTTTTGGATGCTGCAACTGGCAAAAACATTGA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 661 GAAAAAACAAGGTTTCTCTGATATTTTGTTTTTGGATGCTGCAACTGGCAAAAACGTGGA 720
Query 767 AGAACTTTTCGCAGCTAATGTTTTTATGCTCAAGGGCAATGTTGTATCGACACCAACAAT 826
|||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||
Sbjct 721 AGAACTTTTCGCAGCTAACATTTTCATGCTCAAGGGAAATGTTGTATCGACTCCAACAAT 780
Query 827 TGCAGGAACTATTTTGCCCGGAGTCACTCGAAACTGCGTAATGGAATTGTGTCGTGATTT 886
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 781 TGCAGGAACTATTTTGCCCGGAGTCACACGAAACTGCGTAATGGAATTATGTCGTGATTT 840
Query 887 CGGCTACCAGGTCGAGGAACGTACGATTCCTCTAGTGGACTTTCTCGATGCGGACGAAGC 946
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
Sbjct 841 CGGCTACCAGGTCGAGGAACGTGTGATTCCTCTAGAGGACTTTCTCGATTCGGACGAAAC 900
Query 947 TTTCTGTACTGGCACTGCTTCCATTGTGACTAGTATTGCATCCGTAACCTTTAAAGACAA 1006
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 901 TTTCTGTACTGGGACTGCTTCAATTGTGACTAGTATTGCATCCGTAACCTTCAAAGACAA 960
Query 1007 AAAGACCGGATTCAAAACAGGGGAAGAAACATTGGCTGCGAAGCTATACGAGACGTTAAG 1066
|||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 961 AAAGACTGCATTCAAAACAGGAGAAGAGACATTGGCTGCGAAGCTATACGAGACGTTAAA 1020
Query 1067 TGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTGACCG--- 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTGACCGTTA 1080
Query 1124 CCA---GGGCTGAAAGTTGAAACTGTAACTTGA 1153
||| ||| |||| |||||||||||||||||
Sbjct 1081 CCACCAGGGTTGAATCTTGAAACTGTAACTTGA 1113
> Ahg479487 jgi|Araly1|479487|fgenesh2_kg.3__2188__AT3G19700.1
Length=3361
Score = 248 bits (134), Expect = 8e-65
Identities = 231/275 (84%), Gaps = 17/275 (6%)
Strand=Plus/Minus
Query 1060 CGTTAAGTGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTG 1119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3361 CGTTAAATGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTG 3302
Query 1120 ACCGCCAGGGCTGAAAGTTGAAAC-TGTAACTTGATGCTAAATAtgtgtgtgtgtgtATA 1178
|||| | | | |||||| | || ||| || ||| | || ||||||||||||
Sbjct 3301 ACCGTTACCAC-CAGGGTTGAATCTTGAAAC----TG-TAACT-TG-ATGTGTGTGTATA 3250
Query 1179 CAAAACTTATGTAAGAAACATCTGAAGATGTCTCTGATCTTTGTGATTGTGAT---GATC 1235
|||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 3249 CAAAACATATGTAAGAAACATCTGAAGATGTCTCTGATCTTTGTGTTTGTCATCATGATC 3190
Query 1236 ATGCATGTCCTATCGTTGCGATGTATTTTATAAA-TGTTCGTCTGTAAGTTATTTAATAA 1294
|||||| || | ||||| | |||||||||||||| | || ||||||||||||||||||||
Sbjct 3189 ATGCATATCATGTCGTTACAATGTATTTTATAAAAT-TTGGTCTGTAAGTTATTTAATAA 3131
Query 1295 CTATGGCtttttgctttatctttttaattattttt 1329
||| || ||| |||| |||||||| || |||||
Sbjct 3130 CTACGG-TTT--GCTTCATCTTTTTGCTTTTTTTT 3099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5