BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19720.1
Length=2678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479490 jgi|Araly1|479490|fgenesh2_kg.3__2191__AT3G19720.1 3873 0.0
Ahg920395 jgi|Araly1|920395|scaffold_101676.1 89.8 1e-16
> Ahg479490 jgi|Araly1|479490|fgenesh2_kg.3__2191__AT3G19720.1
Length=2463
Score = 3873 bits (2097), Expect = 0.0
Identities = 2279/2365 (96%), Gaps = 20/2365 (1%)
Strand=Plus/Plus
Query 149 GTGACGGTTGAGGAAATGGCGGA--A-GAGGACGACGCTGCGATTGAGGAGCGGTGGAGT 205
|||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 16 GTGACGGTTGAGAAAATGTCGGAGGAGGAGGACGACGCTGCGATTGAGGAGCGGTGGAGT 75
Query 206 CTTTACGAAGCTTACAACGAGTTACACGCTTTGGCGCAGGAATTGGAGACGCCGTTCGAA 265
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CTTTACGAAGCTTACAATGAGTTACACGCTTTGGCGCAGGAATTGGAGACGCCGTTCGAA 135
Query 266 GCACCGGCGGTTCTTGTGGTGGGACAGCAGACCGACGGTAAAAGTGCGCTTGTGGAAGCT 325
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 136 GCACCGGCGGTTCTTGTGGTGGGACAGCAGACGGACGGTAAGAGTGCGCTTGTTGAAGCT 195
Query 326 CTTATGGGGTTTCAATTTAACCATGTCGGCGGCGGAACCAAGACTCGTCGGCCGATTACT 385
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 196 CTTATGGGGTTTCAATTTAACCACGTCGGCGGCGGAACCAAGACTCGCCGGCCGATTACT 255
Query 386 CTCCATATGAAGTACGATCCTCAGTGTCAATTCCCGCTTTGTCATCTCGGATCTGATGAT 445
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 256 CTTCATATGAAGTACGATCCTCAGTGTCAATTCCCGCTTTGCCATCTCGGATCTGATGAC 315
Query 446 GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGGCATATATTGAGGCTGAG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 316 GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGGCATATATTGAAGCCGAG 375
Query 506 AACATGAGGCTGGAGCAAGAGCCATGTAGCCCATTCTCTGCAAAGGAGATTATTGTGAAA 565
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 376 AACATGAGGCTGGAGCAAGAGCCA--T-GCCCATTCTCTGCCAAGGAGATTATTGTGAAA 432
Query 566 GTCCAGTATAAGTATTGTCCAAACCTTACCATCATTGATACACCTGGACTTATTGCTCCT 625
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 433 GTGCAGTATAAGTATTGTCCCAACCTTACCATCATTGATACACCTGGACTTATAGCTCCT 492
Query 626 GCACCAGGACTGAAAAACCGAGCTCTTCAGGTTCAAGCACGGGCTGTGGAAGCTCTAGTC 685
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 GCACCAGGATTGAAAAACCGAGCTCTCCAGGTTCAAGCACGGGCTGTGGAAGCTCTAGTC 552
Query 686 CGAGCAAAGATGCAACACAAAGAGTTCATCATTTTATGCCTCGAAGATAGCAGTGACTGG 745
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 553 CGAGCAAAGATGCAACACAAAGAGTTCATTATTTTATGCCTCGAAGATAGCAGTGACTGG 612
Query 746 AGCATTGCAACCACTCGAAGGATAGTGATGCAAGTTGATCCTGAGCTTTCTAGGACAATT 805
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AGCATTGCAACTACTCGAAGGATAGTGATGCAAGTTGATCCTGAGCTTTCTAGGACAATT 672
Query 806 GTTGTTTCTACAAAGCTTGACACTAAAATCCCTCAATTCTCATGTTCATCTGACGTGGAA 865
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 673 GTTGTTTCTACAAAGCTTGACACCAAAATCCCTCAATTCTCATGTTCATCTGACGTGGAA 732
Query 866 GTCTTTCTCTCACCTCCTGCAAGCGCACTTGACAGCTCCTTATTGGGCGATTCTCCTTTT 925
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GTCTTCCTCTCACCTCCTGCAAGCGCACTTGACAGCTCCTTATTGGGCGATTCTCCTTTT 792
Query 926 TTCACGTCTGTGCCTTCTGGAAGAGTTGGCTATGGACAGGATTCAGTGTATAAGTCTAAT 985
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 793 TTCACGTCTGTGCCTTCTGGAAGAGTTGGTTATGGACAGGATTCAGTATATAAGTCTAAT 852
Query 986 GACGAGTTCAAACAGGCTGTGTCACTTAGAGAAATGGAAGACATTGCATCTTTAGAGAAG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GACGAGTTCAAACAGGCTGTGTCACTTAGAGAAATGGAAGACATTGCATCTTTAGAGAAG 912
Query 1046 AAGTTGGGCCGTTTACTGACAAAACAGGAAAAGAGTAGGATTGGCATCAGTAAACTGAGG 1105
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AAGTTGGGCCGTTTGCTGACAAAACAGGAAAAGAGTAGGATTGGCATCAGTAAACTGAGG 972
Query 1106 TTGTTTCTGGAAGAACTACTCTGGAAAAGGTACAAAGAGAGTGTTCCATTGATCATTCCA 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TTGTTTCTGGAAGAACTACTCTGGAAAAGGTACAAAGAGAGTGTTCCATTGATCATTCCA 1032
Query 1166 CTGTTAGGAAAGGAGTACCGCAGTACAGTCAGAAAGCTGGATACCGTGAGCAAGGAACTT 1225
||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1033 CTGTTAGGAAAAGAGTACCGCAGTACAGTCGGAAAGCTGGATACCGTTAGCAAGGAACTT 1092
Query 1226 AGCTCTTTGGATGAAGCAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTA 1285
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGCTCTTTAGATGAAGCAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTA 1152
Query 1286 ACCAAGTTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAATTTGGTGAG 1345
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1153 ACCAAGTTATCGCTGTTATTGAAAGGAACCGTTGTGGCCCCTCCTGATAAATTTGGTGAA 1212
Query 1346 ACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTT 1405
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACATTGCAAGATGAAAGGGCACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTC 1272
Query 1406 TCACATAAGCTAATACCGAATGCAGGGATGCGTCTCTATGGGGGTGCACAATATCACCGT 1465
|||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1273 CCACATAAGCTAATACCAAATGCAGGGATGCGTCTTTATGGGGGTGCGCAGTATCACCGT 1332
Query 1466 GCCATGGCTGAGTTTCGTTTTCTAGTTGGTGCTATCAAATGTCCCCCAATAACGA-GGGA 1524
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1333 GCCATGGCCGAGTTTCGTTTTCTAGTTGGTGCTATCAAATGTCCCCCAATAAC-ACGGGA 1391
Query 1525 GGAAATTGTAAATGCATGTGGAGTTGAGGATATTCATGATGGAACAAACTATTCCAGAAC 1584
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1392 GGAAATTGTAAATGCATGTGGAGTTGAAGATATTCATGATGGAACAAACTATTCCAGAAC 1451
Query 1585 AGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAGTT 1644
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1452 AGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAAACGTTTGAACCTTTCCTTCATCAGTT 1511
Query 1645 AGGGGCGAGGCTTCTACACATTCTCAAGAGATTGCTTCCAATTTCTGTATATCTTCTTCA 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 GGGGGCGAGGCTTCTACACATTCTCAAGAGATTGCTTCCAATTTCTGTATATCTTCTTCA 1571
Query 1705 GAAAGAAGGTGAATATTTAAGTGGGCATGAGGTGTTTCTCAAGCGGGTTGCTTCAGCATT 1764
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1572 GAAAGAAGGTGAATACTTAAGTGGGCATGAGGTGTTTCTCAAGCGGGTTGCTTCAGCTTT 1631
Query 1765 CAACAGTTTTGTGGAGTCCACAGAAAAATCATGTCGTGACAAATGTATGGAGGATTTAGC 1824
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1632 CAACAGTTTTGTGGAGTCCACAGAAAAATCATGTCGTGACAAATGTATGGAGGACTTAGC 1691
Query 1825 AAGTACAACTCGCTATGTTACATGGTCTCTTCACAACAAGAACCGAGCTGGTCTACGTCA 1884
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 AAGCACGACTCGCTATGTTACATGGTCTCTTCACAACAAGAACCGAGCTGGTCTACGTCA 1751
Query 1885 ATTCTTGGACTCATTTGGTGGAACAGAGCATAAT-ACGACATCAGGTAATGCCATAGGAT 1943
|||||||||||||||||| ||||||||||| | | || ||||||||||||||||||||||
Sbjct 1752 ATTCTTGGACTCATTTGGCGGAACAGAGCA-ACTTACTACATCAGGTAATGCCATAGGAT 1810
Query 1944 TTAGTCTTCCCCAAGATGCATTAGGTGGCACAACAGACACCAAG-TCAAGATCAGATGTA 2002
|||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 1811 TTAGTCTTCCCCAAGATGCACCAGGTGGCACAACAGACACAAAGGT-AAGATCAGATGTA 1869
Query 2003 AAGCTAAGCCATCTCGCCTCAAACATCGATTCAGGTTCCAGTATTCAGACAACAGAAATG 2062
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1870 AAGCTAAGCCATCTCGCCTCAAACATCGATTCAGGTTCAAGTATTCAGACAACAGAAATG 1929
Query 2063 CGGTTGGCTGATCTTCTAGATAGCACACTTTGGAACCGCAAGCTTGCTCCTTCCTCTGAG 2122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1930 CGGTTGGCTGATCTTCTAGATAGCACGCTTTGGAACCGCAAGCTTGCTCCTTCCTCTGAG 1989
Query 2123 AGAATTGTGTACGCATTGGTCCAACAGATATTCCAGGGCATACGAGAGTACTTTCTCGCC 2182
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1990 AGAATTGTGTACGCATTAGTCCAACAGATATTCCAGGGCATACGAGAATACTTTCTCGCC 2049
Query 2183 TCTGCTGAGTTAAAGTTCAACTGTTTTCTTCTAATGCCCATCGTTGATAAGTTACCTGCT 2242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2050 TCTGCTGAGTTAAAGTTCAACTGTTTTCTTCTAATGCCCATTGTTGATAAGTTACCTGCT 2109
Query 2243 CTTCTCCGGGAAGAGTTGGAAAACGCATTTGAAGACGACCTCGATAGTATCTTCGACATC 2302
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 CTTCTCCGGGAGGAGTTGGAAAACGCATTTGAAGACGACCTCGATAGTATCTTCGACATC 2169
Query 2303 ACGAATCTCCGGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGG 2362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2170 ACGAATCTCCGGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTGAGAAGG 2229
Query 2363 ATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCATGAATTT 2422
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2230 ATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCACGAATTT 2289
Query 2423 GCTCAAAATCTAAAGGCTCCTTCGGTGCAGCATTGAGTGACTCAAGTTCAATATTGCTTA 2482
|||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||
Sbjct 2290 GCTCAAAATCTAAAGGCTCCTTGGGTGCAGCA--G--TGAC--AAGTTCAATATTGCTTA 2343
Query 2483 ATTAT-ATTAGGTTAAGAAACAATC 2506
|| || |||||||||||||||||||
Sbjct 2344 AT-ATTATTAGGTTAAGAAACAATC 2367
> Ahg920395 jgi|Araly1|920395|scaffold_101676.1
Length=211
Score = 89.8 bits (48), Expect = 1e-16
Identities = 72/83 (87%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 185 GCGATTGAGGAGCGGTGGAGTCTTTACGAAGCTTACAACGAGTTACACGCTTTGGCGCAG 244
||||||||||||||||||||||||||||| ||||| || |||| | | |||||||||||
Sbjct 87 GCGATTGAGGAGCGGTGGAGTCTTTACGAGGCTTATAATGAGT--C-C-CTTTGGCGCAG 142
Query 245 GAATTGGAGACGCCGTTCGAAGC 267
||||| |||||| ||| | ||||
Sbjct 143 GAATTCGAGACGTCGTCCAAAGC 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101015329740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5