BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19740.1
Length=3322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479491 jgi|Araly1|479491|fgenesh2_kg.3__2192__AT3G19740.1 5057 0.0
Ahg923455 jgi|Araly1|923455|scaffold_104736.1 1810 0.0
> Ahg479491 jgi|Araly1|479491|fgenesh2_kg.3__2192__AT3G19740.1
Length=3293
Score = 5057 bits (2738), Expect = 0.0
Identities = 3072/3230 (95%), Gaps = 36/3230 (1%)
Strand=Plus/Plus
Query 25 CAGCTTCAGAAGAAGAACCTACAGACTT-TAGATCGGTCTTTAtctctctctcctctgtc 83
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1 CAGCTTCAGAAGAAGAACCTACAGACTTATAGATCGGTC--TCTCTCTCTCTCCTCTGTC 58
Query 84 gggattttctctctcttctTCACCCTATCTCGTTCCTAATTACATCTCCTCTTTGCACCA 143
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 59 GGGATTTTCTCTCTCTTCTTCACCCTATCTCGTTCCTGGTTACATCTCCTCTTTGCGCCA 118
Query 144 AGCCTGATTCTTAGAGCTTGGGGGATGAATAGAACCAGTTTTGTTGTCCATCTCTGTTAA 203
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||
Sbjct 119 AGCCTGATTCTTAGAGCTTGGGGAATGAATAGAACTGGTTTTGTTGTTCATCTCTCTTAA 178
Query 204 ACG-T-TATAT-TGGAAGAGAAGGGACTTTGTGATGTATACAAGGGCATTAAAGAGGAAC 260
| | | ||| | | ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 AGGTTCTATTTATAGAAGACAAGGGGCTTTGTGATGTATACAAGGGCATTAAAGAGGAAC 238
Query 261 CAGAGATGGGGTTTGGTATTGCAGCAAGCCAAGTACTTAGTTAGGCCAGTCGTTCGTGAC 320
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 239 CAGAGATGGGGTTTGGTATTGCAGCAAGCCAAATACTTAGTTAGGCCAGCCGTTCGTGAC 298
Query 321 TATACGGTTTCCAGATATTGTGGATTCACAAATAAATTAACCAATAGTGAAAATTTGACA 380
|||||||||||||||| |||||||||||||||| | ||||| ||||||| ||||||||||
Sbjct 299 TATACGGTTTCCAGATCTTGTGGATTCACAAATCATTTAACTAATAGTGCAAATTTGACA 358
Query 381 AGAAAGTCTCTACTTGGTTCATTTTCTCCCCGCGGTGGTACTATTGCCTCGGGAAATCAT 440
|||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 359 AGAACGTCTCTACTTGGTTCATTTTCTCCCTGCGGTGGTACTATTGCCTCGGGGAATTGT 418
Query 441 TTAAGTATTTTGAAGAATAGCCAGTTGCGTAGTTTTAGTTCTGAGGGTGATGGAAGGAAT 500
|||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 419 TTAAGTGTTTTGAAGAATAGCCAGTTGCGTTGTTTTAGTTCTGAAGGTGATGGAAGGAAT 478
Query 501 GCTAGTGAGGATAAACATATCTCTTTGAACAAAGAGAATGGTGTAGATGATGGAAAAACC 560
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GCTAGTGAGGATAAACATATCTCTTTGAACAAAGGGAATGGTGTAGATGATGGAAAAACC 538
Query 561 GGGAAGGAGAAAAGTAATAACGGTGTTGGGCATTTGGATTCTCATGCTCAACTTGGAGAA 620
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGGAAGGAGAAAAGTAATAGCGGTGTTGGGCATTTGGATTCTCATGCTCAACTTGGAGAA 598
Query 621 CAAGACCAAATAGAATGGCTCAATAATGAGAAGCTTGCTAGTGAATGCAAAAAGAAGGAG 680
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGACCAAATAGAATGGCTCAATAATGAGAAGCTTGCTAGTGAATGCAAAAAGAAGGAG 658
Query 681 TCACCTTTCGTTAATAGACGAGAAAGATTCAAAAACGAGTTCTTACGGAGAATCCAACCT 740
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCACCTTTCCTTAATAGACGAGAAAGATTCAAAAACGAGTTCTTACGGAGAATCCAACCT 718
Query 741 TGGGAAAAAATACAGCTTTCTTGGGAGACCTTCCCTTACTACATCCACGACCACACGAAA 800
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 719 TGGGAAAAAATACAGCTTTCGTGGGAGACCTTCCCTTACTATATCCACGACCACACGAAA 778
Query 801 GATATTTTGGTGGAATGTGTTACCTCACATATAAGACAAAAGAATGCCGCTTCCATATAT 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATATTTTGGTGGAATGTGTTACCTCACATATAAGACAAAAGAATGCCGCTTCCATATAT 838
Query 861 GGTGCCCGTTTAGATTCTTCAAGTGGAAGAATATTGCTCCAGAGTGTTCCAGGTACTGAG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTGCCCGTTTAGATTCTTCAAGTGGAAGAATATTGCTCCAGAGTGTTCCAGGTACTGAG 898
Query 921 CTTTACCGGGAGAGGTTGGTACGAGCACTTGCTCGAGATGTACAAGTTCCCCTGTTGGTT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTTTACCGGGAGAGGTTGGTACGAGCACTTGCTCGAGATGTACAAGTTCCCCTGTTGGTT 958
Query 981 CTTGACAGCAGCGTTCTTGCCCCATATGATTTTGCTGATGACTACAATGAAGAATCTGAA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 CTTGACAGCAGCGTTCTTGCCCCATATGATTTTGCTGATGACTACAATGAAGATTCTGAA 1018
Query 1041 TCTGATGGTGAGAACGCAGAAGCGGAAGCAGATGAATCCACGACAGAGTCTGATGCTGAG 1100
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1019 TCTGATGGTGAGAATGCAGAAGCGGAAGCAGATGAGTCCACGACAGAGTCTGAAGCTGAG 1078
Query 1101 GAAGATTCTAGTGCTCAGAGCGAAGAGGATTCTGAAGCGAAAGCAGATGGGAGTGACAGT 1160
||||| ||| ||||||| ||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 1079 GAAGAATCTGGTGCTCATAGCGAGGAGGATTCTGAAGCGAAAACAGATGGGAGTGACAAT 1138
Query 1161 GAGGAAGCTTGTCTCGAGGTTTCTGAGGAAGCTATCAAGAAAATTGTGCCAAAACTTGAA 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAGGAAGCTTGTCTCGAGGTTTCTGAGGAAGCTATCAAGAAAATTGTGCCAAAACTTGAG 1198
Query 1221 GAGTTCGAAAAGCTAGTAGCAGAAGAACTACA------TGGTGAAGCTTGCGAAGCAGCA 1274
|||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 1199 GAGTTCGAAAAGCTAGTAGCAGAAGAACTACATGGTTCTGGTGAAGCTTGCGAGGCGGCA 1258
Query 1275 GCTGTTGAGCATTCTGATAAAGCCAGGCGACCGGCAAAGAAAGGAGATCGTGTAAAATAT 1334
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCTGTTGAGCCTTCTGAAAAAGCCAGGCGACCGGCAAAGAAAGGAGATCGTGTAAAATAT 1318
Query 1335 GTTGGACCTTCTAAGAAGGCTGATGCAAAGCACAGGCCATTATCTAGTGGACAACGTGGA 1394
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 GTTGGGCCTTCTAAGAAGGCTGATGCAAAGCACAGGCCATTATCTAGCGGACAACGTGGA 1378
Query 1395 GAGGTCTATGAGGTGAATGGGAATCGTGTTGCAGTCATATTTGACATTGGAGGTGATACA 1454
||||||||||||||||||||||| |||||||| ||||||||||||| || |||||| |||
Sbjct 1379 GAGGTCTATGAGGTGAATGGGAACCGTGTTGCGGTCATATTTGACAATGTAGGTGAGACA 1438
Query 1455 TCATCAGAGGGAGGTGACAAGAAATCAACAGAACACTCTCATAAGCTACATATGCACTGG 1514
|||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1439 TCATCAGAGGGAAACGAGAAGAAATCAACAGAGCACTCCCATAAGCTACATATGCACTGG 1498
Query 1515 ATAGATG-T---T------------G-G-AG----A--CCTAAAGCATGATTTGGATATG 1550
||||||| | | | | || | ||||||||||||||||||||||
Sbjct 1499 ATAGATGCTAACTTACATATTTTCTGCGCAGTCGGAAACCTAAAGCATGATTTGGATATG 1558
Query 1551 CAGGCAGAAGATGGCTATATCGCCTTGGAGGCTTTAAGTGAGGTTTTACACTCCACACAA 1610
|||||||||||||||||||||||| |||||||||||||||||||||| || ||| | |||
Sbjct 1559 CAGGCAGAAGATGGCTATATCGCCATGGAGGCTTTAAGTGAGGTTTTGCAATCCTCGCAA 1618
Query 1611 CCACTTATTGTCTATTTTCCCGACTCGTCCCAGTGGTTGTCTCGAGCTGTACCTAAGTCA 1670
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1619 CCACTTATTGTCTATTTTCCCGACTCGTCGCAGTGGTTGTCTAGAGCTGTACCTAAGTCA 1678
Query 1671 AAACAAAATGAGTTTGTAGACAAAGTTCAGGAAATGTTTGATAAATTGTCAAGTCCTGTT 1730
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1679 AAACAAAATGAGTTTGTAAACAAAGTTCAGGAAATGTTTGATAAATTGTCAGGTCCTGTT 1738
Query 1731 GTAATGATCTGTGGACGAAACAAGATTGAAACAGGCTCAAAAGAGAGAGAGAAATTTACG 1790
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1739 GTAATGATCTGTGGACGAAACAAGACTGAAACAGGCTCAAAAGAGAGAGAGAAATTTACG 1798
Query 1791 ATGATACTCCCAAACTTTGGCCGTCTTGCGAAACTGCCCCTTCCGTTGAAGCGTCTCACT 1850
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1799 ATGATACTCCCAAACTTCGGCCGTCTTGGGAAACTGCCCCTTCCGTTGAAGCATCTCACT 1858
Query 1851 GAGGGACTCACGGGAAGGAAAACATCAGAGGATAATGAGATATACAAGCTCTTCACTAAT 1910
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GAAGGACTCACGGGAAGGAAAACATCAGAGGATAATGAGATATACAAGCTCTTCACTAAT 1918
Query 1911 GTTATGAACCTAGTCCCTCCTAAGGAAGAAGAGAACCTCATAGTATTCAACAAACAACTT 1970
|||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1919 GTTATGAACCTACTCCCTCCTAAGGAAGAAGATAACCTCGTAGTATTCAACAAACAACTT 1978
Query 1971 GGAGAAGATAGAAGAATTGTGATGTCACGGAGCAATTTAAATGAGCTACTTAAGGCGCTT 2030
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GGAGAAGACAGAAGAATTGTGATGTCACGGAGCAATTTAAATGAGCTACTTAAGGCGCTT 2038
Query 2031 GAGGAAAACGAGTTATTGTGCACTGACTTGTACCAAGTGAACACCGATGGCGTGATATTG 2090
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 GAGGAAAACGAGTTTTTGTGCACTGACTTGTACCAAGTGAACACCGATGGCGTGATATTG 2098
Query 2091 ACAAAGCAAAGAGCGGAGAAAGTTATCGGTTGGGCCAGAAACCACTATTTATCTTCTTGT 2150
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2099 ACAAAGCAAAGAGCGGAGAAAGTTATTGGCTGGGCCAGAAACCACTATTTATCTTCTTGT 2158
Query 2151 CCTAGCCCATCGATTAAAGAGGGCCGCCTGATTCTCCCCCGTGAAAGCATTGAGATTTCA 2210
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2159 CCTAGCCCATCGATTAAAGAAGGCCGCCTGATTCTGCCCCGTGAAAGCATTGAGATTTCA 2218
Query 2211 GTTAAAAGGTTAAAGGCACAAGAAGATATTTCTCGAAAGCCCACACAAAACTTGAAGAAT 2270
||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2219 GTTAAAAGGCTAAAGGCACAAGAAGATATTTCTCGGAAGCCCACACATAACTTGAAGAAT 2278
Query 2271 ATTGCGAAGGATGAGTTTGAAACCAATTTTGTCTCAGCCGTGGTTGCTCCTGGAGAAATT 2330
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 ATTGCTAAGGATGAGTACGAAACCAATTTTGTCTCAGCCGTGGTTGCTCCTGGAGAAATT 2338
Query 2331 GGGGTAAAGTTTGACGACATTGGTGCTCTTGAACATGTGAAAAAGACACTAAATGAGTTA 2390
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2339 GGGGTAAAGTTTGACGACATTGGTGCTCTTGAACATGTGAAAAAGGCACTAAATGAGTTG 2398
Query 2391 GTTATTCTTCCCATGAGAAGGCCAGAGCTTTTCACCCGTGGAAATCTCTTGCGGCCATGT 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 GTTATTCTTCCCATGAGAAGGCCAGAGCTTTTCACCCGTGGAAATCTCTTGCGGCCATGT 2458
Query 2451 AAAGGCATATTGCTTTTTGGTCCTCCGGGTACGGGTAAAACGCTGCTTGCCAAGGCGCTT 2510
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 2459 AAAGGCATATTGCTTTTTGGTCCTCCTGGTACGGGTAAAACACTACTTGCCAAGGCGCTT 2518
Query 2511 GCAACAGAAGCTGGGGCAAACTTCATTAGCATAACTGGCTCAACGCTTACCTCAAAGTGG 2570
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 GCAACAGAAGCTGGGGCGAACTTCATTAGCATAACTGGCTCAACGCTTACCTCAAAGTGG 2578
Query 2571 TTTGGAGATGCAGAGAAGCTCACGAAGGCTTTGTTCTCTTTTGCAAGCAAACTAGCCCCC 2630
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2579 TTTGGAGATGCAGAGAAGCTCACAAAGGCTTTGTTCTCCTTTGCAAGCAAACTAGCCCCT 2638
Query 2631 GTCATTATATTTGTTGATGAGGTTGACAGTTTGTTGGGTGCTCGTGGTGGTGCTTTTGAG 2690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 GTCATTATATTTGTTGATGAGGTTGACAGTTTGTTGGGTGCTCGTGGTGGTGCTTTTGAG 2698
Query 2691 CACGAGGCAACACGAAGAATGAGAAATGAGTTTATGGCAGCTTGGGATGGACTCAGATCA 2750
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 CATGAGGCAACCCGAAGAATGAGAAATGAGTTTATGGCAGCTTGGGATGGACTCAGATCA 2758
Query 2751 AAAGATAGCCAAAGGATTCTCATTCTCGGTGCCACCAACCGACCTTTTGATCTTGATGAC 2810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2759 AAAGATAGCCAAAGGATTCTCATTCTCGGTGCCACCAACCGACCTTTTGATCTTGATGAC 2818
Query 2811 GCTGTCATTCGTAGGCTACCAAGACGGATATATGTGGATTTACCAGATGCGGAAAACCGG 2870
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2819 GCTGTCATTCGTAGGCTACCAAGACGGATATATGTCGATTTACCAGATGCGGAAAACCGG 2878
Query 2871 TTGAAGATATTGAAGATATTTCTGACACCAGAAAATCTTGAAACTGGTTTCGAGTTTGAT 2930
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2879 TTGAAGATTTTGAAGATATTCCTGACACCAGAAAATCTTGAAACTGGTTTCGAGTTTGAA 2938
Query 2931 AAACTTGCAAAGGAAACCGAAGGATATTCAGGAAGCGATCTAAAGAATCTATGCATAGCA 2990
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2939 AAACTTGCAAAGGAAACCGAAGGATATTCAGGAAGCGATCTGAAGAATCTATGCATAGCT 2998
Query 2991 GCTGCATACAGACCTGTTCAAGAATTGTTACAAGAAGAAAACAAGGACTCGGTAACAAAT 3050
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2999 GCTGCATACAGACCTGTGCAAGAATTGTTACAAGAAGAAAACAAGGACTCGGTAGCAAAT 3058
Query 3051 GCGTCCCCTGATCTACGACCACTGAGTTTGGACGACTTCATTCAATCCAAAGCTAAGGTA 3110
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3059 GCATCCCCTGATCTACGACCACTGAGTTTGGACGACTTCATTCAATCTAAAGCTAAGGTA 3118
Query 3111 AGTCCGTCAGTGGCATACGACGCGACGACAATGAACGAATTGAGAAAATGGAACGAGCAA 3170
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 3119 AGTCCATCTGTGGCATACGACGCAACCACAATGAACGAATTGAGAAAATGGAACGAGCAA 3178
Query 3171 TACGGTGAAGGAGGGACCCGAACTAAGTCTCCTTTCGGCTTCTAAGCCAC 3220
||||||||||||||||| || || ||||||||||| ||||||||||||||
Sbjct 3179 TACGGTGAAGGAGGGACACGGACCAAGTCTCCTTTTGGCTTCTAAGCCAC 3228
Score = 104 bits (56), Expect = 4e-21
Identities = 63/66 (95%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 3246 CTCTTTAACAATAGAACTCGTTGATTTGTT-CCATGTCGTAACAATAAAAGTCACTATTT 3304
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 3228 CTCTTTAACAATAGAACTCGTTGATTTTTTTCCATGTCGTAACAATAAAAGTCACTATTT 3287
Query 3305 CAATTT 3310
|||||
Sbjct 3288 TAATTT 3293
> Ahg923455 jgi|Araly1|923455|scaffold_104736.1
Length=3050
Score = 1810 bits (980), Expect = 0.0
Identities = 1582/1872 (85%), Gaps = 43/1872 (2%)
Strand=Plus/Plus
Query 1367 CAGGCCATTATCTAGTGGACAACGTGGAGAGGTCTATGAGGTGAATGGGAATCGTGTTGC 1426
||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 1182 CAGGCCATTGTCTAGTGGACAACGTGGAGAGGTATATGAGGTGAGTGGGAACCGTGTTGC 1241
Query 1427 AGTCATATTTGACAT-TGG-AGGTGATACATCATCAGAGGGAGGTGACAAGAAA-TCAAC 1483
|||||||||||| | ||| | ||||| | || |||||||| |||| || ||| || |
Sbjct 1242 TGTCATATTTGAC-TATGGTA-ATGATAAAACAACAGAGGGAAGTGAGAA-AAAGCCAGC 1298
Query 1484 AGAACA-CTCTCATAAGCTACATATGCACTGGATAGATGTTG-GAGACCTAAAGCATGAT 1541
||| || | | || | | ||| ||| |||||| |||||| || |||| | ||| | |||
Sbjct 1299 AGAGCAGC-CCCAGATGTTACCTATCCACTGGGTAGATG-TGAAAGACGTGAAGTACGAT 1356
Query 1542 TTGGATATGCAGGCAGAAGATGGCTATATCGCCT-TGGAGGCTTTAAGTGAGGTTTTACA 1600
|||||||||||||||| |||||||| || | || |||| ||||||| ||||||||| ||
Sbjct 1357 TTGGATATGCAGGCAGTTGATGGCTACATTG-CTATGGAAGCTTTAAATGAGGTTTTGCA 1415
Query 1601 CTCCACACAACCACTTATTGTCTATTTTCCCGACTCGTCCCAGTGGTTGTCTCGAGCTGT 1660
|||| ||||||||||| ||||||||||| |||||||| |||||||||||| |||||||
Sbjct 1416 ATCCATTCAACCACTTATAGTCTATTTTCCAGACTCGTCACAGTGGTTGTCTAGAGCTGT 1475
Query 1661 ACCTAAGTCAAAACAAAATGAGTTTGTAGACAAAGTTCAGGAAATGTTTGATAAATTGTC 1720
| |||| | | || ||| || ||||||||||||||||||||||||||| ||||| | ||
Sbjct 1476 TCTTAAGACGAGACGAAAGGAATTTGTAGACAAAGTTCAGGAAATGTTTAATAAACTATC 1535
Query 1721 AAGTCCTG-TTGTAATGATCTGTGGACGA-AACAAGATTGAAACAGGCTCAAAAGAGAGA 1778
| |||| | |||| ||||||||||| | | |||||||| ||||||||||||||||| |||
Sbjct 1536 AGGTCC-GATTGTTATGATCTGTGGGC-AGAACAAGATAGAAACAGGCTCAAAAGAAAGA 1593
Query 1779 GAGAAATTTACGATGATACTCCCAAACTTTGGCCGTCTTGCGAAACTGCCCCTTCCGTTG 1838
|||||||| |||||| |||||||||||||| |||| |||| ||| ||||| ||||| |||
Sbjct 1594 GAGAAATTCACGATGGTACTCCCAAACTTTAGCCGACTTGTGAAGCTGCCTCTTCCCTTG 1653
Query 1839 AAGCGTCTCACTGAGGGACTCACGGGAAGGAAAACATCAGAGGATAATGAGATATACAAG 1898
||| | || ||||||||| |||||||| |||||| ||||||||| |||||||||||||||
Sbjct 1654 AAGGGCCTAACTGAGGGATTCACGGGAGGGAAAAAATCAGAGGAGAATGAGATATACAAG 1713
Query 1899 CTCTTCACTAATGTTATGAACCTA-GTCCCTCCTAAGGAAGAAGAGAACCTCATAGTATT 1957
|| ||||||||||||||| |||| | ||||| ||||| ||||| | ||||| | ||||
Sbjct 1714 CTTTTCACTAATGTTATGCGCCTACAT-CCTCCGAAGGAGGAAGATACCCTCAGATTATT 1772
Query 1958 CAACAAACAACTTGGAGAAGATAGAAGAATTGTGATGTCACGGAGCAATTTAAATGAGCT 2017
||| |||||||| ||||||||||| ||||||||||| || ||||||||| |||||||| |
Sbjct 1773 CAAGAAACAACTAGGAGAAGATAGGAGAATTGTGATATCGCGGAGCAATATAAATGAGTT 1832
Query 2018 ACTTAAGGCGCTTGAGGAAAACGAGTTATTGTGCACTGACTTGTACCAAGTGAACACCGA 2077
|| ||||| ||||| ||| | || ||||| ||||| |||||||| ||||||||||||||
Sbjct 1833 GCTAAAGGCACTTGAAGAACATGAATTATTATGCACAGACTTGTATCAAGTGAACACCGA 1892
Query 2078 TGGCGTGATATTGACAAAGCAAAGAGCGGAGAAAGTTATCGGTTGGGCCAGAAACCACTA 2137
||| ||||||||||||||||||| ||| ||||||| ||| || ||||||| ||| |||||
Sbjct 1893 TGGGGTGATATTGACAAAGCAAAAAGCAGAGAAAGCTATTGGCTGGGCCAAAAATCACTA 1952
Query 2138 TTTATCTTCTTGTCCTAG-CCCATCGATTAAA-GAGGGCCGCCTGAT-TCTCCCCCGTGA 2194
|||| |||||||||| || ||||| | ||||| || || ||| || | ||| || |||||
Sbjct 1953 TTTAGCTTCTTGTCC-AGACCCATTGGTTAAAGGA-GGTCGCTTG-TCTCTGCCTCGTGA 2009
Query 2195 AAGCATTGAGATTTCAGTTAAAAGGTTAAAGGCACA--AGAAGATATTTCTCGAAAGCCC 2252
|||| ||||||| ||| || ||||| || | | | |||||||| ||||| |||||||
Sbjct 2010 AAGCCTTGAGATATCAATTGCGAGGTT-AA-GAAAATTAGAAGATAATTCTCTAAAGCCC 2067
Query 2253 ACACAAAACTTGAAGAATATTGCGAAGGATGAGTTTGAAACCAATTTTGTCTCAGCCGTG 2312
| |||||||||||||||||||| |||||||||| ||||| ||||||||||| || |||
Sbjct 2068 TCGCAAAACTTGAAGAATATTGCAAAGGATGAGTATGAAAGAAATTTTGTCTCGGCTGTG 2127
Query 2313 GTTGCTCCTGGAGAAATTGGGGT-AAAGTTTGACGACATTGGTGCTCTTGAACATGTGAA 2371
||||| ||||| ||||| || || ||| ||||| || ||||| ||||| ||| | || ||
Sbjct 2128 GTTGCGCCTGGTGAAATAGGCGTCAAA-TTTGAAGATATTGGGGCTCTCGAAGACGTTAA 2186
Query 2372 AAAGACACTAAATGAGTTAGTTATTCTTCCCATGAGAAGGCCAGAGCTTTTCACCCGTGG 2431
|||| || |||||||| | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 2187 AAAGGCATTAAATGAGCTGGTTATTCTTCCCATGAGAAGGCCAGAGCTTTTCTCGCGTGG 2246
Query 2432 AAATCTCTTGCGGCCATGTAAAGGCATATTGCTTTTTGGTCCTCCGGGTACGGGTAAAAC 2491
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 2247 AAATCTCTTGCGGCCCTGTAAAGGAATATTGCTTTTTGGTCCTCCTGGAACGGGTAAGAC 2306
Query 2492 GCTGCTTGCCAAGGCGCTTGCAACAGAAGCTGGGGCAAACTTCATTAGCATAACTGGCTC 2551
||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2307 GCTCCTTGCTAAGGCACTTGCAACTGAAGCTGGAGCAAACTTCATTAGCATAACTGGCTC 2366
Query 2552 AACGCTTACCTCAAAGTGGTTTGGAGATGCAGAGAAGCTCACGAAGGCTTTGTTCTCTTT 2611
||| ||||| ||||||||||| |||||||||||||||||||| |||||| | || || ||
Sbjct 2367 AACACTTACATCAAAGTGGTTCGGAGATGCAGAGAAGCTCACTAAGGCTCTCTTTTCCTT 2426
Query 2612 TGCAAGCAAACTAGCCCCCGTCATTATATTTGTTGATGAGGTTGACAGTTTGTTGGGTGC 2671
||| | ||| ||||| || || ||||| |||||||||||| | |||||| || | |||||
Sbjct 2427 TGCCACCAAGCTAGCACCTGTAATTATTTTTGTTGATGAGATCGACAGTCTGCTAGGTGC 2486
Query 2672 TCGTGGTGG-TGCTTTTGAGCACGAGGCAAC-ACGAAGAATGAGAAATGAGTTTATGGCA 2729
||||||||| | ||| |||||||| || || | ||||||||||||||||||| ||||||
Sbjct 2487 TCGTGGTGGCT-CTTCCGAGCACGAAGCTACCA-GAAGAATGAGAAATGAGTTCATGGCA 2544
Query 2730 GCTTGGGATGGACTCAGATCAAAAGATAGCCAAAGGATTCTCATTCTCGGTGCCACCAAC 2789
|||||||| || ||||| |||||||| || |||||||| |||||||| ||||||||||||
Sbjct 2545 GCTTGGGACGGGCTCAGGTCAAAAGACAGTCAAAGGATCCTCATTCTTGGTGCCACCAAC 2604
Query 2790 CGACCTTTTGATCTTGATGACGCTGTCATTCGTAGGCTACCAAGACGGATATATGTGGAT 2849
|| || |||||||||||||| || ||||||||| | |||||||||||||||||||| ||
Sbjct 2605 CGTCCCTTTGATCTTGATGATGCGGTCATTCGTCGTCTACCAAGACGGATATATGTCGAC 2664
Query 2850 TTACCAGATGCGGAAAACCGGTTGAAGATATTGAAGATATTTCTGACACCAGAAAATCTT 2909
||||||||||| ||||||||||| |||||| |||| |||||||| || |||||||||||
Sbjct 2665 TTACCAGATGCCGAAAACCGGTTAAAGATACTGAAAATATTTCTAACTCCAGAAAATCTG 2724
Query 2910 GAAACTGGTTTCGAGTTTGATAAACTTGCAAAGGAAACCGAAGGATATTCAGGAAGCGAT 2969
||| | |||||| ||||||| ||||||||||||||||| ||||| ||||| || ||||||
Sbjct 2725 GAATCCGGTTTCCAGTTTGACAAACTTGCAAAGGAAACTGAAGGCTATTCCGGTAGCGAT 2784
Query 2970 CTAAAGAATCTATGCATAGCAGCTGCATACAGACCTGTTCAAGAATTGTTACAAGAAGAA 3029
|| |||||||||||||| || ||||| ||||| |||||||||||| ||||||||||||||
Sbjct 2785 CTGAAGAATCTATGCATTGCTGCTGCGTACAGGCCTGTTCAAGAACTGTTACAAGAAGAA 2844
Query 3030 -AACAAGGACTCGGTA-A-CA-AATGCGTCCCCTGATCTACGACCACTGAGTTTGGACGA 3085
|| |||| | | | | | || ||||| |||| |||||| | ||||||||||| ||
Sbjct 2845 CAA-AAGGG-T-GCAAGAGCGGAA-GCGTCTCCTGGTCTACGGTCGCTGAGTTTGGATGA 2900
Query 3086 CTTCATTCAATCCAAAGCTAAGGTAAGTCCGTCAGTGGCATACGACGCGACGACAATGAA 3145
||||||||| || ||||||||||| || || || ||||| ||||| ||||| || |||||
Sbjct 2901 CTTCATTCAGTCTAAAGCTAAGGTGAGCCCATCTGTGGCGTACGATGCGACAACGATGAA 2960
Query 3146 CGAATTGAGAAAATGGAACGAGCAATACGGTGAAGGAGGGACCCGAACTAAGTCTCCTTT 3205
||| ||||||||||||| |||||||||||||||||||||| | | || |||||||||||
Sbjct 2961 CGAGCTGAGAAAATGGAATGAGCAATACGGTGAAGGAGGGAGCAGGACAAAGTCTCCTTT 3020
Query 3206 CGGCTTCT-AAG 3216
||||||| |||
Sbjct 3021 TGGCTTCTGAAG 3032
Score = 579 bits (313), Expect = 6e-164
Identities = 913/1181 (77%), Gaps = 127/1181 (11%)
Strand=Plus/Plus
Query 234 ATGTATACAAGGGCATTAAAG-AGGAACCAGAGATGGGGTTTGGTATTGCAGCAAGCCAA 292
|||||||||||| || | ||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 22 ATGTATACAAGGACAAT-AAGAAGGAACCAGAGATGGGGTTTTGTATTGCAGCAAGACAA 80
Query 293 GTACTTAGT---TAGGCCAGTCG-TTCGTGACTATACGGTTT-CCAGATATTGTGGATTC 347
|||||||| |||||||| | |||||||| | || |||| ||| || | | ||| |
Sbjct 81 ATACTTAGTGAGGAGGCCAGT-GATTCGTGACCACACCGTTTCCCA-ATCTCCTAGATCC 138
Query 348 A-CA-A-ATAAATTAACCAATAGTGAAAATTTGACAAGAAAGTCTCTACTTGGTTCATTT 404
| || | ||| | ||| ||| | | ||||||||||||| | | | ||| |
Sbjct 139 ACCACATATATACTAA-CAA-A-T---CATTTGACAAGAAA--C-C-A------TCA--T 180
Query 405 TCTCCCCGCGGTGGTACTATTGCCTCGGGA-AATCATTTAAG-TATT-TTGAAGAATAGC 461
||| | | | | ||||||| || | | ||||||| |||| ||| ||| |||
Sbjct 181 TCT---C-C--T-G-----TTGCCTCTAGAGACT-ATTTAAGTTATTCTTG--GAACAGC 225
Query 462 CAGTTGCGTAGTTTTAGTTCTGAGGGTGATGGAAGGAATGCTAGTGAGGATAAACATATC 521
|| |||||| | ||||||||||| ||||||||||| |||||||||||||| | | | ||
Sbjct 226 CAATTGCGTCGGTTTAGTTCTGAAGGTGATGGAAGCAATGCTAGTGAGGACAGCCGTTTC 285
Query 522 TCTTTGAACAAAGAGAATGGTGTAGATGATGGAAAAACCGGGAAGGAGAAAAGTAATAAC 581
|| |||| ||||| || ||| | || |||| | | || |||| | | |
Sbjct 286 CCTCTGAATAAAGA-AA------AGACG--GG-AAAA----G-A-GA-AAAA-T-GTGTC 326
Query 582 -GGTGTTGGGCATTTGGATTCTCATGCTCAACTTGGAGAACAAGACCAAATAGAATGGCT 640
||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 327 TGGTGTTGAGCATTTTGATTCTCATGCTCAACTTGGAGAGCAAGACCAAATAGAATGGCT 386
Query 641 CAATAATGAGAAGCTTGCTAGTGAATGCAAAAAGAAGGAGTCACC-TTTCGTTAATAGAC 699
||| |||||||||||||| |||||| || | | ||||||||||| |||| |||||| ||
Sbjct 387 CAACAATGAGAAGCTTGCAAGTGAAAGC--AGA-AAGGAGTCACCTTTTC-TTAATAAAC 442
Query 700 GAGAAAGATTCAAAAACGAGTTCTTACGGAGAATCCAACCTTGGGAAAAAATACAGCTTT 759
||||| |||| || || |||||||| ||||| || ||||||||||||| |||||||| |
Sbjct 443 GAGAACGATTGAAGAATGAGTTCTTGCGGAGGATTCAACCTTGGGAAACTATACAGCTCT 502
Query 760 CTTGGGAGACCTTCCCTTACTACATCCACGACCACACGAAA-GATATTTTGGTGGAATGT 818
|||||||| | |||||||||||| ||||||| ||||| ||| |||| | |||||||||||
Sbjct 503 CTTGGGAGTCTTTCCCTTACTACGTCCACGAACACAC-AAAGGATACTCTGGTGGAATGT 561
Query 819 GTTACCTCACATA-T-AAGACAAAAGAATGCCGCTTCCATA-TATGGTGCCCGTTTAGAT 875
|||| |||||||| | || | ||||| ||| ||||| | |||||||| |||||||||
Sbjct 562 GTTAGCTCACATATTAAACAAAAAAGTATG--ATTTCCA-AGTATGGTGCTCGTTTAGAT 618
Query 876 TCTTCAAGTGGAAGAATATTGCTCCAGAGTGTTCCAGGTACTGAGCTTTACCGGGAGAGG 935
||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 619 TCTTCAAGTGGGAGAATACTGCTCCAGAGTGTTCCAGGCACTGAGCTCTACCGGGAGAGG 678
Query 936 TTGGTACGAGCACTTGCTCGAGATGTACAAGTTCCCCTGTTGGTTCTTGACAGCAGCGTT 995
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 679 TTGGTACGAGCACTTGCTCGAGATACACAAGTTCCCCTGTTGGTTCTTGACAGCAGCGTT 738
Query 996 CTTGCCCCATATGATTTTGCTGATGACTACAATGAAGAATCTGAATCTGATGGTGAGAAC 1055
||||| || || |||| ||||||||||||| ||||||| |||||||| |||| ||| |
Sbjct 739 CTTGCACCTTACGATTGTGCTGATGACTACCATGAAGAGTCTGAATCAGATGATGACATT 798
Query 1056 GCAGAAG-CGGAAGCAGATGAATCCACGACAGAGTCTGATGCTGAGGAAGATTCT-AGTG 1113
||||| | | || ||| || | ||| ||||||| || ||||||||||| | | ||
Sbjct 799 GCAGA-GTCAGAT-CAG-TG---C-ACGTCAGAGTCAGAAGCTGAGGAAGAAACCGA-TG 850
Query 1114 CT--CA--GA-GCGAAGAGGATTC--TGAAGCGAAAGC-AGATGGGAGTGAC-AGTGAGG 1164
| || || | || ||| | | |||||| |||| ||| || | |||| | ||| |
Sbjct 851 CAAACAATGATGAGACGAGTAG-CGGTGAAGC-AAAGATAGAAGGAACTGACGA-TGAAG 907
Query 1165 AA-GCT-TGTCTCGAGGTTTCTGAGGAAG-CTATCAAGAAAATTGTG-CCAAAACTTGAA 1220
|| | | | | | ||| ||||| |||||| | |||||||| ||| | || | | | ||
Sbjct 908 AACGATAT-T-TGGAGATTTCTAAGGAAGTCC-TCAAGAAACTTGGGGCCGACA-TAGAG 963
Query 1221 GAGT-TCGAAAAGCTAGTAG-CAGAAGAACTACATGG-T---GA-AGCT-TGC-GAAGCA 1271
|| | |||| ||| | | | | ||| ||||| |||| | || || | | | |||||
Sbjct 964 GA-TATCGAGAAGAGAAT-GTCGGAACAACTATATGGCTCTAGAGAGGTGT-CAGAAGCT 1020
Query 1272 GCAGCTGTTGAGCATTCTGATAAAGCCAGGCGACCGGCA-AAGAAAGGAGATCGTGTAAA 1330
||| ||||||| |||| ||||||||||| ||| || | ||||||||||| | ||||
Sbjct 1021 GCACCTGTTGATCATTGTGATAAAGCCAAGCGGCCT-CTTAAGAAAGGAGACCAAGTAAG 1079
Query 1331 ATATGTTGGACCTTCTAAGAAGG-CTGATGCAAAGCACAGG 1370
|||||||| || ||||||||| | || |||||||| |||
Sbjct 1080 GTATGTTGGGTCTCCTAAGAAGGAC-GAAGCAAAGCATAGG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125399703035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5