BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19760.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479492 jgi|Araly1|479492|fgenesh2_kg.3__2193__AT3G19760.1 2362 0.0
Ahg478254 jgi|Araly1|478254|fgenesh2_kg.3__955__AT3G19760.1 1378 0.0
> Ahg479492 jgi|Araly1|479492|fgenesh2_kg.3__2193__AT3G19760.1
Length=1533
Score = 2362 bits (1279), Expect = 0.0
Identities = 1458/1542 (95%), Gaps = 21/1542 (1%)
Strand=Plus/Plus
Query 12 AAGCATTTGGGGGAAATCAATCGAAAACCCTAGGAGAGATAAAAAC-AAAAATCTAGACG 70
|||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 1 AAGCATTTGGGGAAAATCGATTGAAAACCCTAGGAGAGA-GAAAACAAAAAATCTAGACG 59
Query 71 GAGATTTATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGAGCTAT 130
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 GAGACTAATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGACCTAT 119
Query 131 GGATGACGATAAGTTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTCAA 190
||||||||||||| |||| |||||||| || || || || ||||||||||| ||||||||
Sbjct 120 GGATGACGATAAGCTGGTGTTCGAGACGACGGAAGGGATCGAGCCCATCACTAGCTTCAA 179
Query 191 TGATATGGGCATTAAGGAAGATGTGCTTCGCGGTGTCTACGAATATGGATTCGAGAAGCC 250
||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 180 TGATATGGGGATAAAGGAAGATGTGCTTCGCGGTGTTTACGAGTATGGATTCGAGAAGCC 239
Query 251 TTCCGCGATTCAGCAGAGGGCTGTTATGCCGATTCTTCAAGGACGTGATGTTATTGCTCA 310
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 240 TTCCGCGATTCAGCAGAGGGCTGTGATGCCGATTCTTCAAGGACGCGATGTTATTGCTCA 299
Query 311 AGCTCAGTCCGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGA 370
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 300 AGCTCAGTCTGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGCCAAGTTGTTGA 359
Query 371 TACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACA 419
Query 431 AACAGAGAAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCAT 490
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AACAGAGAAGACGATACAAGCTATTGGATTACACGCCAATATTCAGGCACATGCTTGCAT 479
Query 491 CGGTGGGAATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTC 550
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGGTGGGAAGAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTC 539
Query 551 TGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTAT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTAT 599
Query 611 TAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGAT 670
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 600 TAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAAGACCAAAT 659
Query 671 CTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCT 730
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 660 CTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCCTGGTTTCTGCAACCCT 719
Query 731 TCCTCACGAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGT 790
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 720 TCCTCACGAGATTTTGGAGATGACATCTAAGTTTATGACGGAGCCAGTGAAGATACTTGT 779
Query 791 GAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAGGA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 GAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAAGA 839
Query 851 AGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGT 910
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 GGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACACTTACTATCACTCAAGCTGT 899
Query 911 TATCTTCTGCAATACTAAACGAAAGGTGGATTATCTTAGTGAGAAAATGAGAAGTCACAA 970
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 900 TATCTTCTGCAATACAAAACGAAAGGTGGATTATCTAAGTGAGAAAATGAGAAGTAACAA 959
Query 971 CTTCACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAA 1030
||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 960 CTTCACTGTCTCATCAATGCACGGGGACATGCCTCAGAAGGAGAGAGACGAGATCATGAA 1019
Query 1031 TGAGTTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGAT 1090
| |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1020 TCAGTTCCGGTCAGGTGAAAGTCGTGTTTTGATCACAACTGATGTATGGGCACGTGGGAT 1079
Query 1091 TGATGTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTA 1150
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1080 TGATGTGCAGCAAGTTTCTCTTGTCATCAATTATGATCTCCCCAACAACCGTGAGCTGTA 1139
Query 1151 CATCCATCGTATTGGGCGGTCTGGTCGATTCGGGCGTAAGGGTGTTGCAATCAACTTTGT 1210
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 CATCCATCGTATTGGACGGTCTGGTCGATTTGGGCGTAAGGGTGTTGCAATCAACTTTGT 1199
Query 1211 TAAAAGCGACGACATCAAGATTCT-CAGAGACATTGAGCAGTACTACAGTACCCAGATTG 1269
|||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1200 TAAAAGCGACGATATCAAGATCCTTC-GAGACATTGAGCAGTACTACAGTACCCAGATTG 1258
Query 1270 ATGAGATGCCAATGAATGTAGCTGATCTTATCTAAAAGA-G--CTTGTCTGAGATTTTTG 1326
||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 1259 ATGAGATGCCAATGAATGTAGCTGATCTTATCTAAAAGAAGAGCTTGTCTGAGGTTTTT- 1317
Query 1327 TGCTTTCAGCGGGGAAGTGTCTGGATGA-AA-AAGTATTGTTGAGCGCTTCTGTCAAATT 1384
||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1318 TGCTTTCAGCGGG-AAGTGTCTGGATGAGAAGAAGTATTGTTGAGAGCTTCTGTCAAATT 1376
Query 1385 ATTGCACTATCTTAACGGTGTATTTCCTTT-GATGTTTCTGTGGGCTCTTTTGAACAAAC 1443
|||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1377 ATTGCACTATCTTAT-GGTGTGGTTCCTTTTGATGTTTCTGTGGGCTCTTTTGAACAAAC 1435
Query 1444 TTAAA-CTCGCGTGTGGTAAATGTT-TAATGACTTGAGAAGCGATTTAGGTTTAGGGTTT 1501
||||| |||||||||||||||| || ||||||||| |||||||||||||| |||||||||
Sbjct 1436 TTAAAACTCGCGTGTGGTAAAT-TTATAATGACTTAAGAAGCGATTTAGGATTAGGGTTT 1494
Query 1502 GGACCGTT-TGGTTTTTCGTTTCC-TCGTAATTGATTCTGGG 1541
||||| || |||||||| ||||| |||||||||||| ||||
Sbjct 1495 GGACC-TTCTGGTTTTT--TTTCCCTCGTAATTGATTTTGGG 1533
> Ahg478254 jgi|Araly1|478254|fgenesh2_kg.3__955__AT3G19760.1
Length=1184
Score = 1378 bits (746), Expect = 0.0
Identities = 992/1109 (89%), Gaps = 24/1109 (2%)
Strand=Plus/Plus
Query 87 GCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGT-GGAGCTA-TGGATGAC-GATAAG 143
||||||||||||||||||| || | ||||| ||| || | | |||||||| || |||
Sbjct 9 GCGAATCCTGGCCGTGGAGACCGTGGGAGAGGTGGTAGG-G-GAGTGGATGACAGACAAG 66
Query 144 TTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTC-AATGATATGGGCAT 202
||||||||| |||| ||| | || | ||||||||| ||| ||| || |||||||| ||
Sbjct 67 TTGGTCTTCAAGACGACCAAAGGGGTCGAGCCCATCGCGAATTTCGAA-GATATGGGTAT 125
Query 203 TAAGGAAG-ATGTGCTTCGCGGTGTCTACGAATATGGATT-CGAGAAGCCTTCCGCGATT 260
|| | || |||| ||||| ||| | ||||| || || || ||||||||| ||||| |||
Sbjct 126 CAAAG-AGAATGTTCTTCGTGGTTTATACGAGTACGG-TTACGAGAAGCCCTCCGCCATT 183
Query 261 CAGCAGAGGGCTG-TTATGCCGATTCTTCAA-GGACGTGATGTTATTGCTCAAGCTCAGT 318
||||||||||| | | ||||||||||| ||| ||| | ||||| ||||||||||||||||
Sbjct 184 CAGCAGAGGGC-GATCATGCCGATTCTCCAAGGGA-GAGATGTCATTGCTCAAGCTCAGT 241
Query 319 CCGGTACCGGG-AAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGATACTTCT 377
|||||| |||| ||||| ||||||||||||||||| || || ||||||||||| ||||||
Sbjct 242 CCGGTA-CGGGAAAGACCTCTATGATTGCTCTCTCTGTCTGCCAAGTCGTTGACACTTCT 300
Query 378 TCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAG 360
Query 438 AAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCATCGGTGGG 497
| |||||||||||||||||||| ||| | |||| | ||||||||||| ||||| ||||||
Sbjct 361 ATGACGATACAAGCTATTGGATCACACGGCAATGTCCAGGCACATGCATGCATTGGTGGG 420
Query 498 AATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTCTGGGACA 557
|| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 AAGAGCGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTCCATGTTGTGTCCGGGACA 480
Query 558 CCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTT 540
Query 618 CTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGATCTATGAT 677
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 541 CTGATTCTTGATGAATCAGATGAAATGCTAAGCAGAGGATTCAAGGACCAAATCTATGAT 600
Query 678 GTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCTTCCTCAC 737
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 601 GTTTACAGATATCTTCCACCCGATATTCAGGTTTGCTTGGTTTCTGCAACTCTACCTCAC 660
Query 738 GAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGTGAAGCGT 797
|||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||
Sbjct 661 GAGATTTTGGAGATGACAACCAAGTTTATGACGGATCCGGTGAAGATACTTGTGAAGCGT 720
Query 798 GATGAGTTGACTCTTGAAGGAATCAAACAA-TTTTTTGTTGCTGTTGAGAAGGAAGAGTG 856
||||||||| ||||||| ||||| ||| || |||||| || |||||||||| || |||||
Sbjct 721 GATGAGTTGGCTCTTGAGGGAATAAAA-AACTTTTTTATTTCTGTTGAGAAAGAGGAGTG 779
Query 857 GAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGTTATCTT 916
||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 780 GAAGTTTGAGACACTATGTGATCTTTATGACACACTTACCATCACTCAAGCTGTTATCTT 839
Query 917 CTGCAATACTAAACGAAAGGTGGA-TTATCTTAGTGAGAAAATGAGAAGTCA-CAACTTC 974
|||||| || |||||||| ||||| || |||||||||||||||||| || || |||||||
Sbjct 840 CTGCAACACAAAACGAAAAGTGGACTT-TCTTAGTGAGAAAATGAGGAG-CAGCAACTTC 897
Query 975 ACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAATGAG 1034
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 898 ACTGTCTCATCAATGCATGGGGACATGCCTCAGAAGGAGAGAGACGAGATCATGAATCAG 957
Query 1035 TTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGATTGAT 1094
|||||| ||||||| ||||| |||||||| ||||||||||||| ||||| |||||||||
Sbjct 958 TTTCGGACAGGTGAGAGTCGCGTTTTGATCACAACAGATGTATTTGCACGCGGGATTGAT 1017
Query 1095 GTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTACATC 1154
|| || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1018 GTTCATCAAGTTTCTCTTGTCATCAATTATGATCTCCC-AACAACCGTGAGCTGTACATC 1076
Query 1155 CATCGTATTGGGCGGTCTGGTCGATTCGG 1183
||||||||||| ||||||||||| |||||
Sbjct 1077 CATCGTATTGGACGGTCTGGTCGTTTCGG 1105
Score = 121 bits (65), Expect = 2e-26
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1230 ATTCTCAGAGACATTGAGCAGTACTACAGTACCCAGATTGATGAGATGCCAATGAATGTA 1289
|||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1108 ATTCTCCGGGACATTGAGCAGTACTACAGTACTCAGATTGACGAGATGCCAATGAATGTA 1167
Query 1290 GCTGATCTTATCTAAAA 1306
|||||||||||||||||
Sbjct 1168 GCTGATCTTATCTAAAA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5