BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19770.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479493 jgi|Araly1|479493|fgenesh2_kg.3__2194__AT3G19770.1 2977 0.0
Ahg487743 jgi|Araly1|487743|fgenesh2_kg.6__877__AT5G09320.1 915 0.0
> Ahg479493 jgi|Araly1|479493|fgenesh2_kg.3__2194__AT3G19770.1
Length=2023
Score = 2977 bits (1612), Expect = 0.0
Identities = 1864/1984 (94%), Gaps = 23/1984 (1%)
Strand=Plus/Plus
Query 66 ACTC-TTCTCACTGGTCAATCGTCGGAGATAATCGGGTGATCGGCGATGGAGAATACGGA 124
|||| ||||||||||||||| | ||||||||| ||||| ||||||||||||||| |||||
Sbjct 45 ACTCATTCTCACTGGTCAATAGACGGAGATAAACGGGTCATCGGCGATGGAGAACACGGA 104
Query 125 CGTCTTCTTGGGGCTGCATGATTTCCTGGAGCGGATGCGCAAACCCTCCGCCGGCGATTT 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 105 CGTCTTCTTGGGGCTGCATGATTTCCTGGAACGGATGCGCAAACCCTCCGCCGGCGATTT 164
Query 185 CGTCAAATCCATTAAAAGTTTCATTGTTTCATTCTCGAACAATGCACCAGACCCGGAAAA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CGTCAAATCCATTAAAAGTTTCATTGTTTCATTCTCGAACAATGCACCAGACCCGGAAAA 224
Query 245 AGATTGTGCTA-TGGTTCAGGAGTTCTTTTCTAAGATGGAGGCTGCTTTCAGGGCTCATC 303
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AGATTGTGCTACTG-TTCAGGAGTTCTTTTCTAAGATGGAGGCTGCTTTCAGGGCTCATC 283
Query 304 CACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGATAGTGCTGGAGATGGCCTGGAGAAGT 363
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 284 CACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGACAGTGCGGGAGATGGCCTAGAGAAGT 343
Query 364 ATGTTATGACAAAGCTATTTACTCGGGTGTTTGCTTCAAACACTGAGGAGGTTATAGCTG 423
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 344 ATGTTATGACAAAGCTATTTACCCGGGTATTTGCTTCAAACACTGAGGAGGTTATAGCTG 403
Query 424 ATGAGAAGCTATTTCAGAAGATGTCATTGGTTCAACAATTCATTTCTCCCGAGAATTTGG 483
||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 404 ATGAGAAACTCTTTCAGAAGATGTCACTGGTTCAACAATTCATTTCTCCTGAGAATTTGG 463
Query 484 ATATACAACCAACTTTTCAAAATGAATCGTCATGGCTGCTAGCTCAAAAAGAGCTCCAGA 543
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 464 ATATACAACCAACTTTTCAAAATGAATCATCATGGCTGCTAGCTCAAAAAGAGCTCCAGA 523
Query 544 AGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATCCTTAACTGTTGCAAAG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATCCTTAACTGTTGCAAAG 583
Query 604 TGATTAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAGAATGCACCTGGAGCAG 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TGATAAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAGAATGCACCTGGAGCAG 643
Query 664 ACGAATTTCTTCCTGTTTTGATATATGTAACAATAAAGGCTAACCCTCCACAACTTCACT 723
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 644 ACGAATTTCTTCCTGTTTTGATATATGTTACAATAAAGGCTAACCCTCCACAACTTCACT 703
Query 724 CAAACTTGTTGTATATACAAAGGTATAGGCGTGAATCTAAACTTGTTGGTGAAGCTGCGT 783
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 704 CAAACTTGTTGTATATACAAAGATATAGGCGTGAGTCTAAACTTGTTGGTGAAGCTGCGT 763
Query 784 ACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCAAATATTGATGCAAAATCTA 843
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 764 ACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCTAATATTGATGCAAAATCTC 823
Query 844 TTTCACTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTGCACGGGCACGAATTTCTG 903
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 824 TTTCATTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTGCACGAGCACGAATTTCTG 883
Query 904 GTTTGGACAGCCAGACTTATCAAACTGGTCATGGCTCTGCACCACCCCCTCGTGATGAGT 963
|||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 884 GTTTGGGCAGCCAGTCTTATCAAACTGGTCATGGCTCTGCATCACCCCCTCGCGATGAGT 943
Query 964 CCACTCTTCAGAAAACTCAAAGTCTGAATCCCAAGAGGGAAAACACTCTTTTCCAATCAA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CCACTCTTCAGAAAACTCAAAGTCTGAATCCCAAGAGGGAAAACACTCTTTTCCAATCAA 1003
Query 1024 AATCGTCTGATAGTCTTTCTGGGACCAACGAATTACTGAATATAAACAGTGAAACACCAA 1083
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1004 AATCGTCTGATAGTCTTTCTGGGACCAACGAAATACTGAATATAAACAGTGAAACACCAA 1063
Query 1084 TGAAGAAAGCTGAATCCATTTCAGATTTGGAAAATAAGGGTGCGACGCTTCTGAAGGATA 1143
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1064 TGAAGAAAGCTGAATCCATTTCAGATTTGGAAAATAAGGGTGCAACGCTTCTGAAGGATA 1123
Query 1144 CCGAGCCAAGCAAAGTCTTTCAAGAATATCCTTACATATTTGCCAGTGCTGGTGATTTGA 1203
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1124 CCGAGCCAAGCAAAGTCTTTCAAGAATATCCTTACTTATTTGCCAGTGCTGGTGATCTGA 1183
Query 1204 GGATAGGAGATGTTGAAGGCTTGTTAAATAGTTATAAACAGCTCGTTTTCAAATATGTGT 1263
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1184 GGATAGGAGATGTTGAGGGCTTGTTAAATAATTATAAACAGCTCGTTTTCAAATATGTGT 1243
Query 1264 GCCTTACCAAAGGATTGGGTGATGGAACATCTTTAGCTCCATCCAGTTCACCCTTGCAAG 1323
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1244 GCCTGACCAAAGGATTGGGTGATGCAACATCTTTAGCTCCATCCAGTTCACCCTTGCAAG 1303
Query 1324 CGTCGTCCGGTTTTAATACGTCTAAGGAATCTGAGGATCATAGAAGATCGTCTTCAGATG 1383
||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1304 CGTTGTCCGGTTTTGATACGTCTAAGGAATCTGAGGATCATACAACATCGTCTTCAGATG 1363
Query 1384 TACAAATGACAAAGGAAACTGACAGGAGTGTTGATGATTTGATCCGAGCTCTACATGGTG 1443
| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1364 TGCAAATGACAAGGGAAACTGACAGCAGTGTTGATGATTTGATCCGAGCTCTACAAGGTG 1423
Query 1444 AAGGGGAAGATGTTAACAATCTGTCAGATGTAAAACATGAAGAATATGGCGCAATGTTGG 1503
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1424 AAGGGGAAGATGTTAATAATTTGTCAGATGTAAAACATGAAGAATATGGCGCAATGTTGG 1483
Query 1504 TAGAGGGAAAGGATGAAGAACGTGATTCCAAGGTGCAAGGAGAAGTAGATGCCAAAGATA 1563
||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 1484 TAGAGCGAAAGGATGAAGAACGTGATCCCAAGGTGCTAGGAGAAGCAGATGCCAAAGATA 1543
Query 1564 TTGAATTGATGAAGCAAATTCCTAAGAGAGAAGGTGACAATTCTAGTTCCCGACCTGCAG 1623
||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1544 CTGATTTGATTAAGCAAATTCCTAAGAGAGAAAGTGACAATTCTAGTTCCCGACCTGCAG 1603
Query 1624 AAGATGAAGATGTTGGTTCCAAACAGCCAGTTACGGAAGCTTCTGAGTGAGCCA-AATGA 1682
||||||||||||||||||||||||| |||||| ||||||||| ||||||||| | |||||
Sbjct 1604 AAGATGAAGATGTTGGTTCCAAACACCCAGTTGCGGAAGCTTTTGAGTGAGC-AGAATGA 1662
Query 1683 CCCATCTTGGTGATGAGAGTCTCTTGTATCGGATCAATTATTCATTTAATGGGGGAAGCA 1742
| | || |||||||||||||||||| || |||||| ||||| || | ||||||||||
Sbjct 1663 CTCGTCAAGGTGATGAGAGTCTCTTGAATGGGATCAGTTATTTGTTGAGGGGGGGAAGCA 1722
Query 1743 AAGGTCA-AGTCATAGTTAAGATGTCATCTATTCGTTTCTTGGAGTTATGAGTTTTGAAG 1801
|||||| || ||||| ||| |||||||| ||||||||| || || | || ||||||| |
Sbjct 1723 GAGGTCAGAG-CATAGGTAAAATGTCATCCATTCGTTTCCTGCAGCTGTGTGTTTTGAGG 1781
Query 1802 ATGACTGGAGAGCCGTATGAGACGGAAG-CTATCTGCATCTGTATTCCCTTGGAAAAGAG 1860
|||||||||||| ||||||| | ||| ||||||| |||| || || ||||| ||| ||
Sbjct 1782 ATGACTGGAGAGTTGTATGAGGTG-AAGGCTATCTGTATCTTTAGTCTCTTGGGAAACAG 1840
Query 1861 GGGCAGTCAAATGGTAAAT-TACTTTCTTCAATTGTGTTT--Cttttttt--GC--TC-- 1911
| ||||||||||||||| | ||||||||| | |||||||| |||||||| || ||
Sbjct 1841 GAGCAGTCAAATGGTAACTCTACTTTCTTTAGTTGTGTTTTTCTTTTTTTTTGCAGTCCA 1900
Query 1912 -T-TT-GTTTCTC-AGTGATATGATTTTGGAGGGGCTCGTCAACATTTGTCAATCCATAT 1967
| || ||||||| | |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1901 CTCTTTGTTTCTCTA-TGATATGATTTTGGAGGGGCTCCTCAACATTTATCAATCCATAT 1959
Query 1968 GTAACTCTTACATCTGCTATTGCGTATATACAATAAGGATATAATCAGAATAATATTTGC 2027
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1960 GTAACTCTTACATCTGCTATTGCGTATATACTATAAGGATATATTCAGAATAATATTTGC 2019
Query 2028 CAAG 2031
||||
Sbjct 2020 CAAG 2023
> Ahg487743 jgi|Araly1|487743|fgenesh2_kg.6__877__AT5G09320.1
Length=2568
Score = 915 bits (495), Expect = 0.0
Identities = 730/843 (87%), Gaps = 18/843 (2%)
Strand=Plus/Plus
Query 111 ATGGAGAATACGGACGTCTTCTTGGGGCTGCATGATTTCCTGGAGCGGATGCGCAAACCC 170
|||||||| ||||||||| ||| ||| |||||| |||| || || | | |||||
Sbjct 1 ATGGAGAACACGGACGTCGTCTCGGGTCTGCATAATTT-CTTGA---G-T----AAACCA 51
Query 171 TCCGCCGGCGATTTCGTCAAATCCATTAAAAGTTTCATTGTTTC-ATTCTCGAACAATGC 229
|||||| |||||| ||||||| |||||||||||||||||||| | ||| ||||| |||
Sbjct 52 TCCGCCAAAGATTTCATCAAATCAATTAAAAGTTTCATTGTTTCGA-TCTTGAACACTGC 110
Query 230 ACCAGACCCGGAAAAAGATTGTGCTATG--GTTCAGGAGTTCTTTTCTAAGATGGAGGCT 287
||||||||| ||||||||||||| ||| |||||||| |||||||| ||||||||| ||
Sbjct 111 ACCAGACCCTGAAAAAGATTGTG--ATGCAGTTCAGGAATTCTTTTCCAAGATGGAGTCT 168
Query 288 GCTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGATAGTGCTGGA 347
||||||||||||||||||||||||||||||||||| | || || || | | ||| |||
Sbjct 169 GCTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCCGCTGATGAGTTACACAATGCAGGA 228
Query 348 GATGGCCTGGAGAAGTATGTTATGACAAAGCTATTTACTCGGGTGTTTGCTTCAAACACT 407
||||| |||||||||||||| ||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 229 GATGGACTGGAGAAGTATGTCATGACAAAGTTATTTCCCCGGGTTTTTGCATCAAACACC 288
Query 408 GAGGAGGTTATAGCTGATGAGAAGCTATTTCAGAAGATGTCATTGGTTCAACAATTCATT 467
||||| |||||| | |||||||| || ||||| ||||||||||| |||||| ||||||
Sbjct 289 GAGGATGTTATATCGGATGAGAAACTCTTTCACAAGATGTCATTATTTCAACTATTCATA 348
Query 468 TCTCCCGAGAATTTGGATATACAACCAACTTTTCAAAATGAATCGTCATGGCTGCTAGCT 527
||||| || || |||||||||||||||||||||||||| || | |||||||| ||||||
Sbjct 349 TCTCCTGAAAACTTGGATATACAACCAACTTTTCAAAACCAAACATCATGGCTCCTAGCT 408
Query 528 CAAAAAGAGCTCCAGAAGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATC 587
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 409 CAAAAAGAGCTCCAGAAGATAAATATGTACAATGCTCCTCGTGATAAGCTTATGTGTATC 468
Query 588 CTTAACTGTTGCAAAGTGATTAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAG 647
|||| || |||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 469 CTTAGGTGCTGCAAAGTCATTAACAACTTACTTCTAAATGCTTCAATTGCTTCAAACGAG 528
Query 648 AATGCACCTGGAGCAGACGAATTTCTTCCTGTTTTGATATATGTAACAATAAAGGCTAAC 707
|||||||||||||| ||| |||||||||||||| | |||||||| || || |||||||||
Sbjct 529 AATGCACCTGGAGCCGACCAATTTCTTCCTGTTCTCATATATGTTACCATTAAGGCTAAC 588
Query 708 CCTCCACAACTTCACTCAAACTTGTTGTATATACAAAGGTATAGGCGTGAATCTAAACTT 767
||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 589 CCTCCACAACTTCACTCAAACTTATTGTATATACAAAGATATAGGCGTCAATCTAAACTT 648
Query 768 GTTGGTGAAGCTGCGTACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCAAAT 827
|||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 649 GTTGGTGAAGCTGCCTACTTGTTCACAAATATACTCTCTGCAGAGTCATTCATCTCAAAT 708
Query 828 ATTGATGCAAAATCTATTTCACTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTGCA 887
||||||||| |||| | ||| ||||||||||||| |||||||| || ||| ||||||||
Sbjct 709 ATTGATGCAGAATCCCTCTCAATGGATGAAGCTGACTTTGAAAATAAAATGAAATCTGCA 768
Query 888 CGGGCACGAATTTCTGGTTT-GGACAGCCAGACTTATCAAACTGGTCATGGCTCTGCAC- 945
|||||||| |||||||| | ||| |||||| ||||||||| || ||| | | ||||||
Sbjct 769 CGGGCACGTCTTTCTGGTCTCGGA-AGCCAGTCTTATCAAAATGATCACGACGCTGCACT 827
Query 946 CAC 948
|||
Sbjct 828 CAC 830
Score = 300 bits (162), Expect = 3e-80
Identities = 308/374 (82%), Gaps = 28/374 (7%)
Strand=Plus/Plus
Query 1073 TGAAACACCAATGAAGAAAGCTGAATCCATTTCAGATTTGGAAAATAA-GG-G-TGCGAC 1129
|||||||||||| |||||| ||||||||||| | |||||||||||||| || | | | ||
Sbjct 900 TGAAACACCAATAAAGAAATCTGAATCCATTACCGATTTGGAAAATAAGGGCGCTTCTAC 959
Query 1130 GC-TTCTGAAGGAT---ACCGAGCCAAGCAAAGTCTTTCAAGAATATCCTTACATATTTG 1185
|| ||| ||||||| | ||| ||| |||| |||||||||||||||||||||| ||||
Sbjct 960 GCTTTC-GAAGGATAGAAGTGAGGCAACCAAAATCTTTCAAGAATATCCTTACATGTTTG 1018
Query 1186 CCAGTGCTGGTGATTTGAGGATAGGAGATGTTGAAGGCTTGTTAAATAGTTATAAACAGC 1245
|||||| ||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1019 CCAGTGTTGGTGATTTAAAGATAGGATATGTTGAAGACTTGCTAAATAGTTATAAACAGC 1078
Query 1246 TCGTTTTCAAATATGTGTGCCTTACCAAAGGATTGGGTGATGGAACATCTTTAGCTCCAT 1305
|||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||
Sbjct 1079 TCGTTTTCAAATATGTTTGCCTTTCCAAAGGCTTGGGTGATGCAAAATCTTTAGCTCCAT 1138
Query 1306 CCAGTTCACCCTTGCAAGCGTCGTCCGGTTTTAATACGTCTAAGGAATCTGAGGATCATA 1365
| | |||||| || |||||||| | || || ||| | | | | ||||||
Sbjct 1139 CTATTTCACCATTACAAGCGTC-TA-------AAGAC-TCT--G-A--C--A--ATCATA 1180
Query 1366 GAAGATCGTCTTCAGATGTACAAATGACAAAG-GAAACTGACAGGAGTGTTGATGATTTG 1424
|| || |||||||||||| |||| || |||| ||||||||||| || ||||||||||||
Sbjct 1181 CAACATTGTCTTCAGATGTTCAAACGA-AAAGCGAAACTGACAGTAGCGTTGATGATTTG 1239
Query 1425 ATCCGAGCTCTACA 1438
|||| ||||||||
Sbjct 1240 TTCCGGGCTCTACA 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5