BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19780.1
Length=3418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479495 jgi|Araly1|479495|fgenesh2_kg.3__2196__AT3G19780.1 3537 0.0
> Ahg479495 jgi|Araly1|479495|fgenesh2_kg.3__2196__AT3G19780.1
Length=3162
Score = 3537 bits (1915), Expect = 0.0
Identities = 2157/2273 (95%), Gaps = 19/2273 (1%)
Strand=Plus/Plus
Query 47 GAGAGCGAGCTGTTTTCCGATGAAAACGCCGACGCTCCTCC-TC-CTTCCATTCTTGGTC 104
|||||||||| ||||||||||||| ||||| |||||||||| || ||||| || | |
Sbjct 1 GAGAGCGAGCGGTTTTCCGATGAAGACGCCCACGCTCCTCCTTCTCTTCC--TC-T--CC 55
Query 105 TTCGTATCCATAATTCTTCC--C-TCAAGCT-GCCATGGCGAATGGGAAATCCTCACGGA 160
||| ||||| | |||||||| | ||||| | | || ||||||||||| |||||||||||
Sbjct 56 TTCTTATCCGTTATTCTTCCATCGTCAAG-TGGGCAAGGCGAATGGGAGATCCTCACGGA 114
Query 161 GCAAAACTTCTCTTCTCAGATCCGTCTCCACCCTCACGTCCTCCTCTTTGTCACCACTCC 220
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 115 GCAAAACTTCTCTTCTCAGATCCGTCTCCACCCTCATGTCCTCCTCTTTGTCACCACTCC 174
Query 221 ATGGTGTGGTGAGTCCAGATCTCTTAAGTATGAAATTACTCAGATGGTTCAGAGAAGAGA 280
||||||||||||||||||||| |||||| |||||||| ||||||||||||| || || ||
Sbjct 175 ATGGTGTGGTGAGTCCAGATCGCTTAAGCATGAAATTGCTCAGATGGTTCAAAGTAGGGA 234
Query 281 AGAGTTTGGCTTGTTGAAGTTAATGGTTGTATACAGAAACTCAGAAAAGGTGTTAGCACA 340
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GGAATTTGGCTTGTTGAAGTTAATGGTTGTATACAGAAACTCAGAAAAGGTGTTAGCACA 294
Query 341 AGCCATTGGTGCTGCTGTCAATGGGATAACAATTTTGTACTATCACAATAGTGTGCCTTA 400
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 295 AGCCATTGGTGCTGC---CAACGGGATAACAATTTTGTACTATCACAAAAGTGTGCCTTA 351
Query 401 CAACTATCTAGGGAAACTCCGAGCCTCGAATATATTGTCATCTATTCATCCTTATCTGAC 460
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 352 CAACTATCTAGGGAAACTCCGAGCCTCGAATATATTGTCCTCTATACATCCTTATCTGAC 411
Query 461 ATCTACGCCTGAAGAACTCCCTCTCAAACATTTGAAGTCTCCAAAGAGTTTGAAAGATTT 520
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATCTACTCCTGAAGAACTCCCTCTCAAACATTTGAAGTCTCCAAAGAGTTTGAAAGATTT 471
Query 521 CCTTCAATCATCTGATAAGGCTTTACTTCTGTTCGAATTTTGCGGATGGACAACTACACT 580
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 472 CCTTCAATCATCTGACAAGGCTTTACTTCTGTTCGAATTTTGCGGATGGACTACTACGCT 531
Query 581 GATGTCTGAGCTGAAGAAAAATGTTACTCAAGATAACCTTTGGCAGGAATGGAACAATAT 640
| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 532 GCTATCTGAGCTGAAGAAAAATGTTACTGAAGATAACCTTTGGCAGGAATGGAACAATAT 591
Query 641 GTGTGGACTCCAAAGTGGATTTGGTAAAGTTCCCTGGCTTGAGGATTTTAGCTATGCGAA 700
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 592 GTGTGGACTCCAAAGTGGATTTGGTAAAGTTCCTTGGCTTGAGGATTTTAGCTATGCCAA 651
Query 701 TGATACTGCTGCTTTGCAGGAACATGGCAGGGTAAATCTGGGTCTTGGACAGACATGTAA 760
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 652 TGATACTGCTGCTTTGCAGGAACATGGCAGGGTAAATCTGGGTTTTGGACAGACATGTAA 711
Query 761 CCATGAAGAGTTCAAGCGATTTAGTTCATTCCTCTTGAAATTGATTGCCACCACAAAAGA 820
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 CCATGAAGAGTTCAAGCAATTTAGTTCATTCCTCTCGAAATTGATTGCCACCACAAAAGA 771
Query 821 GTTTTCTCTGCCTCCGGAAAGGCAAAAATTTGGTCTGATCACAGAAGAATCATTGGCTTC 880
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTTTTCTCTGCCTCCTGAAAGGCAAAAATTTGGTCTGATCACAGAAGAATCATTGGCTTC 831
Query 881 ATCATTTAATTTTGGAAAATCTGATTCGTGGGCAGCGGTCCTTCAGCTGGCAGGATGTCC 940
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 832 ATCATTTAATATTGGAAAATCTGATTCGTGGGCAGCGGTCCTTCAGCTAGCAGGATGTCT 891
Query 941 ACATTGTTCTAAGATTTTCAAGGCCGGGGATGACATTCAGAGATTTTTAAAGATGGAAAA 1000
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 892 ACATTGTTCAAAGATTTTCAAGGCCGGGGACGACATTCAGAGATTTTTAAAGATGGAGAA 951
Query 1001 TCCGATAGTTACAGAGCTGGAGGACGACTGGCAGGACCATGAGTCATCTCTACCTGCAAG 1060
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 952 TCCGATAGTCACAGAGCTGGAGGACGACTGGCAGGACCATGAGTCATCTTTACCTGCAAG 1011
Query 1061 TAAACCGTCAGTTATTCTTTTTGTGGATAGATCAAGTGGGTCCTTGGAGGAGATGAGAAG 1120
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1012 TAAACCCTCAGTTATTCTTTTTGTGGATAGATCAAGTGGGTCCTTGGAAGAGAGGAGAAG 1071
Query 1121 GAGTATAAAAGCACTTGATACCTTCAGACAGGTAGCTGCACAGCATAAATTGTCTGACAT 1180
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1072 GAGTATGAAAGCACTTGATACTTTCAGAGAGGTAGCTGCACAGCATAAATTGTCTGACAT 1131
Query 1181 AAAA-AAGTGGGAGAATGATATTATGTATGAGAACCCCGTTAGTCAAACTGATCAAGAAT 1239
|||| || |||||||||||||||| ||||||||| ||||||| || ||||| || |||
Sbjct 1132 AAAACAA-TGGGAGAATGATATTAAGTATGAGAAATCCGTTAGCCAGGCTGATAAAAAAT 1190
Query 1240 CGGGGTCCGTGCCACTTCCGAAAACTGTCCAAAAGTTTAAGAAAATTAAGTTCGAGAATA 1299
||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1191 CGGGGTCTGTGTCACTTCCAAAAACTGTCCAAAAGTTTAAGAAAATTAAGTTAGAGAATA 1250
Query 1300 AGGTTTCTTTTATGATTATGGATGGGGGTAAACATGTAGCCCTAGATACTATAGCGCCAG 1359
|||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1251 AGGTCTCTTTTATGATTTTGGATGGGGATAAACATGTAGCCCTAGATACTGTAGCGCCAG 1310
Query 1360 GTATGGAAGGCAGTTCCCTGCAGGAGATACTGAAAAATCTTCTTCACAGAAGAAAAGAAA 1419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1311 GTATGGAAGGCAGTTCCCTGCAGGAGATACTGACAAATCTTCTTCACAGAAGAAAAGAAA 1370
Query 1420 GTAAATTGAGCTCAATTGCTAAGGATGTTGGTTTCCGTCTGTTATCTGATGATGTGCACA 1479
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTAAATTGAGCTCGCTTGCTAAGGATGTTGGTTTCCGTCTGTTATCTGATGATGTGCACA 1430
Query 1480 TAAAAGTTCTGGATGCGTTACCGTCACAAGCAGAAGTTGTGTCTGGTCAAGATACAACTT 1539
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1431 TAAAAGTGCTGGATGCGTTACCGTCACAAACAGAAGTTGTGTCTAGTCAAGATACAACTT 1490
Query 1540 CATCTTCTGCAGAAGGTTCCAGTGAAATTTCACTTCACCCTACAGAAGCAGATGTGCAGA 1599
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 1491 CATCTTCTGCAGAAGGTTCCAGTGAAATTTCTCTTCACCCTAAAGATGCAGATGTGCAGA 1550
Query 1600 ACAGAGTCAGTATGAGTTCTGAAGCAAAAGATGAAATGAAATCCTCTGAAATTGAATCCT 1659
|||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1551 ACAGAGTCGGTATGAGTTCTGAAGAAAAAGATGAAATGAAATCCTCTGAAACTGAATCCT 1610
Query 1660 CCTCCCCTAGTGATGAAGAGCAGGCTACTACAAACAGGAGTGAACAATTAGTAGTGGCAG 1719
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1611 CCTCCCCTAGTGATGAAGAGCAGGTTACTACAAACAGGAGTGAACAATTAGTAATGGCAG 1670
Query 1720 AAACCGATAAGACTGAGGTTTATTTGAAAGACAATGTTAATGGAGAGATCAAGGTCTCGT 1779
||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||
Sbjct 1671 AAACCGATAAGACTGAGGTTTATTTGAAAAAAAATATTAATGGAGAGATCAAGGTATCGT 1730
Query 1780 TGCACTCAGAACCGAAGGAAGATCTAGTGCATAAATTCACGGGTTCATTTTTCTTCTCTG 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 TGCACTCAGAACCGAAGGAAGATCTAGTGCATAAATTCACGGGTTCATTTTTCTTCTCTG 1790
Query 1840 ATGCAAATTATGTTTTACTTAGGGCCCTTACTGGTGATGTAAAGATTCCATCAGCAGTAA 1899
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1791 ATGCAAATTATGTATTACTTAGGGCTCTTACTGGTGATGTAAAGATTCCATCAGCAGTAA 1850
Query 1900 TTATTGACCCTGCTTTACAACAGCACTATGTCCTTCAAGATAAGTTCAGCTATTCGTCAC 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTATTGACCCTGCTTTACAACAGCACTATGTCCTTCAAGATAAGTTCAGCTATTCGTCAC 1910
Query 1960 TGGTCGACTTTCTTGATGGATATCTCAATGGAAGTCTATCTCCTTATGCACAGTCTGAAT 2019
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1911 TGGTCGACTTTCTTGATGGATATCTCAATGGAAGTCTATCTCCTTATACACAGTCTGAAT 1970
Query 2020 CTAGCATTCAGACGCCTAAAAGAGCTGCAGTTCCACCTTTTGTTAATCTGGATTTTCACG 2079
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1971 CTAGCATTCAGACGCCTAAAAAAGCTACAGTTCCACCTTTTGTTAATCTGGATTTTCACG 2030
Query 2080 AGGTGGATTCTATTCCCCGTGTCACAGTCAGTACCTTCTCCCACATGGTTCATGCATGGG 2139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2031 AGGTGGATTCTATTCCCCGTGTCACAGTCAGTACCTTCTCCCATATGGTTCATGCATGGG 2090
Query 2140 ATCAATCCAGTGCAGAGAAGGCTCCTTGTCCTCTGTGCCAGGACGTTTTGGTCTTTTTTA 2199
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2091 ATCAATCCAGTGCAGAGAAGGTTCCTTGTCCTCTGTGCCAGGACGTTTTGGTCCTTTTTA 2150
Query 2200 GTAATA-CTTGGTGTGGGTTTTGTCAGAGGATGGAGCTAGTTCTGCATGAAGTTTACCGA 2258
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2151 GTAATAACT-GGTGTGGGTTTTGTCAGAGGATGGAGCTAGTTCTGCATGAAGTGTACCGA 2209
Query 2259 TCATTAAAGGAATATAAAGCGATTATACAAGGAGGATCCAGGAACAATCAAAG 2311
||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2210 TCACTAAAAGAATATAAAGCGATTATACAAGGAGGATCTACGAACAATCAAAG 2262
Score = 1199 bits (649), Expect = 0.0
Identities = 747/793 (94%), Gaps = 11/793 (1%)
Strand=Plus/Plus
Query 2455 CAGCCGAGAGAAACAAAGTCACTCCATATGAAGGGGAGTCATCTGTAACTGACATAACAG 2514
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2271 CAGCCGAGAGAAACAAAGTCACTCCATATGAAGGGGAGACATCTGTAACTGACATAACAG 2330
Query 2515 AGTTTCTAGCTCGCCATGCGAATAACTCTCGCGAGTTTTTCAGACTCCTTCCTACTCTGT 2574
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 2331 AGTTTCTAGCTCGCCATGCGAATAAATCTCGTGAGTTTTTCAGACTCCTTCCTTCTCTGT 2390
Query 2575 CTAGAAATGGAAGAAGAAACTCAAACAAGGT-GGATCAGTCTTCTTCATCTGCGGTA-AA 2632
|||||||||||||||||||||||||||| || |||||| ||||||||||||||| |
Sbjct 2391 CTAGAAATGGAAGAAGAAACTCAAACAA-GTCGGATCA---ATCTTCATCTGCGGTAGAC 2446
Query 2633 TAATAAAGTGACAGATGGTGATAAACTTGTTGAGGTCGTTTTAAGGAACAGAGAGCCCGC 2692
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2447 T-ATAAAGTGACAGATGGTGATAAACTTGTTGAGGTCGTTTTAAAGAACAGAGAGCCCGC 2505
Query 2693 TGAAAGAGAGGTAAACCACGACCAGGTCAATTCCCAATCGCCTCCAATACACTCGCTCAC 2752
|||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 2506 TGAAAGAGAGGTAAACCATGACCAGGTCGATTCCGAATCGCCTCCAACACACTCGCTCAC 2565
Query 2753 AAACGCTCCCCAAGTGAAAACTGGCACAGTCCTGGTCGCTACAGAAAAGCTAGCTGCCTC 2812
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2566 AACCGCTCCCCAAGTGAAAACCGGCACAATCCTGGTCGCTACAGAAAAGCTAGCTGCCTC 2625
Query 2813 CCTAA-CATTTGCCAAATCAAAGATTCTGATCATAAAAGCAGGCCCCGAGA-TCGGTTTC 2870
|| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2626 CC-AAGCATTTGCCAAATCAAAGATTCTGATCATAAAAGCAGGCCCCGA-ATTCGGTTTC 2683
Query 2871 CTGGGCCTAATCTTTAACAAACGGATAAGGTGGAAATCATTCCCTGACCTCGGTGAAACA 2930
||||| |||||||| |||||| |||||||||||||||| ||||||||||| || ||||||
Sbjct 2684 CTGGGTCTAATCTTCAACAAAAGGATAAGGTGGAAATCGTTCCCTGACCTAGGGGAAACA 2743
Query 2931 GCCGAGCTCTTGAAAGAGACTCCTCTATCGTTCGGAGGTCCTGTAGTGGATCCAGGAATA 2990
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 2744 GCCGAGCTCTTGAAAGAGACTCCTCTATTGTTCGGAGGTCCCGTCGTGGATCCAGGAATA 2803
Query 2991 CCACTATTAGCTCTGACCCGAGAGCGAGACTCTTCCACAAACCATGATCACCCGGAAATC 3050
||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 2804 CCACTTTTAGCTCTGACCCGAGAGAAAGACTCATCCACGGACCATGATCACCCGGAAATC 2863
Query 3051 TCACCAGGCGTGTATTTCCTAGATCATCAATCTGTGGCCCGTCGAATCCAAGAGTTGAAA 3110
||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2864 TCACCAGGCGTTTATTTCTTAGATCATCAATCCGTGGCCCGTCGAATCCAAGAGTTGAAA 2923
Query 3111 TCTAGAGAGCTAAATCCAAGTGAGTACTGGTTTTTCTTGGGATACTCAAGCTGGAGTTAT 3170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2924 TCTAGAGAGCTAAATCCAAGTGAGTACTGGTTTTTCTTGGGATACTCAAGCTGGAGTTAT 2983
Query 3171 GAGCAGTTGTTTGATGAGATCGGTCTTGGAGTGTGGGATGTTGATAACAGTGACATTGAC 3230
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2984 GAGCAGTTGTTTGATGAGATAGGTCTTGGAGTATGGGATGTTGATAACAGTGACATTGAC 3043
Query 3231 TTTGCTTGGCCTT 3243
||||| |||||||
Sbjct 3044 TTTGCCTGGCCTT 3056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129053230043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5