BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19790.1
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929879 jgi|Araly1|929879|scaffold_302336.1 449 1e-125
> Ahg929879 jgi|Araly1|929879|scaffold_302336.1
Length=532
Score = 449 bits (243), Expect = 1e-125
Identities = 434/520 (83%), Gaps = 38/520 (7%)
Strand=Plus/Plus
Query 77 AATATGGTTATTTCTCAAGAGGAAGCTGACAATGATCATGCAAGCGGATCGAAAGGATCA 136
||||||| || ||| ||| ||||| |||||||||| ||||||||||||| |||||||||
Sbjct 18 AATATGGATAATTCGAAAGTGGAAGTTGACAATGATAATGCAAGCGGATCCAAAGGATCA 77
Query 137 AGCGTTGGGGAAAACAGTTTGGATTCT-ATAGAGTCTGAAGAGCATG-ATGATGATAT-G 193
||||||||||||||||||||||||||| | ||||| ||| || ||| ||||||| |
Sbjct 78 AGCGTTGGGGAAAACAGTTTGGATTCTGA-AGAGTATGATGA-TATGTCTGATGAT-TCA 134
Query 194 TCTGATG-CGAG-CGGATCGGAAGAA---T-CAAGCGAT-GAAGAAAACCTTGTGGATTC 246
| || | ||| | ||| ||| || | | |||||| ||| ||| |||| ||||||
Sbjct 135 ACAGAGGAGGAGTCTGAT--GAA-AATTCTGCGAGCGATGGAA-AAATCCTTATGGATTA 190
Query 247 TCTAATGTCTGAAATGATTAATGAGTGGTATGATGAGATGTATGATGATTTAACAGACGG 306
||| |||||||||||||||| ||| |||| | ||| ||||| ||| |||||| |
Sbjct 191 TCTTATGTCTGAAATGATTACTGA----TATG-T---ATG-ATGAT--TTT-ACAGAC-G 237
Query 307 A-CTCGAT-GATATTCTTGCTGCTAGAATCCCTTCACTTAGCGCTCTACGAACCAGCAAT 364
| || | | ||||||||||| ||||| ||||||||||||||||| |||| |||| |||||
Sbjct 238 ACCT-GTTCGATATTCTTGCAGCTAGCATCCCTTCACTTAGCGCACTACAAACCTGCAAT 296
Query 365 AAGCAACCCTCAGATTCCAACAAGACTAGTATTGTGTTTGATTCAATGAAGG-CACTCCA 423
||||| |||||||| | |||||||||||| ||||||||| ||||||||| | ||| |
Sbjct 297 AAGCAGCCCTCAGA-T--GACAAGACTAGTACGGTGTTTGATACAATGAAGGTC-CTCAA 352
Query 424 TGATCTACCTGGTGTTAGGATGTGGTCGCCTTTATACCGTGCATCGTTGACTCATTTTCA 483
| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 353 TAATCTAACTGGTGTGAGGATGTGGTCGCCTTTATACCTTGCATCGTTGACTCATATTCA 412
Query 484 GGCTGATGTTACTCATAGAGAGGCCTTCTTGGCATTTTCTGATCCTGAGGATAAGATTTG 543
|||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 413 AGCTGATGTAACTCACAGAGAGGCATTCTTAGCATTTTCTGATCCCGAGGATAAGATTTG 472
Query 544 CTACTTAGAGAACAAGACTGGCAAAAAGAGAGATGAATGA 583
|||||||||| |||||||||||||||||||||||||||||
Sbjct 473 CTACTTAGAGCACAAGACTGGCAAAAAGAGAGATGAATGA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28477818999
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5