BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19800.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479497 jgi|Araly1|479497|fgenesh2_kg.3__2198__AT3G19800.1 1138 0.0
> Ahg479497 jgi|Araly1|479497|fgenesh2_kg.3__2198__AT3G19800.1
Length=726
Score = 1138 bits (616), Expect = 0.0
Identities = 698/736 (95%), Gaps = 11/736 (1%)
Strand=Plus/Plus
Query 28 GAATCATCATCCATGGATGTACGTTGTTTGATCTCTCCAAATCTTTTGAACTCGAAGATT 87
|||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1 GAATCATCATCCATGGCTGTACGTTGTTTGTTCTCTCCAAATCTCTTGAACTCGAAGAAC 60
Query 88 AAAGTTTCCGGCAATACTCATCACCTTCCCTTTTCTTCCCTCTCCAAGAAACACCAAGCT 147
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTTTCCGGCAATAATCATCACCTTCCCTTTTCTTCCCTCTCCAAGAAACACCAAGCG 120
Query 148 TCTTCCCCGATACAGGCAGCCATTAATGGAGGAGGGAGCTCAAAAACAGTGAAGCGTCTG 207
|||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTT---C----C--GCAGCCATTAATGGAGGAGGGAGCTCAAAAACAGTGAAGCGTCTG 171
Query 208 ATCACTTTATCTCCTAGTGAAGGCAAATGGAATGGAAATTGGAAGACTCAGTACGATGTC 267
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 172 ATCACTTTATCTCCTAGTGAAGGAAAATGGAATGGAAACTGGAACACTCAGTACGATGTC 231
Query 268 TCTCTGCGTGATCTTCAACTCCAAGACCTTGTTGAAGATGGCCCTCCCAATTCCCGTGTC 327
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 232 TCTCTGCGTGATCTTCACCTTCAAGATCTTGTTGAAGATGGCCCTCCCAATTCCCGTGTC 291
Query 328 TCTGTCGACCTCTCTGTCCAAAGGCACGCGAGCATGGGCCTCTCAGTAGATGGAAGAATC 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCTGTCGACCTCTCTGTCCAAAGGCACGCGAGCATGGGCCTCTCAGTAGATGGAAGAATC 351
Query 388 ATGACTTCTATCGCAAGAAAGTGCAGCATTTGCTCTTCTCTTTATCCTCGACTGATCGAT 447
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 352 ATGACTTCTATCGCAAGAAAGTGCAGGATTTGCTCTTCTCTTTATCCTCGACTGATTGAT 411
Query 448 ACAAGTTTCACCGTCTGGATTTTGCCATCAAGCCGGGAAAATCGAGCTTCAACACTGCCA 507
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACAAGTTTCACTGTCTGGATTTTGCCATCAAGCCGGGAAAATCGAGCTTCAACACTGCCA 471
Query 508 GAAATTGGCGGCGATGATCCTTCGGTGATATATGTCAGACCTGGATATGAAGCTAACCTT 567
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 472 GAAATTGGCGGCGATGATCCTTCGGTAATATATGTGAGACCTGGATATGAAGCTAACCTT 531
Query 568 GATTCCCTTGTGCAAGACACTATCCGCCTCACAACTTATGCTAAAGATATATGCTCGGAT 627
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 532 GATTCCCTTGTACAAGACACTATCCGACTCACAACTTATGCTAAAGATATATGCTCCGAT 591
Query 628 TCCTGCGAAAAATCGGAACCAACACTGCACTACGTTGGTCAGACAAATACAGCTTCTGT- 686
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 592 TCCTGCGAAAAATCGGAACCAACACTGCATTACGTTGGTGAGACAAATACAGCTTCTGTT 651
Query 687 CGATAAGAGATGGTCAAGACTACTTGAACTTAAGAAGAAGTAGAAACCTTTTTATTCTTT 746
| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 652 C-ATAAGCGATGGTCAAGACTACTTGAGCTTAAGAAGAAGTAGAAACCTTTAAATTCTTT 710
Query 747 GAATCTCTCTGTTCAA 762
||||||||||||||||
Sbjct 711 GAATCTCTCTGTTCAA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5