BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19810.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479498 jgi|Araly1|479498|fgenesh2_kg.3__2199__AT3G19810.1 1844 0.0
> Ahg479498 jgi|Araly1|479498|fgenesh2_kg.3__2199__AT3G19810.1
Length=1311
Score = 1844 bits (998), Expect = 0.0
Identities = 1160/1234 (94%), Gaps = 28/1234 (2%)
Strand=Plus/Plus
Query 1 GAAGTTGACCGGGTGAGACTTTTTAGGATAAACCCAAGCAGCCATTTCCGAGT-AAGAAG 59
||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||||||
Sbjct 1 GAAATTGACCGGGTGAG--GTTTTAGGATAAA-CTAAGCAGCCATTTCCGAGTAAAGAAG 57
Query 60 AGCTCTGTTTCTGAAAGAAGTTTTACAGAGTCGATCGTCTAAAGCGTTGTTGAAGCACTT 119
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 58 AGCTCTGTTTCTGAAAGAAATTTTACAGAGTCGATCGTCTAAAGC---GTTAAAGCACTT 114
Query 120 GTTAGTGG---TGCTCTGTTTCAAGCTGGATAAACCCAATCCTATT-GGGATTTGGCTGG 175
||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 115 CTTAGTGGTAATGCTCTGTTTCAAGCTCAACAAACCCAATCCTATTGGGGATTTGGCTGG 174
Query 176 ATTTTATACCATATTTTAGCATGATTGTTTGATAAACGCTTGATAAATTGCCTCTTGTTG 235
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 175 ATTTTATACCATATTTTAGCATGATTGTTTGATAAAC-CTTGATAGATTGCCTCTTGTTG 233
Query 236 TCACCTTTGCTACGAAAATGTCTCTGGTTTGCTCTTTATCTTGTGTAGCTCCCTTGCCAC 295
| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 234 TAACCTTCGCTACGAAAATGTCTCTGGTTTGCTCTTCATCTTGTGTAGCTCCCTTATCAC 293
Query 296 AGACTAAACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTAT-CT 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 294 AGACTAGACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTATGC- 352
Query 355 TCTCCCGCTGGCTATCCTAATTTTACCACCGGTATTAGGAAGCATATCAGTTACTTGTTC 414
|||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 353 TCTCCCGCCGGCTACCCTAATTTT---ACC------AGGAAGCATATCAGTTACTTGTTC 403
Query 415 ACTGAACCGATCAAGCTTCCTAGGCTAGCAAAGAGTCGGATATTAGTTAGTCAGGAGTCT 474
|| |||||| | ||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 404 ACAGAACCGCTTAAGCTTCGTTGGCTAGCAAAGAGTCGGATATTAGCTAGTCAGGAGTCT 463
Query 475 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 523
Query 535 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGTTACACATGTTGAA 594
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 524 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGCCACACATGTGGAA 583
Query 595 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGGTTGTCAACAGATGTCTCGAAGAAG 654
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 584 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGATTGTCAACAGAGGTCTCGAAGAAG 643
Query 655 AGAGCTTCTGCAATGGGACTTAGAGTGACAAAAGATGTCAAGGATTATCCAGATGGCACA 714
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 644 AGAGCTTCCGCAATGGGACTAAGAGTGACAAAAGATGTAAAGGATTATCCAGATGGCACG 703
Query 715 CCAGTTCAAGTTTCGGTTGATGTCATAAGGAAGAAGAAGAAGCTGAGACTTGATGGAATT 774
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 704 CCGGTTCAAGTTTCGGTTGATGTCATAAGAAAGAAGAAGAAACTGAGACTCGATGGAATT 763
Query 775 GTCAGGACTGTTATCACACTCGGCTGCAACAGATGTGGTGAGTCAACAGGTGAGAGCATC 834
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 764 GTCAGGACTGTTATCACACTCGGCTGCAATAGATGTGGTGAGTCAACAGGTGAGAGCATC 823
Query 835 TTCTCCAACTTCTCGCTATTACTAACCGAAGAGCCAGTTGAAGAACCCGATGTCATTGAT 894
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 824 TTCTCCAACTTCTCGCTATTACTAACCGAAGATCCAGTTGAAGAACCCGATGTCATTGAT 883
Query 895 CTAGGATTCACATTCGGTA-ATGACAAAGAAGAAGGCGAAGATGATGATGATAATGATGA 953
||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 884 CTAGGATTCACATTCGG-AGGTGACAAAGAAGAAGGCGAAGATGATGATG---ATGATGA 939
Query 954 TTCATGGATAGATTGGGAGGATAAGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 1013
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 940 TTCATGGATAGATTGGGAGGATACGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 999
Query 1014 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1059
Query 1074 TGCATGTAAAGGAATGTGCTTGAAGTGTGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1133
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1060 TGCATGTAAAGGAATGTGCTTGAAATGCGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1119
Query 1134 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAATCTTAGAGAGCAAATGCA 1193
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1120 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAACCTGAGAGAGCAAATGCA 1179
Query 1194 ACAAAAAGAGGGACTAAGGAACTAAACTCAACTC 1227
||||||||||||||| ||||||||||||||||||
Sbjct 1180 ACAAAAAGAGGGACTGAGGAACTAAACTCAACTC 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5