BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19810.1 Length=1399 Score E Sequences producing significant alignments: (Bits) Value Ahg479498 jgi|Araly1|479498|fgenesh2_kg.3__2199__AT3G19810.1 1844 0.0 > Ahg479498 jgi|Araly1|479498|fgenesh2_kg.3__2199__AT3G19810.1 Length=1311 Score = 1844 bits (998), Expect = 0.0 Identities = 1160/1234 (94%), Gaps = 28/1234 (2%) Strand=Plus/Plus Query 1 GAAGTTGACCGGGTGAGACTTTTTAGGATAAACCCAAGCAGCCATTTCCGAGT-AAGAAG 59 ||| ||||||||||||| |||||||||||| | |||||||||||||||||| |||||| Sbjct 1 GAAATTGACCGGGTGAG--GTTTTAGGATAAA-CTAAGCAGCCATTTCCGAGTAAAGAAG 57 Query 60 AGCTCTGTTTCTGAAAGAAGTTTTACAGAGTCGATCGTCTAAAGCGTTGTTGAAGCACTT 119 ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 58 AGCTCTGTTTCTGAAAGAAATTTTACAGAGTCGATCGTCTAAAGC---GTTAAAGCACTT 114 Query 120 GTTAGTGG---TGCTCTGTTTCAAGCTGGATAAACCCAATCCTATT-GGGATTTGGCTGG 175 ||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||| Sbjct 115 CTTAGTGGTAATGCTCTGTTTCAAGCTCAACAAACCCAATCCTATTGGGGATTTGGCTGG 174 Query 176 ATTTTATACCATATTTTAGCATGATTGTTTGATAAACGCTTGATAAATTGCCTCTTGTTG 235 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 175 ATTTTATACCATATTTTAGCATGATTGTTTGATAAAC-CTTGATAGATTGCCTCTTGTTG 233 Query 236 TCACCTTTGCTACGAAAATGTCTCTGGTTTGCTCTTTATCTTGTGTAGCTCCCTTGCCAC 295 | ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 234 TAACCTTCGCTACGAAAATGTCTCTGGTTTGCTCTTCATCTTGTGTAGCTCCCTTATCAC 293 Query 296 AGACTAAACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTAT-CT 354 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 294 AGACTAGACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTATGC- 352 Query 355 TCTCCCGCTGGCTATCCTAATTTTACCACCGGTATTAGGAAGCATATCAGTTACTTGTTC 414 |||||||| ||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct 353 TCTCCCGCCGGCTACCCTAATTTT---ACC------AGGAAGCATATCAGTTACTTGTTC 403 Query 415 ACTGAACCGATCAAGCTTCCTAGGCTAGCAAAGAGTCGGATATTAGTTAGTCAGGAGTCT 474 || |||||| | ||||||| | |||||||||||||||||||||||| ||||||||||||| Sbjct 404 ACAGAACCGCTTAAGCTTCGTTGGCTAGCAAAGAGTCGGATATTAGCTAGTCAGGAGTCT 463 Query 475 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 464 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 523 Query 535 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGTTACACATGTTGAA 594 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 524 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGCCACACATGTGGAA 583 Query 595 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGGTTGTCAACAGATGTCTCGAAGAAG 654 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 584 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGATTGTCAACAGAGGTCTCGAAGAAG 643 Query 655 AGAGCTTCTGCAATGGGACTTAGAGTGACAAAAGATGTCAAGGATTATCCAGATGGCACA 714 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 644 AGAGCTTCCGCAATGGGACTAAGAGTGACAAAAGATGTAAAGGATTATCCAGATGGCACG 703 Query 715 CCAGTTCAAGTTTCGGTTGATGTCATAAGGAAGAAGAAGAAGCTGAGACTTGATGGAATT 774 || |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 704 CCGGTTCAAGTTTCGGTTGATGTCATAAGAAAGAAGAAGAAACTGAGACTCGATGGAATT 763 Query 775 GTCAGGACTGTTATCACACTCGGCTGCAACAGATGTGGTGAGTCAACAGGTGAGAGCATC 834 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 764 GTCAGGACTGTTATCACACTCGGCTGCAATAGATGTGGTGAGTCAACAGGTGAGAGCATC 823 Query 835 TTCTCCAACTTCTCGCTATTACTAACCGAAGAGCCAGTTGAAGAACCCGATGTCATTGAT 894 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 824 TTCTCCAACTTCTCGCTATTACTAACCGAAGATCCAGTTGAAGAACCCGATGTCATTGAT 883 Query 895 CTAGGATTCACATTCGGTA-ATGACAAAGAAGAAGGCGAAGATGATGATGATAATGATGA 953 ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct 884 CTAGGATTCACATTCGG-AGGTGACAAAGAAGAAGGCGAAGATGATGATG---ATGATGA 939 Query 954 TTCATGGATAGATTGGGAGGATAAGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 1013 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 940 TTCATGGATAGATTGGGAGGATACGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 999 Query 1014 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1059 Query 1074 TGCATGTAAAGGAATGTGCTTGAAGTGTGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1133 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1060 TGCATGTAAAGGAATGTGCTTGAAATGCGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1119 Query 1134 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAATCTTAGAGAGCAAATGCA 1193 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1120 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAACCTGAGAGAGCAAATGCA 1179 Query 1194 ACAAAAAGAGGGACTAAGGAACTAAACTCAACTC 1227 ||||||||||||||| |||||||||||||||||| Sbjct 1180 ACAAAAAGAGGGACTGAGGAACTAAACTCAACTC 1213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52297906385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5