BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19840.1
Length=2779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929889 jgi|Araly1|929889|scaffold_302346.1 3847 0.0
> Ahg929889 jgi|Araly1|929889|scaffold_302346.1
Length=2548
Score = 3847 bits (2083), Expect = 0.0
Identities = 2396/2545 (94%), Gaps = 29/2545 (1%)
Strand=Plus/Plus
Query 142 AATGGAAGGGGAGAATACAACGGATCCGCCGTACACAACGGCGGCATCTTCGGGACAGAG 201
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 20 AATGGAAGGGGATAATACAACGGAGCCGCCGTACACGACGGCGGCATCTTCGGGACAGAG 79
Query 202 TATCTTCGTCCGTCCTCCTCCAATTGCTCCAGTCTTGGCTACTACTTCGAATTTCTCTCA 261
|||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||
Sbjct 80 TATCTTCGTCCGTCCTCCTCTAATTGCTCCAGTATTGGCTACTGCTTCGAATGTCTCTCA 139
Query 262 GTCGGAGCTGAAGGAGCTACACTCTATGTCTATTGCTAGTACAGGTTTTGTCTCTCAGTC 321
|||||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 140 GTCGGAGC---A--A-C--C-CTCTATGTCTATTGCTAGTACAGGTTTTGTCTCTCAGTC 190
Query 322 AGTTCCATATTCTGTTACTGCACAATGGGGTACTAATGCAGCAGCCTCCTCAAATGTTAA 381
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 191 AGTTCCATCTTCTGTTGCTGCACAATGGGGTTCTAATGCAGCAGCCTCCTCAAATGTTAA 250
Query 382 TCCCATACCTCAAGCTTCGCCCATGCTAGCAAATGCACCTTTTGGTCGACCAGGAACACT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TCCCATACCTCAAGCTTCGCCCATGCTAGCAAATGCACCTTTTGGTCGACCAGGAACACT 310
Query 442 CGCCCCTCCTGGACTAATGACATCTCCGCCTGCTTTTCCTGGTTCCAA-CCCTTTTTCTA 500
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 311 CGCCCCTCCTGGACTAATGACATCTCCGCCTGCTTTTCCTGGTTCCAATCCC-TTTTCTA 369
Query 501 CAACGCCAAGACCTGGGATGTCTGCAGGTCCTGCTCAAATGAATCCTGGTATTCATCCGC 560
| || |||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 370 CTACTCCAAGACCTGGGATGTCTACAGGTCCTGCTCAAATCAATCCTGGTATTCATCCGC 429
Query 561 ACATGTATCCTCCATATCA-T---T--C-AC--TGCCTGGAACGCCTCAAGGAATGTGGT 611
||||||||||||||||||| | | | || |||||||||| ||||||||||||||||
Sbjct 430 ACATGTATCCTCCATATCATTCACTGCCTACAATGCCTGGAACTCCTCAAGGAATGTGGT 489
Query 612 TGCAGCCTCCTTCTATGGGTGGTATTCCCAGGGCACCTTTTCTTTCACATCCTACTACCT 671
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 490 TGCAGCCTCCTCCTATGGGTGGTATTCCCAGGGCACCTTTTCTTTCACATCCTACTACTT 549
Query 672 TTCCTGGTTCATATCCATTTCCAGTTCGTGGAATCTCCCCTAACCTACCATATTCTGGTT 731
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 550 TTCCTGGTTCATATTCATTTCCAGTTCGTGGAATCTCTCCTAACCTACCATATTCTGGTT 609
Query 732 CTCATCCGCTTGGTGCCAGTCCTATGGGAAGTGTTGGCAATGTTCATGCATTACCAGGTC 791
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CTCAACCGCTTGGTGCCATTCCTATGGGAAGTGTTGGCAATGTTCATGCATTACCAGGTC 669
Query 792 GTCAGCCTGATATATCTCCCGGGCGAAAGACAGAAGAACTCTCAGGAATCGATGACAGAG 851
||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 670 ATCAGCTTGATATATCTCCCGGGCAAAAGACAGAAGCACTCTCAGGAATCGATAACAGAG 729
Query 852 CTGGTTCTCAACTAGTAGGAAATCGGTTAGATGCCTGGACTGCACATAAATCAGAAGCAG 911
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 730 CTGGTTCTCAACTAGTTGGAAATCAGTTAGATGCCTGGACTGCACATAAATCAGAAGCAG 789
Query 912 GAGTTCTTTACTACTATAATTCCGTTACAGGGCAATCGACCTACGAAAAGCCTCCTGGTT 971
||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 790 GAGTTGTTTATTATTATAATTCCGTTACAGGGCAATCAACCTACGAAAAGCCTCCTGGTT 849
Query 972 TTGGAGGGGAGCCTGATAAAGTGCCAGTGCAGCCAATTCCTGTTTCAATGGA-GAGTTTA 1030
||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||
Sbjct 850 TTGGAGGGGAGCCTGATAAAGTGCCTGTGCAGCCAATTCCAGTTTCTATGGAGGA-TTTA 908
Query 1031 CCTGGGACGGATTGGGCTCTTGTGTCCACAAACGACGGCAAAAAGTATTACTATAACAAT 1090
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 909 CCTGGGACGGATTGGGCTCTTGTGTCCACAAATGACGGCAAAAAGTATTACTACAACAAT 968
Query 1091 AAAACAAAGGTCAGCAGCTGGCAGATTCCTGCAGAAGTAAAAGATTTC-GGGAAGAAACT 1149
||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 969 AAAACAAAGGTCAGCAGCTGGCAAATTCCTGCAGAAGTGAAAGA-TTCGGGGAAGAAACC 1027
Query 1150 AGAGGAGAGGGCTATGGAGAGTGTAGCATCAGTGCCTAGTGCTGATTTAACTGAAAAGGG 1209
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1028 GGAGGAGAGGGCTATGGAGAGTGTAGCATCTGTGCCAAGTGCTGATTTCACTGAAAAGGG 1087
Query 1210 TTCTGATCTAACAAGTTTGAGCGCACCTGCTATTAGCAATGGTGGCCGGGATGCTGCATC 1269
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1088 TTCTGATCTATCAAGTTTGAGCGCACCTGCTATCAGCAATGGTGGCCGGGATGCTGCATC 1147
Query 1270 TCTAAAAACTACAAATTTTGGTTCGTCCGCGCTGGATTTGGTTAAAAAGAAACTACATGA 1329
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1148 TCTAAAAACTACAAATTTTGGTTCGTCGGCACTGGATTTGGTTAAAAAGAAACTACATGA 1207
Query 1330 TTCTGGAATGCCTGTCTCATCTACGATAACATCTGAAGCAAATAGTGGTAAAACAACTGA 1389
||||||| |||| ||||||||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 1208 TTCTGGAGTGCCCGTCTCATCTACGACAACATCTGAAGCAAATGGTGGTAAAGCAAGTGA 1267
Query 1390 GGTCACACCCAGTGGAGAAAGTGGAAATAGTACGGGTAAGGTGAAAGATGCTCCTGGAGC 1449
||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 1268 GGTCACACCAAGTGGAGAAAGTGGAAATGGTACGGGTAAGATAAAAGATGCTCCTGGAGC 1327
Query 1450 TGGGGCCCTTTCCGATTCTTCTTCAGATTCGGAAGATGAAGATAGTGGACCATCGAAGGA 1509
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1328 TGGGGAACTTTCTGATTCTTCTTCAGATTCCGAAGATGAAGATAGTGGACCATCAAAGGA 1387
Query 1510 AGAGTGTTCTAAACAGTTTAAGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAA 1569
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 AGAGTGTTTTAAACAGTTTAAGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAA 1447
Query 1570 ATGGGAGAAGGAATTGCCAAAAATTATCTTTGACCCTCGCTTTAAGGCAATACCAAGTCA 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 ATGGGAGAAGGAATTGCCAAAAATTATCTTTGACCCTCGCTTTAAGGCAATACCAAGTCA 1507
Query 1630 TTCTGTTAGAAGATCATTATTTGAGCAGTACGTAAAGACACGAGCTGAGGAAGAACGTAG 1689
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1508 TTCTGTTAGAAGATCTTTATTTGAGCAGTATGTAAAGACACGCGCTGAGGAAGAACGTAA 1567
Query 1690 GGAAAAGCGTGCTGCTCATAAGGCAGCTATTGAAGGTTTCAGGCAGTTGCTGGATGATGC 1749
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1568 GGAAAAGCGTGCTGCTCATAAGGCAGCTATTGAAGGATTCAGGCAGTTGCTGGATGAAGC 1627
Query 1750 GTCTACGGACATTGATCAACACACTGACTATCGTGCTTTTAAAAAGAAATGGGGGAATGA 1809
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1628 GTCTACGGACATCCATCAACACACTGATTATCGTGCTTTTAAAAAGAAATGGGGGAATGA 1687
Query 1810 TCTCCGGTTCGAAGCAATTGAGCGTAAGGAGCGGGAGGGTTTACTGAATGAAAGAGTCCT 1869
|||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct 1688 TCTCCGGTTCGAAGCACTTGAGCGGAAGGAGCGGGAGGCTTTGCTGAATGAAAGGGTCCT 1747
Query 1870 TTCTTTGAAACGAAGTGCTGAACAAAAGGCACAAGAAATTCGCGCTGCTGCTGCCTCTGA 1929
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1748 TTCTTTGAAACGAACTGCTGAACAAAAGGCGCAAGAAATTCGCGCAGCTGCTGCCTCTGA 1807
Query 1930 TTTCAAGACAATGCTACGGGAAAGAGAAATATCAATAAATTCACATTGGTCCAAGGTGAA 1989
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1808 TTTCAAGACAATGCTACGCGAAAGAGAAGTATCATTAAATTCACATTGGTCCAAGGTGAA 1867
Query 1990 GGATAGTCTGAGAAATGAACCAAGATATAGATCCGTTGCGCACGAGGATAGGGAGGTTTT 2049
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1868 GGATAGTCTGAGAAATGAACCAAGATATAGATCTGTTGCACACGAGGACAGGGAGGTTTT 1927
Query 2050 TTATTATGAGTACATTGCGGAACTAAAAGCTGCACAAAGGGGAGATGATCATGAGATGAA 2109
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1928 TTATTATGAGTACATTGCGGAACTAAAATCTGCACAAAGGGGAGATGATCATGCGATGAA 1987
Query 2110 AGCCAGAGACGAAGAGGACAAACTGAGGGAACGGGAGCGTGAGTTGCGGAAACGCAAAGA 2169
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 AGCCAGAGACGAAGCGGACAAACTGAGGGAACGGGAGCGTGAGTTGCGGAAACGCAAAGA 2047
Query 2170 AAGAGAAGTGCAAGAGGTGGAAAGGGTACGACAAAAAATTAGAAGGAAAGAGGCAAGCTC 2229
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2048 AAGAGAAGTGCAAGAGGTGGAAAGAGTACGACAAAAAATTAGAAGGAAAGAGGCAAGCTC 2107
Query 2230 CTCTTATCAAGCTTTGTTAGTGGAAAAAATCAGAGACCCTGAGGCATCATGGACGGAATC 2289
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2108 CTCTTATCAAGCTTTGTTAGTGGAAAAAATCAGAGACCCTGAGGCATCCTGGACGGAATC 2167
Query 2290 TAAGCCAATACTTGAGAGGGATCCTCAAAAACGTGCCTCTAATCCAGACTTAGAACCTGC 2349
|||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 2168 TAAGCCAAAACTTGAGAGGGATCCTCAAAAACGAGCCTCTAATCCAGACTTGGATCCTGC 2227
Query 2350 TGATAAAGAGAAGCTATTCCGAGACCACGTAAAGTCATTATATGAGCGATGTGTTCATGA 2409
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2228 TGATAAAGAGAAGCTATTCCGAGACCACATAAAGACATTATATGAGCGATGTGTTCATGA 2287
Query 2410 CTTCAAAGCTCTTCTAGCTGAAGCGTTGTCATCTGAAGCAGCTACTCTACAAACAGAAGA 2469
||||||||||||||||| |||||| |||||||||||||| ||| ||| ||||||||||||
Sbjct 2288 CTTCAAAGCTCTTCTAGTTGAAGCCTTGTCATCTGAAGCTGCTTCTCAACAAACAGAAGA 2347
Query 2470 TGGAAAGACTGCGCTTAATTCTTGGTCAACGGCTAAACAAGTACTGAAACCCGATATCAG 2529
|||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2348 CGGAAAGACTGTGCTTGATTCTTGGTCAGCAGCTAAACAAGTACTGAAACCCGATATCAG 2407
Query 2530 GTACAGCAAGATGCCGAGGCA-AGATAGGGAAGTCGTATGGCGTCGATATGTTGAGGATA 2588
||||||||||||||| ||| | ||||||||||||| ||||||| ||||||| ||||||||
Sbjct 2408 GTACAGCAAGATGCCAAGG-AGAGATAGGGAAGTCTTATGGCGCCGATATGCTGAGGATA 2466
Query 2589 TATCGAGGAAACAGAGACATGAAAACTATCAGGAGGAGAAACAACGAGATTACAAGACCT 2648
| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 2467 TCTCGAGGAAACAGAAACAAGAAAACTATCAGGAGGAGAAACAAAGAGATTATAAGACCT 2526
Query 2649 aaaaaaaaCCTTGAACCAATAGGCT 2673
||||| ||| |||| |||||||
Sbjct 2527 AAAAAT--CCTA-AACCTATAGGCT 2548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104862444485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5