BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19850.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929890 jgi|Araly1|929890|scaffold_302347.1 2427 0.0
Ahg923472 jgi|Araly1|923472|scaffold_104753.1 726 0.0
> Ahg929890 jgi|Araly1|929890|scaffold_302347.1
Length=1676
Score = 2427 bits (1314), Expect = 0.0
Identities = 1537/1643 (94%), Gaps = 21/1643 (1%)
Strand=Plus/Plus
Query 79 ATGCAAAAGAAGTTGATACAATGTCTCTT-TGCTGTGATCTTCAAATCAATCTCAATAAC 137
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGCAAAAGAAGTTGATACAATGTCTCTTCT-CTGTGATCTTCAAATCAATCTCAATAAC 59
Query 138 CAATTTACTTTCTTCGTCAATCAGGATTTGATCTCAGAGTACTCAGGCTTCTTGAGGAAG 197
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 60 CAATTCACTTTCTTCGTCAATCAGGATTTGATTTCAGAGTACTCAGGGTTCTTGAGGAAG 119
Query 198 ATGATAAAACAGAGCAATAAGAAGAAAAAGAATCACAAGAACAGTAGAATCATCATCGAG 257
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 120 ATGATAAAACAGAGCAATAAGAAGAAGAAGAATCACAAGAACAGTAGAATCATTATCGAA 179
Query 258 GTTGAAGATTTTCCAGGTGGGTCAGATGGGTTCGACTTGGTTTTAAGATTCTG-T----T 312
|| |||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 180 GTCGAAGATTTTCCAGGTGGGTCAGATGGGTTCGACTTGGTTTCAAGATTCTGTTACGGT 239
Query 313 -ATGGTGGAGGAATCTCGATAGATGTCTCAAATGTGTCCATTTTGCATTGCTCTTCTGTC 371
|||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 240 AATGGCGGAGGAATCTCGATCGATGTCTCAAATGTTTCCATTTTGCATTGTTCTTCTGTC 299
Query 372 TTCCTTGAGATGACAGAGAAACTCTGTTCCTCGAATCTCTTGCTTCGAACAGAGAAGTTT 431
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 300 TTCCTTGAGATGACAGAGAAACTCTGTTCCTCGAATCTTTTGCTTCAAACAGAGAAGTTT 359
Query 432 CTAGAAGGAATGTTCTACTGGTCCTGGAACGACATCGTATTGTGTCTCAAGAGCTGCGAG 491
||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 360 TTAGAAGGTATGTTTTACTGGTCATGGAATGACATCGTTTTGTGTCTCAAGAGCTGCGAA 419
Query 492 CAAGTGTTCTTACACGCTGATTCTTACGGTCTTGTTGATAAGCTTGTTTTCGGGGTTTTA 551
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAAGTGTTCCTACACGCAGATTCTTACGGTCTTGTTGATAAGCTTGTTTTCGGGGTTTTA 479
Query 552 GCCAAAATCCCTCAGAATTCAGACGTGAGTCATGTCTTTTCATCATCCTCTCCGTCTTCC 611
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 480 GCCAAAATCGCTCAGAATTCAGACATGAGTCATGTCTTTTCATCATCCTCTCCG---T-C 535
Query 612 TCTGCCTCTGCCTCAGCCTCCTCTCAGTCGCCGGAGACGGCAATGATTAGGTCGT-ATTC 670
| | |||||||||||||||||||||| |||||||||||||||| || |||||| | ||||
Sbjct 536 T-T-CCTCTGCCTCAGCCTCCTCTCATTCGCCGGAGACGGCAAGGAATAGGTC-TGATTC 592
Query 671 AGACAAAAGGTCTACTTCGAGGTCTTTTTCTTGCAGGACAAGTAACGAGTGGTGGTTCGA 730
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 593 TGACAAACGGTCTACTTCGAGGTCGCTTTCTTGCAGGACAAGTAACGAGTGGTGGTTCGA 652
Query 731 CGATATGTCAATTCTCGGGCCAAAAATCATTGAAAAGCTGATAAATACACTTGGTGCGCA 790
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 CGATATGTCAATTCTCGGGCCAAAAATCATTGAAAAGCTGATAAAAACACTTGGTGCGCA 712
Query 791 TGATAAGAACAATGACAGCTTGGTCCTCACAAAATTTCTTCTCCATTACCTCAAGACAAA 850
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 713 TGATAAGAACAATGACAGCTTGGTCCTCACAAGATTTCTCCTCCATTACCTCAAGACAAA 772
Query 851 GGTCCCAAACAAGTCAACCAACAAGCTCGAGTATTCAGGTTTAGCTGATACAGCGGTTCA 910
||||| |||||| |||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 773 GGTCCAAAACAAATCAAACTACAAGCTCGAGTATGCAGGTTTAGCTGATACAGCGGTTCG 832
Query 911 AGGAGTGGTTTTCGCAGCGAAAACCGCGTTTTCATGCAGAAAAATGTTCTGGGTTCTGCG 970
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 833 AGGAGTGGTTTTCGCGGCGAAAACCGCGTTTTCCTGCAGAAAAATGTTCTGGGTTCTTCG 892
Query 971 AGTTTTATCGGGATTTAGCATAAGTAAAGAATCAAGAATTGGTTTAGAGAGGGTTATAGG 1030
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 893 CGTTTTATCGGGATTTAGCATCAGTAAAGAATCAAGAATTGGTTTAGAGAGAGTTATAGG 952
Query 1031 AGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCAGCTGGAGGAAAAGGAGA 1090
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 953 AGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCCGCAGGAGGAAAAAAAGA 1012
Query 1091 AAAAGGGGTTTACGATGTGGATTTGGTGATAAGATTACTCAAAGTGTTTGTAAGAATTGG 1150
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1013 AAAAGGGTTTTACGATGTGGATTTGGTGATAAGATTACTCAAAGTGTTTGTGAGAATTGG 1072
Query 1151 AAACACAGAAGAAGGAGATCAGAATTTGAGAATGAGAAGAATTGGGAAGTTGATTGATAA 1210
|||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 AAACACAGAAGAAG-A-A-CAGAATTTGAAAATGAGAAGAATTGGGAAGTTGATTGATAA 1129
Query 1211 GTATCTCAGAGAGATATCTCCAGACCAGAATCTTAAAGTGTCAAAGTTTCTTGAAGTTGC 1270
|||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1130 GTATCTGAGAGAGATTTCTCCAGACCAGAGTCTTAAAGTGTCAAAGTTCCTTGAAGTTGC 1189
Query 1271 AGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGATTATACAGAGCCATTAACAT 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1190 AGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGATTATACAGAGCCATTGATAT 1249
Query 1331 CTATCTTGAGTCTCATCCGAAACTATCATCCGAGGATAGAACAAAACTATGTCGATGTCT 1390
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1250 CTATCTTGAGTCTCATCCAAAACTATCAACCGAGGATAGAACAAAACTATGTCGATGTCT 1309
Query 1391 AAACTACAAGAAATTGACATTGGACACATGCAAACAACTTGCAAAAAATCCCAAGATCCC 1450
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1310 AAACTACAAGAAATTTACATTGGAAACATGCAAACAACTTGCGCAAAATCCCAAGATCCC 1369
Query 1451 TCCAAATATTGCAGTTCAAGCACTCAAGTCACAACAATTATCAAACGAGACTCGACCACA 1510
||| |||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1370 TCCTAATATTGCAGTTCAGGCACTTAAGTCACAACAATTGTCAAACGAGACTCAACCACA 1429
Query 1511 CTCAAGAGAGGACAAGAACAAAGTAAACAAGATCTGGAATTCACGTAAGTACTTAGAAGA 1570
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1430 CTCAAGAGAGGACAAGAAGAGAGTAAACAAGATCTGGAATTCGCGTAAGTACTTAGAAGA 1489
Query 1571 GAAACCAATACTGGTGTGTTTGAAAGGTTTTGATATGTCGGAGAAGTTTGAAGATGATCT 1630
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1490 GAAACCAATACTGGTGCATTTGAAAGGTTTTGGGATGTCGGAGAAGTTTAAAGATGATCT 1549
Query 1631 AATGATGAATTTGGAGAGGAAGCAATGGAATAATTCTG-AAAAAGTTAGTAAGGAGAAGA 1689
|| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||
Sbjct 1550 AAAGATGAATTTGGAGAGGAAGCAATGGAATAGTTCTGGAAAAAATT-GTAAGGAAAAGA 1608
Query 1690 AGAGTGAAGTAATGTCAAGATCT 1712
||||||||||| ||||||| |||
Sbjct 1609 AGAGTGAAGTAGTGTCAAGTTCT 1631
Score = 78.7 bits (42), Expect = 2e-13
Identities = 52/56 (93%), Gaps = 4/56 (7%)
Strand=Plus/Plus
Query 1734 TCAAGTTCTAGTTTTCCAAGGCTTTGTTAAATAATTAATTCACTCGTCAttttttt 1789
|||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1623 TCAAGTTCTAGTTTTCCAAGGCTTTG-T---TAATTAATTCACTCGTCATTTTTTT 1674
> Ahg923472 jgi|Araly1|923472|scaffold_104753.1
Length=1612
Score = 726 bits (393), Expect = 0.0
Identities = 1107/1431 (77%), Gaps = 131/1431 (9%)
Strand=Plus/Plus
Query 114 GATCTTCAA-ATCAATCTCAATAACCAATTTACTTTCTTCGTCAATCAGGATTTGATCTC 172
|||||| || |||||||||||| ||||| || |||||| |||||||||| |||| ||
Sbjct 36 GATCTT-AAGATCAATCTCAATGGCCAATACACATTCTTCCTCAATCAGGACGTGATTTC 94
Query 173 AGAGTACTCAGG-CTTCTTGAGGAAGATGATAAAACAGAGCAATAAGAAGAAAAAGAATC 231
| ||||||| || | |||||||||||||| ||||||||||| ||| | || ||||
Sbjct 95 AAAGTACTCTGGAAGT-TTGAGGAAGATGATTAAACAGAGCAA-AAG--G-AAGAGAA-- 147
Query 232 ACAAG-AACAGTAGAATCAT--C-ATCGAGGTTGAAGATTTTCCAGGTGGGTCAGATGGG 287
||||| || || |||||||| | |||||| |||| |||||||| ||||| ||||||||
Sbjct 148 ACAAGAAAAAG-AGAATCATCACTATCGAGATTGATGATTTTCCTGGTGGACCAGATGGG 206
Query 288 TTCGA-CTTGGTTTTAAGATTCTGTT---ATGGTGGAGGAATCTCGATAGATGTCTCAAA 343
|| || | |||||| ||| ||||||| | |||| |||||| || |||||||||||
Sbjct 207 TTTGAGC-TGGTTTCAAGGTTCTGTTACAACAACGGAGAAATCTCAATCGATGTCTCAAA 265
Query 344 TGTGTCCATTTTGCATTGCT-CTTCTGTCTTCCTTGAGATGACAGAGAAACTCTGTTCCT 402
||| || | |||| | |||| | ||||| || || | ||| | ||||| |||||| ||
Sbjct 266 TGTCTCGACTTTGTACTGCTGC-TCTGTTTTTCTAGCCATGTCGGAGAAGTTCTGTTTCT 324
Query 403 CGAATCTCTTGCTTCGA-ACAGAGAAGTTTCTAGAAGGAA-TGTTCTACT-GGTCCTGGA 459
| |||||||| |||| | || ||||||||||||||| ||| |||| || | |||| ||||
Sbjct 325 CTAATCTCTTCCTTC-AGACCGAGAAGTTTCTAGAA-GAAGTGTTATA-TGGGTCTTGGA 381
Query 460 ACGACATCGTATTGTGTCTCAAGAGCTGCGAGCAAGTGTTCTTACACGCTGATTCTTACG 519
||||||||| ||||||||||||| |||||||||||||||||| || || ||||| || |
Sbjct 382 GCGACATCGTTTTGTGTCTCAAGAACTGCGAGCAAGTGTTCTTCCAAGCAGATTCGTATG 441
Query 520 GTCTTGTTGATAAGCTTGTTTTCG-GGGTTTTAGCCAAAATCCCTCAGAATTCAGACGTG 578
||||||| ||||| || | |||| | ||| | |||||||| ||| |||||||||
Sbjct 442 GTCTTGTAGATAAACTCATCTTCGCAGCTTTGA-CCAAAATCTCTCGGAATTCAGA---- 496
Query 579 AGTCATGTCTTTTCATCATCCTCTCCGTCTTCCTCTGCCTCTGCCTCAGCCTCCTCTCAG 638
| || ||||| | || ||| || | | |||| || | || ||||||||||
Sbjct 497 A-ACA----TTTTC-T--TCTTCTTCG-C-T-CTCT---TC--CTTC-GCCTCCTCTCTT 539
Query 639 TCGCCGGAGACGG-CAATGATTAGGTCGTATTCAGACAAAAGGTCTACTTCGA-GGTCTT 696
|| || |||| || ||| || | | || | ||||||| |||| || ||| | |||||
Sbjct 540 TCTCCTGAGATGGCCAA-GAACACGCCGGAATCAGACAGTAGGTATATTTC-ACGGTCTG 597
Query 697 TTTCTTGCAGG-ACAAGTAACGAGTGGTGGTTCGACGATATGTCAATTCTCGGGC-CAAA 754
|||||||| || | ||| |||||||||||||||||||||||| ||| ||| | | |
Sbjct 598 TTTCTTGC-GGAAGAAGCAACGAGTGGTGGTTCGACGATATGACAACTCT-TTCCTCGAG 655
Query 755 AATCA--TTGAAAAGCTGATAAAT-A-CACTTGGTGCGCATGATAAGA-ACA-AT-GACA 807
|| | ||| | | || || || | || || | | || | | |||| | | || | |
Sbjct 656 TATTATTTTG-AGA-CTAAT-CATGATCA-TT-G-GAGC-TTACAAGACAAACATAAAAA 708
Query 808 GCTTGGTCCTCACAAAATTTCTTCTCCATTACCTCAAGACAAAGGT-C---CCAAA-CAA 862
|||| |||| || | ||||||||||||||| ||||||||||| | | ||||| |||
Sbjct 709 GCTTAGTCCAAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAA 768
Query 863 G------T-CA-A-C-------CAACAAGCTCGAGTA-TTCAGGTTTAGCTGATACAGCG 905
| | || | | |||||||||||||| | || ||||||||| ||||||
Sbjct 769 GAACTACTACAGAGCTTATGAGGAACAAGCTCGAGTACTCCA-ATTTAGCTGACACAGCG 827
Query 906 GTTCAAGGAGTGGTTTTC-GCAGCGAAAACCGCGTTTTCATGCAGAAAAATGTTCTGGGT 964
| | ||||||| | |||| |||| ||||||||||||||| ||||| ||| | || |||||
Sbjct 828 GCTAAAGGAGT-GATTTCTGCAGGGAAAACCGCGTTTTCTTGCAGGAAACTCTTTTGGGT 886
Query 965 TCTGCGAGTTTTATCGGGATTTAGCATAAGTAAAGAATCAAGAATTGGTTTAGAGAGGGT 1024
||| | |||||||| | |||||| |||||| ||| || |||||||||||||| | |
Sbjct 887 TCTTTGGGTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCGAGAATTGGTTTAGAAACCCT 946
Query 1025 TATAGGAGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCAGCTGGAGGAAA 1084
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
Sbjct 947 AATAGGAGAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATACCTGCAGGAGG--A 1004
Query 1085 AGGAGAA-AAAG-GGGTT-TACGATGTGGAT-TTGGTGATAAGATTACTCAAAGTGTTTG 1140
|| | || | || || || ||| |||||||| || |||||||||||||| ||||||||||
Sbjct 1005 AGCA-AAGAGAGCGGTTTCTACAATGTGGATCTT-GTGATAAGATTACTAAAAGTGTTTG 1062
Query 1141 TAAGAATTGGAAACACAGAAGAAG-GAGATC-AGA-ATTTGAGA-ATGAGAAG-AATTGG 1195
| ||| | |||| |||||||| | ||| ||| | || | |||| ||| ||||||
Sbjct 1063 T--GAA---G-AACAGAGAAGAAGAAATATCAAGAGAGAAGA-ACATGA-AAGAAATTGG 1114
Query 1196 GAAGTTGATTGATAAGTATCTCAGAGAGATATCTCCAGACCAGAATCTT-AAAGTGTCAA 1254
||| ||||||||||||||| | ||||||||||||||||| |||||| || ||||| || |
Sbjct 1115 GAAATTGATTGATAAGTATTTGAGAGAGATATCTCCAGATCAGAAT-TTGAAAGTCTCCA 1173
Query 1255 AGTTTCTTGAAGTTGCAGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGA-TTA 1313
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1174 AGTTTCTTGGTGTTGCAGAGAGTTTGCCAGATTCAGCTAGAGATTGCTTTGATGGAGTT- 1232
Query 1314 TACAGAGCCATTAACATCTATCTTGAGTCTCATCCGAAACTATCATCCGAGGATAGAACA 1373
||||||| ||| |||||||||| ||||||||||||| ||| || || | ||| |||||
Sbjct 1233 TACAGAGGAATTGACATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACA 1292
Query 1374 AA-ACTATGTCGATGTCTAAACTACAAGAAATTGACATTGGACACATGCAAACAACTTGC 1432
| | ||||||||||||| |||||||||||| | ||| |||| || |||||||| || ||
Sbjct 1293 GAGA-TATGTCGATGTCTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGC 1351
Query 1433 AAAAAATCCC-AAGATCCCTCCA-AATATTGC-AGTTCAAGCACTCAAGTC 1480
| ||| ||| |||||||||||| || || || | || ||||||| |||||
Sbjct 1352 CAGAAA-CCCTAAGATCCCTCCAGAA-ATCGCCA-TTGAAGCACTTAAGTC 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5