BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19860.2
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479503 jgi|Araly1|479503|fgenesh2_kg.3__2204__AT3G19860.1 1472 0.0
> Ahg479503 jgi|Araly1|479503|fgenesh2_kg.3__2204__AT3G19860.1
Length=1130
Score = 1472 bits (797), Expect = 0.0
Identities = 862/892 (97%), Gaps = 10/892 (1%)
Strand=Plus/Plus
Query 158 AAGAGGAGGTCATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGA 217
||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 240 AAG-GGAGGTCATGGACGTTTCTGCTAGAAAGTCACAAAAGGCAGGGCGCGAAAAATTGA 298
Query 218 GGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATCCAGAGAGAC 277
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GGAGGGAAAAACTTAATGAGCATTTTGTTGAATTGGGAAATGTACTCGATCCAGAGAGAC 358
Query 278 CCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACAT 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACAT 418
Query 338 CTGAAGTCAACAAACTGAAATCTGAGTACACCGCATTGACAGATGAGTCCCGCGAGTTGA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTGAAGTCAACAAACTGAAATCTGAGTACACCGCATTGACAGATGAGTCCCGCGAGTTGA 478
Query 398 CACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATC 457
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGAGATAGAGAATC 538
Query 458 TCAATCTTCAATACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATC 517
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTAATCTCCAATACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATC 598
Query 518 ACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTGCTATGCCTC 577
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 599 ACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCAATGCCTATGGCTATGCCTC 658
Query 578 CCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACC 718
Query 638 CTAGCATGATCCCAGCTCCATGTCCTACATACATGCCCTACATGCCTCCTAATACAGTCG 697
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 719 CTAGCATGATCCCAGCTCCATGTCCTACATACATGCCGTACATGCCTCCTAATACAGTTG 778
Query 698 TTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAG 757
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TTGAACAACAATCCGTGCACATTCCACAGAACCCGGGTAACCGTTCTCGGGAACCTAGAG 838
Query 758 CAAAGGTTTCAAGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACAC 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAAGGTTTCAAGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACAC 898
Query 818 AACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAAGGCCAGAGA 877
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AACTCGAGTTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAAGGCCAGAGA 958
Query 878 AGACAAAGAGATGTAAGAGAAACAACAACAACAACT-CAA----T----AGAAGAAAGCT 928
||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 959 AGACAAAGAGATGTAAGAGAAACAACAACAACAACAACAACAACTCCGTAGAAGAAAGCT 1018
Query 929 CTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGACCACAGTTCTTCCAGTAGCG 988
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCATTCTAGCAAATGTTCATCTTCTCCGAGCGTACGAGACCACAGTTCTTCCAGTAGCG 1078
Query 989 TAGCTGGTGGCCAAAAACCTGATGATGCAAAATGATTCGAAAGAATCTGATG 1040
||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 1079 TAGCTGGTGGCCAAAAACCTGATGACGCAAAATGACTCGAAAGAATTTGATG 1130
Score = 172 bits (93), Expect = 4e-42
Identities = 125/138 (91%), Gaps = 11/138 (8%)
Strand=Plus/Plus
Query 12 GGGGATAAGAGAAAATGGAATAATGCTTGTgagcagagagagagagcgagcgaggaggct 71
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1 GGGGATAAGAGAAAATGGAATAATGCTTGTGAGC----AGAGAGAGCGAG-GAGGAGGCT 55
Query 72 agagaatcgagaATCGATCTTCGCCGAACCACCTTGTCTTCTCTT-----AGCTCATCGA 126
|||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 56 AGAGAA-CGAGAATCTTTCTTCGCCGAACCACCTTGTCTTCTCTTCTCTTAGCTCATCGA 114
Query 127 ATCTCTCCGTCGCCGTCG 144
||||||||||||||||||
Sbjct 115 ATCTCTCCGTCGCCGTCG 132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5