BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19880.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929896 jgi|Araly1|929896|scaffold_302353.1 296 2e-79
Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1 206 4e-52
Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772 182 7e-45
Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001 178 9e-44
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 95.3 9e-19
Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 95.3 9e-19
> Ahg929896 jgi|Araly1|929896|scaffold_302353.1
Length=229
Score = 296 bits (160), Expect = 2e-79
Identities = 194/209 (93%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGTGATCTTACGCAGGATTTGGTAGAGGAGATACTGTCTAGGGTTCCG 60
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGACGATGATGAGCGATCTTACGCAGGATTTGGTAGAGGAGATACTGTGTAGGGTTCCT 80
Query 61 ATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAAGAA 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 81 ATAACTTCTCTAGGAGCAGTGAGATCTACTTGCAAAGGATGGAACGCTTTATCCAAAGAA 140
Query 121 CGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTA-------GGGTTCATGATGTT 173
||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 141 CGGATTCTATGTATAGGAGAACCAAAACAACAGTTTCTACTTTCTAGGGTTCATGTTGTT 200
Query 174 GGATTATAGGCTTTGCTCAATGAGGTTCA 202
||||||||||||||| |||||||||||||
Sbjct 201 GGATTATAGGCTTTGTTCAATGAGGTTCA 229
> Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1
Length=933
Score = 206 bits (111), Expect = 4e-52
Identities = 195/234 (83%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGTGATCTTACGC-AGGATTTGGTAGAGGAGATACTGTCTAGGGTTCC 59
|||||||||||| ||||||| | | |||||||||||||||||||||| |||| || ||
Sbjct 1 ATGACGATGATGTCTGATCTTTC-CAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59
Query 60 GATAACTTCTCTAGGAGCAGTGAGATCCAC-CTGCAAAGGATGGAACGCTTTATCCAAAG 118
|||||||||||||||||||||||||||||| | ||||| ||||||||| | ||||||||
Sbjct 60 GATAACTTCTCTAGGAGCAGTGAGATCCACTC-GCAAACAATGGAACGCCTCATCCAAAG 118
Query 119 AACGGAT-TCTATGTATAGGAGAACCAAAACAGCAGTTTCT-AGGGTTCATGATGTTGGA 176
| ||| | | | |||| || |||||||| |||||||||| ||| |||||| || ||||
Sbjct 119 ACCGGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATGGA 176
Query 177 TTATAGGCTTTGCT--CAATGAGGTTCAATCTTCACGGAATCCTCAACGAAGAC 228
| ||||| ||| || |||||| |||||||| |||||||||||||| | ||||
Sbjct 177 TCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGAC 228
Score = 82.4 bits (44), Expect = 7e-15
Identities = 124/160 (78%), Gaps = 15/160 (9%)
Strand=Plus/Plus
Query 805 ATTTGGGTTACTACTAAGATTGAGCCCAATGTGGTGTTTTGGAAAC-CCTTCTTAAAAGT 863
|||||||| ||||||||||||||| |||||| |||||| ||| | | ||| || |||||
Sbjct 490 ATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGG-AGCAACTTGTTTAAAGT 548
Query 864 TGATATTGAGA-CAGT-ACTCGG--TGCTCTTC-----T-T-GATTTTCAGCTTGACAGT 912
|||||| || | || | | | || || | ||| | | || | ||| || ||||
Sbjct 549 TGATATGGA-ACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC-TGGCAGT 606
Query 913 TTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 952
|| || ||||||||||||||||||||||||||||||||||
Sbjct 607 TTTTTTATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 646
> Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772
Length=1146
Score = 182 bits (98), Expect = 7e-45
Identities = 193/237 (81%), Gaps = 14/237 (6%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGTGATCTTACGC-AGG-ATTTGGTAGAGG-AGATACTGTCTAGGGTT 57
||||||| ||| ||||||| | | ||| ||||||||| || ||||| |||||| ||||
Sbjct 1 ATGACGACGATCTCTGATCTT-C-CAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTT 57
Query 58 CCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAA 117
|||||||||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 58 CCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAA 117
Query 118 GAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGAT 177
| ||||||||||||| || ||| ||| || |||||| | |||||||||||| | |
Sbjct 118 GTTCGGATTCTATGTAAAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAG 177
Query 178 TATAGGCTTTGCTCAATGAG-G-TT----CAATCTTCACGGAATCCT-CAACGAAGA 227
|||| |||||| ||| |||| | || ||||||||| |||| ||| |||||||||
Sbjct 178 TATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAA-CCTTCAACGAAGA 233
> Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001
Length=1068
Score = 178 bits (96), Expect = 9e-44
Identities = 191/235 (81%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGTGATCTTACGC-AGG-ATTTGGTAGAGG-AGATACTGTCTAGGGTT 57
||||||| ||| ||||||| | | ||| ||||||||| || ||||| |||||| ||||
Sbjct 1 ATGACGACGATCTCTGATCTT-C-CAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTT 57
Query 58 CCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAA 117
|||||||||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 58 CCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAA 117
Query 118 GAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGAT 177
| ||||||||||||| || ||| ||| || |||||| | |||||||||||| | |
Sbjct 118 GTTCGGATTCTATGTAAAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAG 177
Query 178 TATAGGCTTTGCTCA-A---TGAGGTTCAATCTTCACGGAATCCT-CAACGAAGA 227
|||| |||||| ||| | | | ||||||||||| |||| ||| |||||||||
Sbjct 178 TATAAGCTTTGTTCACAAACTTTG-TTCAATCTTCATGGAA-CCTTCAACGAAGA 230
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 95.3 bits (51), Expect = 9e-19
Identities = 102/125 (82%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 906 TGACAGTTTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAGTTCAAACAAA-T 964
||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || |
Sbjct 1530 TGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGT 1589
Query 965 CAAAATGCTACAAAACAGCTTACATTATTGGAGA-AGATAGATACTTGAAAGA-AGTGGA 1022
||| || | | | ||||| || ||| |||| | ||| ||| |||||| | ||||||
Sbjct 1590 TGAAAC-CT-CTA--CTGCTTATATCATTAGAGATA-ATAAATATTTGAAA-ACAGTGGA 1643
Query 1023 TCTTG 1027
|||||
Sbjct 1644 TCTTG 1648
> Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315
Length=1137
Score = 95.3 bits (51), Expect = 9e-19
Identities = 298/411 (73%), Gaps = 42/411 (10%)
Strand=Plus/Plus
Query 649 TTAATCTGTTTTGATTTTAC-GGCAGAGAGATTTGGCA-AGTTTCTTCATCTACCGTTTC 706
||| ||||||| |||||||| | |||||||||||| | | ||| ||||| |||||||
Sbjct 658 TTACTCTGTTTCGATTTTACAAG-AGAGAGATTTGG-ACCGGCTCTGCATCTTCCGTTTC 715
Query 707 AGTTTGATATT-GATTTCGGA-GATACCGGAGGTCTATCTTGTGTTAAAGAAGAGAAACT 764
| | |||| || ||| | || |||| | | ||| |||| |||| ||||||| | ||
Sbjct 716 ACTGTGATGTTAGATAT--GATGATA--TG-GTTCTGTCTTCAGTTAGAGAAGAGCATCT 770
Query 765 CGCGGTGTTACTTAAACGCTAT-GATCA-AAATGTGATAGAGATTTGGGTTACTACTAAG 822
|| |||||| || | || | | ||| | | || ||| ||||| ||| |||| ||||||
Sbjct 771 TGCAGTGTTATTTCAGCG-TTTAGAT-ACAGATAAGATGGAGATATGGATTACAACTAAG 828
Query 823 ATTGAGCCCAATGTGGTGTTTTGGAAAC-CCTTCTTAAAAGTTG-ATATTG-AGACAGT- 878
||||||||||||| ||||| ||| ||| |||||| | || ||| | ||||| |
Sbjct 829 ATTGAGCCCAATGCGGTGTCATGG-AACAAGTTCTTAGCCG-TGAATA-CGAAGACAATC 885
Query 879 ACTCGGTGCT-CTTCTTGA-TTTTCAGCTTGACAGTTTCTTCATTGACGAAGAGAAGAAA 936
||| ||| | | |||| || | || | |||||||| |||| || |||||||||
Sbjct 886 ACT-GGTTTTGAGT-TTGAGGTTGAACCTAG-GAGTTTCTTTGTTGATGAGGAGAAGAAA 942
Query 937 CTCGCGGTG-GTT-T--T-T----AG-TTCAAACAAATCAA-A-ATG---CTACAAAACA 981
| || ||| || | | | || ||||||| | ||| | | ||||||||||
Sbjct 943 GTGGCAGTGATTTGTGATATACACAGATTCAAACCGACCAAGACCGGCCTCTACAAAACA 1002
Query 982 GCTTACATTATTGGAGAAGATAGATACTTGAAAGAAGTGGATCTTGGAGAA 1032
|||| ||| ||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1003 GCTTGCATCATTGGGGAGGATGGATACTTGAAAGAAGTGGATCTTGGAGAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5