BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19890.1 Length=1233 Score E Sequences producing significant alignments: (Bits) Value Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1 665 0.0 Ahg929891 jgi|Araly1|929891|scaffold_302348.1 152 6e-36 Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 69.4 6e-11 > Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1 Length=933 Score = 665 bits (360), Expect = 0.0 Identities = 442/481 (92%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 1 ATGACTATGATCTCTGATCTTTCGAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCCG 60 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1 ATGACGATGATGTCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCTG 60 Query 61 ATAACTTCTCTTGGAGCCGTGAGATCCACTCACAAACAATGGAACGCCTTATCCAAAGGT 120 ||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct 61 ATAACTTCTCTAGGAGCAGTGAGATCCACTCGCAAACAATGGAACGCCTCATCCAAAGAC 120 Query 121 CGGCTGTTGTATAAAGCGGAAGCGAA-GGATCAGTTTCTAG-GGTTCATGGTGATGGATC 178 |||||||||| |||||| ||| | || ||| |||||||| | |||||||||||||||||| Sbjct 121 CGGCTGTTGTGTAAAGCAGAA-CCAAGGGAGCAGTTTCT-GAGGTTCATGGTGATGGATC 178 Query 179 ATAGGTTT-TTATCAATGATATTCCATCTCAATGGAATTCTAAAAGGAGACGGTGAAGGC 237 |||||||| || ||||||| |||| ||||| | ||||| || |||||||||||||||| | Sbjct 179 ATAGGTTTCTT-TCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGGTGAAGTC 237 Query 238 TTTGATCGTCCATCTATCAGGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTTGTTCGTCCATCTATCAAGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297 Query 298 GTGTTTCAATGCGATGGTTTAGTGTTGTGCGTTC-CAAGTGACAACTCTAGTGTTGTGGT 356 |||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| | ||||| Sbjct 298 GTGTTTCATTGCGATGGTTTAGTGTTGTGCGT-CACAAATGACAACTCAAGTCTCGTGGT 356 Query 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAGCAAGAGAACCTCACGACGAATC 416 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAACAAGAGAACCTCACGACGAATC 416 Query 417 AGACATGTTTGCTCTCGGTTACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AGACATGTTTGCTCTAGGATACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476 Query 477 T 477 | Sbjct 477 T 477 Score = 584 bits (316), Expect = 5e-166 Identities = 411/456 (90%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 786 CGAGATGGCCATATGGGTAACCACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 845 |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 480 CGAGATGGCCATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 539 Query 846 GTTTAAAGTTGATATGAAACCACTCGTTAGGTTTGGCTTTCAACAATGTAAAGATGAAGC 905 |||||||||||||||| |||||||| |||||||||| |||||| | |||| ||||||||| Sbjct 540 GTTTAAAGTTGATATGGAACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC 599 Query 906 TGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATCTAGATA-AAA 964 |||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| Sbjct 600 TGGCAGTTTTTTTATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATTTAGACAGAAA 659 Query 965 AACGTGGTAAAAGGAATAACAAGACACGTTGTTACCACACAGCTTACATTATTGGAGAGA 1024 | | || |||||||| || |||| ||||||||||||||| ||||| || |||||| || Sbjct 660 ATC-TGATAAAAGGACCAAGAAGAAACGTTGTTACCACACGGCTTATATCGTTGGAGTGA 718 Query 1025 AGGGATACTTGAAAAAAGAGGTTCTTGGAGAAGCTGTGGAGGTCCGAAAAGACGTGTATC 1084 |||||||||||| ||||| ||||||||||||||||||||||||| || ||| |||||||| Sbjct 719 AGGGATACTTGAGAAAAGTGGTTCTTGGAGAAGCTGTGGAGGTCAGAGAAGGCGTGTATC 778 Query 1085 GGAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 1144 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GTAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 838 Query 1145 AAGAGGAAGAGGAAGAT-AAG-T--G--CAAATCAATCAAAATGGTGGACACAAAAAGGC 1198 |||||||||||||||| ||| | | |||||||| ||||||||||||| ||||| || Sbjct 839 AAGAGGAAGAGGAAGAGGAAGATATGTGCAAATCAACCAAAATGGTGGACGCAAAAGGGA 898 Query 1199 AACG-TAAGAAGAGGAAGAGGAAGAGCAAAAGGTAA 1233 || | |||||||||||||||||||||||||| |||| Sbjct 899 AA-GATAAGAAGAGGAAGAGGAAGAGCAAAACGTAA 933 > Ahg929891 jgi|Araly1|929891|scaffold_302348.1 Length=1220 Score = 152 bits (82), Expect = 6e-36 Identities = 244/320 (76%), Gaps = 19/320 (6%) Strand=Plus/Plus Query 649 CTTTGTTTTAACTTCACAACGGAGAAG-TTTGAAAATTTTATTGCTATGCCGTTTAAGTA 707 ||||||||| | || || |||||| || |||| | | | | || || | |||||| || | Sbjct 706 CTTTGTTTTGATTTTACGACGGAG-AGCTTTGGACAGTATCTTCCTCTACCGTTTGAGCA 764 Query 708 TCATA-GGAA-ATACGTTGGAACACTTTCTTGTGTTGGAAATGA-A-AAACTAGCGGC-T 762 | ||| ||| |||| ||| || || |||| |||| ||| || | ||||| ||||| | Sbjct 765 TTATATTGAAGATAC--TGGGACTCTATCTTATGTT--AAAGGAGAGAAACTCGCGGCGT 820 Query 763 CTATATCAGCGC-TGGGATACAGGCGAGATGGCCATATGGGTAACCACTAAGATTGAGTC 821 |||||||| | || | |||| ||| ||| |||||||| || | || ||||||| | Sbjct 821 -TATATCAGAACATGAG-TACATATGAGTTGGAGATATGGGTTACAAGTATGATTGAG-C 877 Query 822 C-AATGAGGTGTTGTGGAGCAACTTGTTTAAAGTTGATATGAAACCACTCGTTAGGTTTG 880 | |||| ||||| |||||| |||||||||||||||||||||||||||| | | |||||| Sbjct 878 CTAATGTGGTGTCGTGGAGAAACTTGTTTAAAGTTGATATGAAACCACACACT-GGTTTG 936 Query 881 GCTTTCAACAATGTAAAGATGAAGCTGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCG 940 | ||| || | | | | |||| |||| || || ||||| ||||||||||||||| ||| Sbjct 937 GGTTTT--CAGTTTGAGGTTGAATCTGGAAGCTTCTTCATCGACGAAGAGAAGAAAGTCG 994 Query 941 CGGTGGTTTTTAATCTAGAT 960 | || |||||| |||||||| Sbjct 995 CAGTCGTTTTTGATCTAGAT 1014 > Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 Length=1035 Score = 69.4 bits (37), Expect = 6e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1094 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAA 1136 ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 977 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGTGAAAATCAA 1019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46052483736 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5