BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19890.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1 665 0.0
Ahg929891 jgi|Araly1|929891|scaffold_302348.1 152 6e-36
Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 69.4 6e-11
> Ahg479506 jgi|Araly1|479506|fgenesh2_kg.3__2207__AT3G19890.1
Length=933
Score = 665 bits (360), Expect = 0.0
Identities = 442/481 (92%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 1 ATGACTATGATCTCTGATCTTTCGAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCCG 60
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGACGATGATGTCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCTG 60
Query 61 ATAACTTCTCTTGGAGCCGTGAGATCCACTCACAAACAATGGAACGCCTTATCCAAAGGT 120
||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 ATAACTTCTCTAGGAGCAGTGAGATCCACTCGCAAACAATGGAACGCCTCATCCAAAGAC 120
Query 121 CGGCTGTTGTATAAAGCGGAAGCGAA-GGATCAGTTTCTAG-GGTTCATGGTGATGGATC 178
|||||||||| |||||| ||| | || ||| |||||||| | ||||||||||||||||||
Sbjct 121 CGGCTGTTGTGTAAAGCAGAA-CCAAGGGAGCAGTTTCT-GAGGTTCATGGTGATGGATC 178
Query 179 ATAGGTTT-TTATCAATGATATTCCATCTCAATGGAATTCTAAAAGGAGACGGTGAAGGC 237
|||||||| || ||||||| |||| ||||| | ||||| || |||||||||||||||| |
Sbjct 179 ATAGGTTTCTT-TCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGGTGAAGTC 237
Query 238 TTTGATCGTCCATCTATCAGGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGTTCGTCCATCTATCAAGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297
Query 298 GTGTTTCAATGCGATGGTTTAGTGTTGTGCGTTC-CAAGTGACAACTCTAGTGTTGTGGT 356
|||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| | |||||
Sbjct 298 GTGTTTCATTGCGATGGTTTAGTGTTGTGCGT-CACAAATGACAACTCAAGTCTCGTGGT 356
Query 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAGCAAGAGAACCTCACGACGAATC 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAACAAGAGAACCTCACGACGAATC 416
Query 417 AGACATGTTTGCTCTCGGTTACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACATGTTTGCTCTAGGATACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476
Query 477 T 477
|
Sbjct 477 T 477
Score = 584 bits (316), Expect = 5e-166
Identities = 411/456 (90%), Gaps = 10/456 (2%)
Strand=Plus/Plus
Query 786 CGAGATGGCCATATGGGTAACCACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 845
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAGATGGCCATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 539
Query 846 GTTTAAAGTTGATATGAAACCACTCGTTAGGTTTGGCTTTCAACAATGTAAAGATGAAGC 905
|||||||||||||||| |||||||| |||||||||| |||||| | |||| |||||||||
Sbjct 540 GTTTAAAGTTGATATGGAACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC 599
Query 906 TGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATCTAGATA-AAA 964
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 600 TGGCAGTTTTTTTATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATTTAGACAGAAA 659
Query 965 AACGTGGTAAAAGGAATAACAAGACACGTTGTTACCACACAGCTTACATTATTGGAGAGA 1024
| | || |||||||| || |||| ||||||||||||||| ||||| || |||||| ||
Sbjct 660 ATC-TGATAAAAGGACCAAGAAGAAACGTTGTTACCACACGGCTTATATCGTTGGAGTGA 718
Query 1025 AGGGATACTTGAAAAAAGAGGTTCTTGGAGAAGCTGTGGAGGTCCGAAAAGACGTGTATC 1084
|||||||||||| ||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 719 AGGGATACTTGAGAAAAGTGGTTCTTGGAGAAGCTGTGGAGGTCAGAGAAGGCGTGTATC 778
Query 1085 GGAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 1144
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 838
Query 1145 AAGAGGAAGAGGAAGAT-AAG-T--G--CAAATCAATCAAAATGGTGGACACAAAAAGGC 1198
|||||||||||||||| ||| | | |||||||| ||||||||||||| ||||| ||
Sbjct 839 AAGAGGAAGAGGAAGAGGAAGATATGTGCAAATCAACCAAAATGGTGGACGCAAAAGGGA 898
Query 1199 AACG-TAAGAAGAGGAAGAGGAAGAGCAAAAGGTAA 1233
|| | |||||||||||||||||||||||||| ||||
Sbjct 899 AA-GATAAGAAGAGGAAGAGGAAGAGCAAAACGTAA 933
> Ahg929891 jgi|Araly1|929891|scaffold_302348.1
Length=1220
Score = 152 bits (82), Expect = 6e-36
Identities = 244/320 (76%), Gaps = 19/320 (6%)
Strand=Plus/Plus
Query 649 CTTTGTTTTAACTTCACAACGGAGAAG-TTTGAAAATTTTATTGCTATGCCGTTTAAGTA 707
||||||||| | || || |||||| || |||| | | | | || || | |||||| || |
Sbjct 706 CTTTGTTTTGATTTTACGACGGAG-AGCTTTGGACAGTATCTTCCTCTACCGTTTGAGCA 764
Query 708 TCATA-GGAA-ATACGTTGGAACACTTTCTTGTGTTGGAAATGA-A-AAACTAGCGGC-T 762
| ||| ||| |||| ||| || || |||| |||| ||| || | ||||| ||||| |
Sbjct 765 TTATATTGAAGATAC--TGGGACTCTATCTTATGTT--AAAGGAGAGAAACTCGCGGCGT 820
Query 763 CTATATCAGCGC-TGGGATACAGGCGAGATGGCCATATGGGTAACCACTAAGATTGAGTC 821
|||||||| | || | |||| ||| ||| |||||||| || | || ||||||| |
Sbjct 821 -TATATCAGAACATGAG-TACATATGAGTTGGAGATATGGGTTACAAGTATGATTGAG-C 877
Query 822 C-AATGAGGTGTTGTGGAGCAACTTGTTTAAAGTTGATATGAAACCACTCGTTAGGTTTG 880
| |||| ||||| |||||| |||||||||||||||||||||||||||| | | ||||||
Sbjct 878 CTAATGTGGTGTCGTGGAGAAACTTGTTTAAAGTTGATATGAAACCACACACT-GGTTTG 936
Query 881 GCTTTCAACAATGTAAAGATGAAGCTGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCG 940
| ||| || | | | | |||| |||| || || ||||| ||||||||||||||| |||
Sbjct 937 GGTTTT--CAGTTTGAGGTTGAATCTGGAAGCTTCTTCATCGACGAAGAGAAGAAAGTCG 994
Query 941 CGGTGGTTTTTAATCTAGAT 960
| || |||||| ||||||||
Sbjct 995 CAGTCGTTTTTGATCTAGAT 1014
> Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1
Length=1035
Score = 69.4 bits (37), Expect = 6e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1094 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAA 1136
||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 977 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGTGAAAATCAA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5