BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19900.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479508 jgi|Araly1|479508|fgenesh2_kg.3__2209__AT3G19900.1 1533 0.0
> Ahg479508 jgi|Araly1|479508|fgenesh2_kg.3__2209__AT3G19900.1
Length=1039
Score = 1533 bits (830), Expect = 0.0
Identities = 946/1002 (94%), Gaps = 8/1002 (1%)
Strand=Plus/Plus
Query 58 ATATCTCTTTGTCCCCCATCTATTAATCTCCTCCTCCGCATCGTCGCCGTGCACTTCCCC 117
||||||||| |||| || ||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 41 ATATCTCTTAGTCCTCCTTCTCTTAATCTCCTCCTCCGCATCGCCGCCGTGCTCTTCCCC 100
Query 118 ACCTCTTCCGGCGGATATGATGAGCATTGTATCAAGTCATCATCACTGTCAACAATCTGT 177
| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 101 AGCTCTTGCGGCGGATATGATGAGCATTGTCTCAAGTCATCATCACTGTCAACCATCGGT 160
Query 178 TATACACGAACGTAGCGGTATAGGAACAATATCTAAGGTTTCTTGTTCGAGATATTGCGG 237
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 161 TATACACGAACGTTGCGGTATAGGAACAATTTCTAAGGTTTCTTGTTCGAGATATTGCGG 220
Query 238 TCCGTGTTTCTCTGGACGACTGGCTTTCTCTCATAGCCTCTGCTTGAAG---ACTACTTA 294
|||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||
Sbjct 221 TCCGTGTTTCTCTGGAAGACTTGCTTTCTCTCATAGCCTTTGCTTGAAGACTACTACTTG 280
Query 295 TGGGAAAACTGATAGGAGAAAGTTTTCAAGAATTTGCAGTATTGTGGATGATGAGGGGAA 354
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 281 TGGGAAAACTGCTAGGAGAAGGTTTTCAAGGATTTGCAGTATTGTGGATGATGAGATGAA 340
Query 355 TCTAGATAATTCGGATGACGAGGAAAAGGAATCACTCGATGATAAAACTAAAAGGCAAGC 414
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 341 TCCAGATAATTCGGATGACGAGGCAAAGGAATCACTCGATGATAAAACTAAAAGGCAAGC 400
Query 415 GAATGATATGAATCGGGCTAATCTTGAAAGAATGGTTGGGTCAGATGATTCTGCATTTAA 474
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GAATGATATGAATCGGGCAAATCTTGAAAGAATGGTTGGGTCAGATGATTCTGCATTTAA 460
Query 475 CGGCTTAGATCTTGCAACCCTCATCAGACAGAAGTATGGAAAATCTTATGATGTTCAACT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CGGCTTAGATCTTGCAACCCTCATCAGACAGAAGTATGGAAAATCTTATGATGTTCAACT 520
Query 535 CATCAAGAAGGAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAG 594
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 521 CATCAAGAAGGAGTTCATGGGGCGGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAG 580
Query 595 AGAACAGAGGTCTTTTCCTCTAACCGAAGAAGAATATATACTTAGACTTGACGATGTAGC 654
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 581 AGAACAGAGGTCTTTTCCTCTAACCGAAGAAGAATATATTCTGAGACTTGACGATGTAGC 640
Query 655 CAACATGTTGAAATGCTGGGGAGCAGTCTCACATATCCGTAGCAGCCTAGCAAAGTCGAA 714
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 641 CAACATGTTGAAATGCTGGGGAGCAGTCTCCCATATCCGTAACAGCCTAGCAAAGTCGAA 700
Query 715 GGAGCGACCTCGGATAGGGAAGGCTGTCAGCATTTTCATAGACATGGATTCGACAGGGGG 774
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GGAGCGACCCCGGATAGGGAAGGCTGTCAGCATTTTCATAGACATGGATTCGACAGGGGG 760
Query 775 AAGAGCAAATGAATGGATTTACAAGTAAAAATCGACCGGTTTGCAGCTGCTAAACCAAGA 834
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 761 ACGAGCAAACGAATGGATTTACAAGTAAAAATCGACCGGTTTACAGCTGCTAAACCAAGA 820
Query 835 AATCAAAAGGTTTTGTCTCTACGTTTATCGTCATCAATTCATTTTGAAGGCTCTTCAGTG 894
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 821 AAGCAAAAGGTTTTGTCTCTATGTTTATCGTCATCAATTCATTTTGAAGGCTCTTCTGTG 880
Query 895 ATGGTTGCCT-GCAGAAACCGAGGTTTTTGCTATATTTGATGTCCAAA-TCAGGTAGTAT 952
||||| | | |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 881 ATGGT-GATTTGCAGAAACAGAGGTTTTTGCTATATTTGATGTCCAAAATCAGGTAGTAT 939
Query 953 ATATGTACATGTGTGTATTAAGTAGACACAAATCTTTACTTGAACTCTCTGTGTAAAATA 1012
|||||||||||||| | ||| |||||||||||| ||||| |||||||||| |||||||||
Sbjct 940 ATATGTACATGTGTAT-TTA-GTAGACACAAATTTTTACATGAACTCTCTTTGTAAAATA 997
Query 1013 TCTCCATGTGTTGAAATTCAATCATCTTTGTGAATCTTCCTC 1054
|||||||||||||||||| ||||||| ||||||||||||||
Sbjct 998 TCTCCATGTGTTGAAATTGTATCATCTATGTGAATCTTCCTC 1039
Score = 73.1 bits (39), Expect = 4e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 AGTTTTAAGAGTTTTATTTTTGTTTCCTCCTTCACCGTTCAT 42
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGTTTTAAGAGTTATATTTTTGTTTCCTCCTTCACCGTTCAT 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5