BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19910.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479509 jgi|Araly1|479509|fgenesh2_kg.3__2210__AT3G19910.1 2121 0.0
> Ahg479509 jgi|Araly1|479509|fgenesh2_kg.3__2210__AT3G19910.1
Length=1375
Score = 2121 bits (1148), Expect = 0.0
Identities = 1310/1383 (95%), Gaps = 31/1383 (2%)
Strand=Plus/Plus
Query 1 GATTTCGAAGAAAATGTTGCATAGTTTTCAAAATTTGAAAATCTCAGCTAAAGAGAGAAA 60
||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 1 GATTTCGAAGAAAATTTTGCATAGTTTTCAAAATTTG-AAA--TCAGCT-AAGAGAGAAA 56
Query 61 GAGAAGCACCATTTTTCTTTC-TCGTCGTGTCATCGTTTTCTCAGATTCCTGAATAATCA 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 57 GAGAAGCACCATTTTTCTTTCTTCGTCGTGTCATCGTTTTCTCAGATTCCTGAAT-A--A 113
Query 120 TTCCCTTCCGATTCCAAAATCCCCAAACCTCATCCACTCCTCCATCTCCCGGATTCGGAT 179
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 114 TTCCCTTCCGATACCAAAATCCCCAAACCTCATCGACTCCACCATCTCCCGGATTC-G-- 170
Query 180 TCCCAGAATCATGCCCATGGAGAACGACAATGGCCCACACGTTGGCAACGTCGTCGTCAC 239
| || | |||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 171 -----G-AT--T---CATGGAGAACAACAATGG--C-CACGTTGGCAACGTCGTCGTCAC 216
Query 240 CGCTGAGCAAGCGACCAAGATTAACGAGACTGATGGACGGTTGCCGGAGAATCGGCAGAC 299
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CGCCGAGCAAGCCACCAAGATTAACGAGACTGATGGACGGTTGCCGGAGAATCGGCAGAC 276
Query 300 CGGTGTTGTCTCTGACACCGGAAGTGGTAGCGAGAGAGGAGAGCAAGGGGTTGGAGAGTC 359
||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 277 CGGTGTTGTATCAGACACCGGAAGTGGTAGCGAGAGAGGAGAGCAAGGGGATGGAGAGAC 336
Query 360 GGCAGTTG-CTGTGGCGGTGCCGGTGGAGGAGAGCGGATCGATTTCGGTGGGAGAGCTAC 418
||||| || | ||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 337 GGCAG-TGCCGGTGCCGGTGTCGGTGGAGGAGAGCGGATCGATTTTGGTGGGAGAGCTAC 395
Query 419 CTGCTCCCCGATCTTCCTCTGCTAGAGTTCCGTTTACTAATCTAAGCCAAATTGATGCGG 478
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 396 CTGCTCCCCGATCTTCCTCCGCTAGAGTTCCGTTCACTAATCTAAGCCAAATTGATGCGG 455
Query 479 ATCTTGCTCTTGCTCGCACACTCCAAGAACAGGAGCGGGCGTATATGATGTTGACCATGA 538
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 456 ATCTTGCTCTTGCTCGCACACTCCAAGAACAGGAGCGGGCGTATATGATGCTGACCATGA 515
Query 539 ATAGTGAAATCAGTGACTATGGGAGCTGGGAAACTGGAAGCTATGTATACgatgaggatg 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 ACAGTGAAATCAGTGACTATGGGAGCTGGGAAACTGGAAGCTATGTATACGATGAGGATG 575
Query 599 agtttgatgaccccgagaatgaggatgaggatgatgatgaagatgaatatgaaacagatg 658
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 576 AGTTTGATGACCCCGAGAATGAGGATGAGGATGACGATGAAGACGAATATGAAACAGATG 635
Query 659 atgatcctcaggaagatgggcttgatgTCAATGTGCACGCCAATGAAGATGATCAAGAAG 718
|||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||
Sbjct 636 ATGATCCTCAGGAAGATGCGCCCGATGTCGATGTGCACGCTAATGAAGATGATCAAGAAG 695
Query 719 ATGACGGTAACTCTGACATTGAAGAAGTTGCTTATACAGATGATGAGGCCTATGCTAGAG 778
|||||| ||||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 696 GTGACGGCAACTCTGACATCGAAGAAGTTGCTTATTCCGACGATGAGGCCTATGCTAGAG 755
Query 779 CTCTTCAAGAAGCTGAAGAAAGGGATATGGCTGCTAGATTGTCTGCCTTATCTGGGTTAG 838
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 756 CTCTTCAAGAAGCTGAAGAAAGGGATATGGCAGCTAGATTGTCTGCCTTATCTGGGTTAG 815
Query 839 CAAACCGGGTGGTTGAAGATCTAGAGGATGAGAGTCATACTTCTCAGGATGCCTGGGATG 898
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 816 CAAATCGGGTGGTTGAAGATCTAGAGGATGAAAGTCATACTTCTCAGGATGCCTGGGATG 875
Query 899 AGATGGATCCTGATGAGCTTTCATATGAGGAGTTGCTTGCACTTGGCGACATTGTGGGAA 958
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 876 AGATGGATCCTGATGAGCTTTCTTATGAGGAGTTGCTTGCACTTGGCGACATTGTGGGAA 935
Query 959 CCGAAAGTAGAGGATTGTCTGCTGATACAATTGCATCTTTGCCTTCAAAAAGATATAAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 CCGAAAGTAGAGGATTGTCTGCTGATACAATTGCATCTTTGCCTTCAAAAAGATATAAAG 995
Query 1019 AAGGAGACAATCAGAACGGAACCAATGAGTCATGTGTTATATGTCGTTTAGACTATGAGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AAGGAGACAATCAGAACGGAACCAATGAGTCATGTGTTATATGTCGTTTAGACTATGAGG 1055
Query 1079 ATGACGAAGACCTGATACTGCTCCCATGCAAACATTCTTACCACTCGGAGTGCATAAACA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ATGACGAAGACCTGATACTGCTCCCATGCAAACATTCTTACCACTCGGAGTGCATAAACA 1115
Query 1139 ACTGGTTGAAGATAAACAAGGTTTGCCCCGTATGCAGTGCAGAAGTTTCAACTTCGACCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1116 ACTGGTTGAAGATAAACAAGGTTTGCCCCGTATGCAGTGCAGAAGTTTCAACTTCCACCT 1175
Query 1199 CTGGACAAAGCTGATGAG-GCAAAGGAAGAAAGATTCAGAAAGAATCATAAGCTAAGAAC 1257
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1176 CTGGACAAGGCTGATGAGAGCAAAGCAAGAAAGATTCAGAAAGAATCATAAGCTAAGAAC 1235
Query 1258 TTCAAAACCTTAGCTGCCTGTTTGTACACTTCTTATAAACAAAATAACATCATCAGATTT 1317
|||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1236 TTCAAAACCTTAGCTGTCTGTTTGTACACTTTTTATAAACAAAA-A-CATCATCAGATTT 1293
Query 1318 CCTTGGATCCTTT-AAAAAATCTCAAAGATTGGAACATTCTCAAGCGTTTTTAGTTTTTG 1376
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1294 CCTTGGATCCTTTGAAAAAATCTCAAAGATTGGAACATTCTCGAGCGTTTTTAGTTTTTG 1353
Query 1377 CAT 1379
|||
Sbjct 1354 CAT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5