BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19920.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479510 jgi|Araly1|479510|fgenesh2_kg.3__2211__AT3G19920.1 2089 0.0
> Ahg479510 jgi|Araly1|479510|fgenesh2_kg.3__2211__AT3G19920.1
Length=1380
Score = 2089 bits (1131), Expect = 0.0
Identities = 1302/1383 (94%), Gaps = 17/1383 (1%)
Strand=Plus/Plus
Query 17 ACAACAAAAAGAGAGAACAATGTCGTCGTCGAGGGAGCTACAATACTTGGAGTACACATA 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAACAAAAAGAGAGAACAATGTCGTCGTCGAGGGAGCTACAATACTTGGAGTACACATA 60
Query 77 CAGAAACAACCGTCCCACGACGGGTCTCCTCAACTCCATCTTCATGACCACCGTCAACAC 136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGAACAACCGTCCCACGACGGGTCTCCTCAACTCCATCTTCATGACCACCGTCAACAC 120
Query 137 GGCCGCTCGTTCTCTCGTCTCCGTCGCTTCCACCGCCTCTACACCAGAGATTCCTTCTAG 196
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 121 GGCCGCTCGTTCTCTCGTCTCCGTCGCCTCCACCGCCTCCACACCGGAGATTCCTTCTAG 180
Query 197 GCGATGGTCGGCTTCGGACCACCTCAGTTTCGCTTCGGGTCTTCTTACCACGGCTGCGGA 256
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GCGGTGGTCGGCTTCGGACCACCTCAGTTTCGCTTCGGGTCTTCTTACCACGGCGGCGGA 240
Query 257 GAACGCGTTGGTCCCGGCTAAGGCTTCCTCGTCGTCGTCCACGTCATCAACTGCGTTGGT 316
||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct 241 GAACGCGTTGGTCCCCGCTAAGGCTTCCCCGTCGTCGTTCACGTCATCAACGGCGTTGGT 300
Query 317 GAAGTATTCAGGGTCGTCAGATTTGGGTATGATGATTTGCGACGGCGTTGATGAGCCTTC 376
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTATTCAGGGTCGTCGGATTTGGGTATGATGATTTGCGACGGCGTTGATGAGCCTTC 360
Query 377 TGTTAACTCTCTCGGTAGAGCTCTTTGTCACGCATTAGCGCTTATGAACGAGATTCCAGT 436
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 361 CGTTAACTCTCTCGGTAGAGCACTTTGTCACGCATTAGCGCTCATGAACGAGATTCCAGT 420
Query 437 AACCTCAAGAAAATATCAATTTGCCATGGGAATGGCTGAGAAGATCATGGAAGACAACGC 496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCTCAAGAAAATACCAATTTGCCATGGGAATGGCTGAGAAGATCATGGAAGACAACGC 480
Query 497 TCAGAGCGGCCACGTGGATTTACTAGACGTCAACAGAGCGGCCCTAGCTTCCTCCTTTGC 556
|||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 481 CCAGAGCGGCCACGTCGATTTACTCGACGTCAATAGAGCGGCCCTCGCTTCCTCCTTTGC 540
Query 557 GCGCACTACTGCGCGATTGCAGGACTGCTTGAAACGCTCTCGAACCGCTGACGAGCCCTT 616
||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 541 ACGCACCACTGCGCGTTTGCAGGACTGCTTGAAACGATCTCGAACCGCAGACGAGCCCTT 600
Query 617 CGGTGGTTTGCCTTTGCGTGTGGTCAGCGCCCTCCCTCTGGGCGGCTACGTTGCCTCCTA 676
|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 601 CGGTGGTTTGCCGCTGCGTGTGGTCAGCGCCCTCCCTCTAGGTGGCTACGTTGCCTCCTA 660
Query 677 CGTGAGAGGGTTAAGTGCATGTATCAACACCGTCAGGTCCTTAGCAGACATGACTGGGAA 736
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 CGTGAGAGGGTTAACCGCATGTATCAACACGGTCAGGTCCTTAGCAGACATGACTGGGAA 720
Query 737 CTTGTTATCGCAGACTAGGAGGAGAGAGTCTGCGGTGGTGAGAGCGGGTGGTATCCAAGA 796
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 721 CTTGTTATCGCAGAGTAGGAGGAGAGAGTCTGCCGTGGTGAGAGCGGGTGGTATCCTAGA 780
Query 797 AAATGAGGCTGAACTAGCGGTCGAGAAGCTTGCGGAGGAGCTGCTGTGGATGACAGAGAA 856
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 AAATGAGGCTGAACTAGCAGTCGAGAAGCTTGCGGAGGAGCTGTTGTGGATGACAGAGAA 840
Query 857 GCTTAGGCGTTATGGTGCGGTGGCAGAAGGGATTAAGCGGTGGAGCTACGCTTCCGGTTT 916
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTTAGGCGTTACGGTGCGGTGGCAGAAGGGATTAAGCGGTGGAGCTACGCTTCCGGTTT 900
Query 917 AGCTTCCTTGTCTCTCACGGCTGCTCCCAGGGTTCAAGGCCTCATGGTTAAGATTTCGGC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGCTTCCTTGTCTCTCACGGCTGCTCCCAGGGTTCAAGGCCTCATGGTTAAGATTTCGGC 960
Query 977 GCTCTTAATTGGAGAGTTAGCAAGAGACAGCACACAAGTTCCAGGACAAGTGACATTCAG 1036
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 961 GCTCTTAATTGGAGAGTTAGCAAGAGACAGCACACAAGTCCCGGGACAAGTGACATTTAG 1020
Query 1037 GCTCCTTGCAAACTGGCTCCCACTGTTTAGTCACGCAAGGAACGGGCTTGCGTTTCCCGT 1096
|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 1021 GCTCCTTGCAAACTGGCTACCATTGTTTAGTCACGCAAGGAACGGGCTAGCGTTCCCCGT 1080
Query 1097 ACTGACGGGTTATGAGAGAGTTGAGGTGGAACGAGCCATAGACAAAGCCATCTCGACTTT 1156
|||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1081 GCTGACGGGATATGAGAGGGTTGAGGTGGAACGAGCAATAGACAAAGCAATCTCGACTTT 1140
Query 1157 ACCTGCA-TTGGACCAAGAAATCTTACTCACTAACTGGCTCCAAGATTTCTCAGTCTCGG 1215
||||| ||| ||||||||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1141 GCCTGCGCTTG-ACCAAGAAATCCTACTTACAAACTGGCTGCAAGATTTCTCAGTCTCGG 1199
Query 1216 CCTCCGAGTGGCCCAATCTTCAGCCAGCATATGACCGTTGGTGCCACTCCACTCGCCAAC 1275
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATCTGAGTGGCCCAATCTCCAGCCAGCATATGACCGTTGGTGCCACTCCACTCGCCAAC 1259
Query 1276 TTTTCATGTAGACGACCAATAC--------CAT-A-G-TCATGTTCCAAAGAGAAAACAT 1324
|||||||||||||||||||||| ||| | | ||||||||||||||||| |||
Sbjct 1260 TTTTCATGTAGACGACCAATACAATTTAGTCATGATGGTCATGTTCCAAAGAGAA--CAT 1317
Query 1325 GAAAAT--TTGTTGTACTTTTCTTTGCTACGAGTTTTGATATTACCTTCTGTGTCCACAT 1382
| | || |||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1318 GGATATGCTTGTCGTACTTTTCTTTGCTACGAGTTTTGATAATACCTTCTGTGTCCACAC 1377
Query 1383 ATT 1385
|||
Sbjct 1378 ATT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5