BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19940.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318745 jgi|Araly1|318745|fgenesh1_pm.C_scaffold_3001761 2507 0.0
Ahg314430 jgi|Araly1|314430|fgenesh1_pm.C_scaffold_1003210 1277 0.0
Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202 372 5e-102
> Ahg318745 jgi|Araly1|318745|fgenesh1_pm.C_scaffold_3001761
Length=1548
Score = 2507 bits (1357), Expect = 0.0
Identities = 1485/1548 (96%), Gaps = 3/1548 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGGAGCTTTTGTATCAGAAGGAGGAGGTGGTGGAAGAAGTTATGAAGGAGGA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGAGGAGCTTTTGTATTAGAAGGAGGAGGTGGTGGAAGAAGTTATGAAGGAGGA 60
Query 61 GTCACCGCATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTGGT 120
||||| |||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct 61 GTCACAGCATTCGTTATCATTACATGTATTGTGGCCGCCATGGGAGGTCTCCTCTTTGGT 120
Query 121 TATGACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCTTC 180
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 121 TACGACCTTGGAATCTCAGGAGGAGTTACATCAATGGAGGAGTTTCTTACCAAGTTCTTC 180
Query 181 CCTCAAGTAGAGAGCCAGATGAAAAAGGCGAAGCACGACACGGCTTACTGTAAATTTGAT 240
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 181 CCTCAAGTAGAGAGCCAGATGCAAAAGGCGAAGCACGACACGGCTTATTGCAAATTCGAT 240
Query 241 AACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTCGCAGCTCTTGTAGCTTCCTTT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTTGCAGCTCTTGTAGCTTCCTTT 300
Query 301 ATGGCTTCAGTTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTGGTGGACTT 360
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATGGCTTCGGTTATAACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATCGGTGGACTT 360
Query 361 GCTTTCCTCATCGGTGCACTTTTTAACGCATTTGCCGTTAATGTTTCAATGCTCATCATC 420
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 361 GCTTTCCTCATCGGTGCACTTTTCAACGCATTTGCCGTTAATGTTGCAATGCTCATAATC 420
Query 421 GGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTGTACCTA 480
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGTAGACTTTTGCTCGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTATACCTA 480
Query 481 TCTGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTTCAGATGGCTATA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTTCAGATGGCTATA 540
Query 541 ACCATTGGAATCCTAGTGGCGAATCTGATTAACTATGGAACATCAAAGATGGCTCAACAT 600
|| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ACGATTGGAATCTTGGTGGCTAATCTGATAAACTATGGAACATCAAAGATGGCTCAACAT 600
Query 601 GGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTTATGGTGATTGGATCA 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTAATGGTGATTGGATCA 660
Query 661 TTTATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGGAAGCAAAA 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGGAAGCAAAA 720
Query 721 CAAATGTTGAAGAAGATACGTGGAGCTGACAATGTTGATCATGAGTTTCAAGATCTCATT 780
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 721 CAGATGTTGAAGAAGATACGTGGAGCTGACAACGTTGACCATGAGTTTCAAGATCTCATA 780
Query 781 GATGCTGTTGAAGCTGCCAAAAAGGTGGAAAATCCATGGAAGAACATCATGGAGAGTAAA 840
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 781 GATGCTGTTGAAGCTGCCAAAAAGGTGGAATATCCATGGAAGAACATCATGGAGAGTAGA 840
Query 841 TATAGACCAGCTTTAATCTTCTGCTCGGCCATTCCCTTTTTCCAACAGATCACTGGAATC 900
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TACAGACCAGCTTTAATCTTCTGCTCGGCGATTCCCTTTTTCCAACAGATCACTGGAATC 900
Query 901 AATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGATGATGCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 AATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGACGATGCT 960
Query 961 GCTCTTATGTCTGCTGTTATAACCGGTGTTGTCAACATGCTTTCAACCTTTGTCTCAATT 1020
||||||||||| || ||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 961 GCTCTTATGTCCGCCGTTATAACCGGTGTTGTTAACATGCTCTCAACCTTTGTCTCTATT 1020
Query 1021 TACGCGGTTGATAGATATGGTAGAAGGTTGCTTTTCCTCGAAGGTGGCATTCAAATGTTC 1080
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TACGCGGTTGATAGATATGGAAGGAGGTTGCTTTTCCTCGAAGGTGGCATTCAAATGTTC 1080
Query 1081 ATTTGTCAGCTTCTTGTTGGTTCTTTCATCGGTGCAAGATTCGGAACCTCAGGAACCGGA 1140
|||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1081 ATTTGTCAGCTTCTCGTTGGTTCTTTCATCGGTGCAAGATTTGGAACCACAGGAACCGGA 1140
Query 1141 ACATTGACGCCAGCAACAGCAGACTGGATTCTTGCTTTCATATGTGTGTACGTTGCAGGA 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACCTTGACGCCAGCAACAGCAGACTGGATTCTTGCTTTCATATGTGTGTACGTTGCAGGA 1200
Query 1201 TTTGCATGGTCATGGGGTCCATTGGGATGGTTGGTACCGAGTGAGATATGTCCATTGGAA 1260
||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1201 TTTGCATGGTCATGGGGCCCATTGGGATGGTTGGTACCGAGTGAAATCTGTCCATTGGAG 1260
Query 1261 ATTAGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTTCTCATT 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1261 ATTCGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTCCTCATT 1320
Query 1321 GGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGCA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGCA 1380
Query 1381 AGCATGGTTGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTGTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGCATGGTTGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTGTT 1440
Query 1441 CCTATTGAAGAGATGGGAAGAGTTTGGAAGCAACATTGGTTCTGGAAAAAGTATATCCCA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCTATTGAAGAGATGGGAAGAGTTTGGAAGCAACATTGGTTCTGGAAAAAGTATATCCCA 1500
Query 1501 GAAGATGCTATTATTGGTGGACATGATGAC-A-A-CAATACCAATTAA 1545
|| ||||| |||||||||||||||||||| | | |||||||||||||
Sbjct 1501 GATGATGCAATTATTGGTGGACATGATGATGATAACAATACCAATTAA 1548
> Ahg314430 jgi|Araly1|314430|fgenesh1_pm.C_scaffold_1003210
Length=1554
Score = 1277 bits (691), Expect = 0.0
Identities = 1273/1550 (82%), Gaps = 55/1550 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGGAGCTTTTGTATCAGAAGGAGGAGGTGGTGGAAGA-AGTTATGAAGGAGG 59
||||| |||||||| ||||||||||| || || ||||| |||| | || |||||||| ||
Sbjct 1 ATGGCTGGAGGAGCCTTTGTATCAGAGGGTGGTGGTGGAGGAA-ACAGCTATGAAGGCGG 59
Query 60 AGTCACCG-CATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTG 118
|||||||| | || || |||||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 60 AGTCACCGTC-TTTGTCATCATGACCTGTATTGTGGCCGCTATGGGAGGTCTTCTCTTTG 118
Query 119 GTTATGACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCT 178
|||||||||| |||||||||||||| || ||||| ||||| |||||||| | |||||| |
Sbjct 119 GTTATGACCTCGGAATCTCAGGAGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTT 178
Query 179 TCCCTCAAGTAGAGAGCCAGATG-AAAAAGGCGAAGCACGACACGGCTTACTGTAAATTT 237
|||| | || || || || ||| | || |||| || ||| || |||||||| |||||
Sbjct 179 TCCCGGAGGTGGATAGGCAAATGCACGAA-GCGAGGCGCGAGACTGCTTACTGCAAATTC 237
Query 238 GATAACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTCGCAGCTCTTGTAG-CTTC 296
||||||||| ||||||| ||||||||||| || ||||||||||| ||||| || | ||||
Sbjct 238 GATAACCAATTGCTCCAGTTGTTCACTTCCTCACTCTACCTCGCGGCTCTCGT-GTCTTC 296
Query 297 CTTTATGGCTTCAGTTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTGGTGG 356
|||| | ||||| | | |||| |||||| | ||||||||| |||| |||||| |||| ||
Sbjct 297 CTTTGTAGCTTCGGCTGTCACAAGGAAGTACGGACGTAAAATCTCCATGTTTGTTGGAGG 356
Query 357 ACTTGCTTTCCTCATCGGTGCACTTTTTAACGCATTTGCCGTTAATGTTTCAATGCTCAT 416
||||||||||||| ||| | || ||||||||||||||| ||||| ||||||||||
Sbjct 357 GGTTGCTTTCCTCATAGGTTCTCTATTTAACGCATTTGCCACCAATGTCGCAATGCTCAT 416
Query 417 CATCGGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTGTA 476
||| |||||| ||||||| || || |||||||||||||||||||||||||| ||||| ||
Sbjct 417 CATTGGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCTAATCAGTCTACGCCGGTTTA 476
Query 477 CCTATCTGAAATGGCTCCAGCGAAGATAAGAGGAGC-TTTAAACATCGGTTTTCAGATGG 535
|| || || |||||||| |||||||| ||||||| || |||||||| ||||| ||||
Sbjct 477 TCTCTCGGAGATGGCTCCTGCGAAGATCCGAGGAGCACTT-AACATCGGGTTTCAAATGG 535
Query 536 CTATAACCATTGGAATCCTAGTGGCGAATCTGATTAACTATGGAACATC-AAAGATGGCT 594
|||||||||| || || |||| ||||| || || |||||||||||||| || ||||||
Sbjct 536 CTATAACCATCGGGATTTTAGTTGCGAACCTAATCAACTATGGAACATCTCAA-ATGGCT 594
Query 595 CA--ACATGGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTTATGGTGA 652
| | | |||||||| || || || |||||||| |||||||| || ||||||||||| |
Sbjct 595 -AGGA-ACGGATGGAGAGTGTCCTTGGGTTTAGCCGCTGTTCCGGCAGTTGTTATGGTTA 652
Query 653 TTGGATCATTTATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGG 712
| ||||| ||| | |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 653 TCGGATCTTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAGC 712
Query 713 AAGCAAAACAAATGTTG-AAGAAGATACGTGGAGCTGACAATGTTGATCATGAGTTTCAA 771
|||| | | | |||||| || ||||| ||||||||||| || || ||| | |||||||||
Sbjct 713 AAGCGAGAGAGATGTTGCAA-AAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAA 771
Query 772 GATCTCAT-TGATGCT-GTTGAAGCTGCCAA-AAAGGTGGAAAATCCATGGAAGAACATC 828
||||| || ||||||| || || ||||| || |||| |||| || || |||||||||||
Sbjct 772 GATCT-ATGTGATGCTTGT-GAGGCTGCTAAGAAAG-TGGAGAACCCGTGGAAGAACATT 828
Query 829 ATGGAG-A-GTAAA-TATAGACCAGCT-TTAATCTTCTGCTCGGCCATTCCCTTT-TTCC 883
| | | | ||| || ||||| || || | ||||| || || ||||| ||| ||||
Sbjct 829 TTCCAACATGCAAAATACAGACCCGCGCTTGTT-TTCTGTTCTGCAATTCC-TTTCTTCC 886
Query 884 AACAGATCACTGGAATCAATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTG 943
||||||| ||||| |||||||| || ||||||||||| || |||||||| || || || |
Sbjct 887 AACAGATTACTGGTATCAATGTGATCATGTTCTACGCCCCGGTTCTCTTTAAAACACTCG 946
Query 944 GTTTTG-GTGATGATGC-T-GCTCTTATGTCTGCTGTTATAACCGGTGTTGTCAACATGC 1000
|||| | | |||||||| | |||| || || || ||||| || |||| |||||| ||
Sbjct 947 GTTTCGCG-GATGATGCCTCGCTC--ATCTCAGCCGTTATTACGGGTGCTGTCAA--TGT 1001
Query 1001 T-T-TCAACCTTTGTCTCAATTTACGCGGTTGATAGATATGGTAGAAGG-TTGCTTTTCC 1057
| | || ||| ||||||| || || |||||||| ||||| || |||||| || || ||||
Sbjct 1002 TGTCTCTACCCTTGTCTCCATCTATGCGGTTGACAGATACGGAAGAAGGATT-CTCTTCC 1060
Query 1058 TCGAAGGTGGCATTCAAATGTTCATTTGTCAGCTTC-TTGTTGGTTCTTTCATCGGT--G 1114
| ||||| ||||| |||||| ||||| | ||| | | |||||||| | || || ||| |
Sbjct 1061 TTGAAGGAGGCATCCAAATGATCATTAGCCAGAT-CGTTGTTGGTACCTTGATTGGTATG 1119
Query 1115 CAAGATTCGGAACCTCAGGAACCGGAACATTGACGCCAGCAACAGCAGACTGGATTCTTG 1174
||| || |||||| ||||| | || || || || || ||||||||||| ||||| || |
Sbjct 1120 -AAGTTT-GGAACCACAGGATCAGGGACCTTAACACCTGCAACAGCAGATTGGATCCTAG 1177
Query 1175 CTTTCATATGTGTGTACGTTGCAGGATTTGCATGGTCATGGGGTCCATTGGGATGGTTGG 1234
||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1178 CTTTCATATGTTTGTATGTTGCAGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAG 1237
Query 1235 TACCGAGTGAGATATGTCCATTGGAAATTAGACCAGCGGGACAAGCCATCAACGTCTCGG 1294
|||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1238 TACCAAGTGAGATCTGTCCATTGGAAATCAGACCAGCGGGGCAAGCCATCAACGTCTCTG 1297
Query 1295 TCAACATGTTCTTCACTTTTCTCATTGGTCAATTCTTTT-TGACAATGCTTTGTCACATG 1353
|||||||||||||||||||||||||||| ||||| ||| | || |||||||| ||||||
Sbjct 1298 TCAACATGTTCTTCACTTTTCTCATTGGACAATT-TTTCCTCACGATGCTTTGCCACATG 1356
Query 1354 AAGTTTGGTCTATTCTACTTCTTTGCAAGCATGGTTGC-GATCATGACGGTTTTCATTTA 1412
||||||||||| ||||||||||||| | | |||||||| | ||||||| || ||||| ||
Sbjct 1357 AAGTTTGGTCTCTTCTACTTCTTTGGAGGAATGGTTGCAG-TCATGACCGTCTTCATCTA 1415
Query 1413 CTTTTTGTTGCCGGAGACCAAAGGTGTTCCTATTGAAGAGATGGGAAGAGTTTGGAAGCA 1472
||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1416 CTTCTTGTTGCCGGAGACAAAAGGGGTTCCTATTGAAGAAATGGGAAGAGTATGGAAGCA 1475
Query 1473 ACATTGGTTCTGGAAAAAGT-ATATCCCAGAAGATGCTATTATTGGTGGA 1521
|||| |||||||||| || | |||||||| |||||| ||||||| |||
Sbjct 1476 ACATCCGTTCTGGAAAC-GTTACATCCCAGATGATGCTGTTATTGGAGGA 1524
> Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202
Length=1554
Score = 372 bits (201), Expect = 5e-102
Identities = 1069/1472 (73%), Gaps = 124/1472 (8%)
Strand=Plus/Plus
Query 64 ACCGCATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTGGTTAT 123
|||||||| || || || || || || || || || ||||| ||||| ||||| |||||
Sbjct 64 ACCGCATTTGTCATGATTACCTGCATTGTTGCTGCAATGGGTGGTCTACTCTTCGGTTAC 123
Query 124 GACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCTTCCCT 183
||| | || ||||||||||| || ||||||||||| |||||||| || || ||||||||
Sbjct 124 GACATCGGTATCTCAGGAGGAGTGACATCAATGGAGGAGTTTCTAACGAAATTCTTCCC- 182
Query 184 C-AAGTAG-AGAGCCAGATGAAAAAGGCGAAGCA---C--GACACGGCTTACTGTAAATT 236
| | || | | || ||| |||| |||| || | || || | ||||||||||
Sbjct 183 CGACGT-GCTTCGTCAAATGCAAAA--CGAAACAGGGCGTGAAACAGAGTACTGTAAATA 239
Query 237 TGATAACCAAATGCTCCAAT-TGTTCACTTCTTCTCTCTACCTCGCAGCTCTTG-TAGCT 294
|||||| | | || || | | |||||||| ||||| |||||||| ||| ||| | |||
Sbjct 240 TGATAATGAGCTTCT-CACTCTTTTCACTTCCTCTCTTTACCTCGCTGCT-TTGTTCGCT 297
Query 295 TCCTTT-ATGGCTTCAG-TTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTG 352
| |||| | || || | || || ||| ||| || || ||||| ||| || |
Sbjct 298 T-CTTTCCTTGCATC-GACCATTACAAGGCTTTTTGGTCGGAAGGTCTCAATGACGATCG 355
Query 353 GTGGACTTGCTTTCCTCATC-GGTGCACTTTTTAACGCATTT-GCCGTTAATGTTTC-A- 408
| || ||||||| |||| | || || ||| | |||| ||| || | || || |
Sbjct 356 GGGGTTTTGCTTTTCTCA-CTGGAGCTCTTCTCAACG-GTTTAGCTATCAA--CCTCGAG 411
Query 409 ATGCTCATCATCGGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACT 468
||| | |||||||| | | || || ||||| ||||| ||||| ||||| || ||| |
Sbjct 412 ATGTTGATCATCGGGCGGTTATTTCTCGGTGTAGGTGTCGGATTCGCTAACCAATCTGTT 471
Query 469 CCGGTGTACCTATCTGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTT 528
|| | ||||| ||||| |||||||| || ||||| ||||||||| | ||||| ||||||
Sbjct 472 CCTCTTTACCTCTCTGAGATGGCTCCTGCTAAGATCAGAGGAGCTCTCAACATTGGTTTT 531
Query 529 CAGA-TGGCTA-TAACCATTGGAATCCTAGTGGCGAATCTGAT-T-AACTATG-GAACAT 583
|| | | || | | || || || ||| ||| ||||| | | | | || || | | ||
Sbjct 532 CA-ATTAGC-AGTCACGATCGGGATCTTAGCCGCGAA-C-GTTGTCAATTACGTG-AC-C 585
Query 584 CAAAGATGGCTCAA-CA-TGGAT-GGA-GG-G-TT-TCTTTAGGTTTAGCAGCTGTTCCA 636
| || | |||||| | |||| ||| || | || ||| | |||||||| | |||||
Sbjct 586 CCAA-A--GCTCAAGAACGGGATCGGATGGAGATTATCTGTCGGTTTAGCTGGAGTTCCG 642
Query 637 G-CTGTTGTTATGGTGATTGGAT-CATTTATT-TTGCCCGATACACCAAACTCGATGCTC 693
| || || | ||| | | |||| | ||| || ||||| ||||| |||||||| || ||
Sbjct 643 GCCT-TTATGATGCTCCTCGGATGC-TTT-TTCTTGCCAGATACGCCAAACTCAATCCTT 699
Query 694 GAGA-GAGGCAAA-AATGAGGAAGCAAAACAAATGTTGAAGAAGATAC-GTGG-AGC-TG 748
|| | | || ||| || || |||| || | |||||| ||||||| | | || | | ||
Sbjct 700 GA-ACGTGG-AAACAAAGAAAAAGCTAAGGAGATGTTGCAGAAGAT-CAGAGGAACCATG 756
Query 749 ACAATGTTGATCATGAGTTTCAA-GATCTCATTG--ATGCTGT-TGAAGCTGC-CAAAAA 803
| || || ||||||||| || || || ||| | || || || || | | | || |
Sbjct 757 --GAGGTCGACCATGAGTTT-AATGAACT--TTGCAACGC-GTGTG-AG-TCCGCGAAGA 808
Query 804 G-GTGGAA-AATCCATGGAAGAACATCATGGAGAG-TAAATATAGA-C-CAGCTTTAATC 858
| || || ||||||||| |||||| ||| | || | ||| || | |||| | | |
Sbjct 809 GAGT-TAAGCATCCATGGACGAACATAATGCA-AGCTCGTTATCGACCGCAGC--TCA-C 863
Query 859 -TTCTGCT-CGGCCATTCCC-TTTTTCCAACAGATCACTGGAATCAATGTCATTATGTTC 915
||||| | | || |||| || ||||| ||| | || || ||||| ||||||||||||
Sbjct 864 GTTCTG-TACCTTCA-TCCCGTTCTTCCAGCAGCTAACCGGGATCAACGTCATTATGTTC 921
Query 916 TACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGATGATGC-TGCTCTTATGTCTGC 974
|| || |||||||| || ||||| |||||||||| |||| || | ||||||| || ||
Sbjct 922 TATGCACCTGTTCTGTTTAAGACAATTGGTTTTGGAAATGACGCAT-CTCTTATATCCGC 980
Query 975 TGTTATAACCGGTGTTGTCAACATGCTTTCAACCTTTGTCTCAATTTACGCGGTTGATAG 1034
|| || |||||| ||||||| | || || ||| |||| || || ||| | || || |
Sbjct 981 AGTCATCACCGGTCTTGTCAATGTCCTCTCCACCATTGTTTCCATCTACTCCGTCGACAA 1040
Query 1035 ATAT-GGTA-G-A-AG-GTTGCTTTTCCTCGAAGGTGGCATT-CAAATGTTCATTTG--T 1086
|| | || | | | || ||| |||| || ||||||| || || ||| || |||
Sbjct 1041 AT-TCGG-ACGCAGAGCTTTG--TTTCTTC-AAGGTGG-TTTCCAGATGATC--TTGACC 1092
Query 1087 CAGCTTC-TTGTTGGTTCTTTCATC-GGTGCAAGATTCGGA-ACCTC-AGGAACCGGAAC 1142
||| || ||||| || | ||| |||| || ||| ||| | | |||| |||||
Sbjct 1093 CAG-ATCGCGGTTGGATCGATGATCGGGTGGAA-ATTTGGATTCAACGGGGAA--GGAAC 1148
Query 1143 ATTGACGCCAGCAACA-GCAGACTGGATTCTT-GCTTTCATATGTGTGTACGTTGCAGGA 1200
|||| | || | || || | | |||| || || |||||| | || || || ||
Sbjct 1149 ATTGTC-AGAGGTTGATGCGGA-TATAATCTTGGCATTGATATGTCTCTATGTGGCGGGT 1206
Query 1201 TTTGCATGGTCATGGGGTCCATTGGGATGGTTGGTACCGAGTGAGATATGTCCATTGGAA 1260
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TTTGCGTGGTCATGGGGACCGTTGGGATGGTTGGTACCGAGTGAGATATGTCCATTGGAA 1266
Query 1261 ATTAGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTTCT-CAT 1319
|||||| |||| |||||| | | ||||| ||||| |||||||||||||| || || |||
Sbjct 1267 ATTAGATCAGCAGGACAATCGTTAAACGTTTCGGTGAACATGTTCTTCACCTT-CTTCAT 1325
Query 1320 TGGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGC 1379
||| |||||||| ||||| |||||||| || ||||||||||||| ||||||||||| ||
Sbjct 1326 TGGACAATTCTTCTTGACGATGCTTTGCCATTTGAAGTTTGGTCTGTTCTACTTCTTCGC 1385
Query 1380 AAGCATGGT-TGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTG 1438
||||||| | ||||||||| ||||||||||||| |||||||||||||| ||||| |
Sbjct 1386 CGGCATGGTCTT-GATCATGACCATTTTCATTTACTTCTTGTTGCCGGAGACAAAAGGAG 1444
Query 1439 TTCCTATTGAAGAGATGGGAAGAGTTTGGAAG 1470
|||| ||||| |||||||| ||||| ||||||
Sbjct 1445 TTCCAATTGAGGAGATGGGGAGAGTGTGGAAG 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5