BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19950.1 Length=1313 Score E Sequences producing significant alignments: (Bits) Value Ahg479513 jgi|Araly1|479513|fgenesh2_kg.3__2214__AT3G19950.1 1958 0.0 > Ahg479513 jgi|Araly1|479513|fgenesh2_kg.3__2214__AT3G19950.1 Length=1304 Score = 1958 bits (1060), Expect = 0.0 Identities = 1237/1319 (94%), Gaps = 26/1319 (2%) Strand=Plus/Plus Query 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCGttttttttGTTTCGTCGTCTCTCTCTCGCGC 60 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCG----TTTTGTTTCGTCGTCTCTCTCTCGCGC 56 Query 61 TCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 TCTGAAAATTTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 116 Query 121 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATC 180 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 117 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCGCACAGTCACAATC 176 Query 181 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 236 Query 241 TACGAAGACCCTAACCCTAATC-AATCCCTCAATTTCAACCCTAACTCT-TCTGATTCCT 298 |||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||| Sbjct 237 TACGAAGACCCTAACCCTAATCCAA-CCCTCAATTTCAACCCTAACTCTGT-TGATTCCC 294 Query 299 TTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTG 358 ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 295 TTTTCCCCATGGCTGATCCTTTCTCCACCTTGCTCCCTCTCTTATTCGGCTCTTCCGCTG 354 Query 359 CCGCTCCTTCCGGCATGGACTTCATGAGCT-----T-ATTCGGTCCTTCGATGCAACCAC 412 || ||||||||||||||||||| ||||||| | ||||| ||| ||||||||||||| Sbjct 355 CCTCTCCTTCCGGCATGGACTTGATGAGCTCGAGCTTATTCGCTCCGTCGATGCAACCAC 414 Query 413 AGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 472 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 415 AGGCTCGTTCCACTCAGCAGAATCCCCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 474 Query 473 AGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATC 532 ||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||| Sbjct 475 AGAATCATCTCCAGAATCTGCGATCTAGCGGTACGCACGTTCAGTTCGTGATCGAGAATC 534 Query 533 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAG 592 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 535 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGACTACTTCTTTGGTCCAG 594 Query 593 GTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 652 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 595 GTCTTGAGCAGTTGATTCAGCAGCTTGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 654 Query 653 CTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGA 712 |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 655 CTGCTTCCAAATCCGCCATTGATGGGCTTCCTACTGTTAAGGTAACCAAGGATATGTTGA 714 Query 713 AATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTA 772 |||| ||||||||||| || || || |||||||| ||||||||||||||||||||||||| Sbjct 715 AATCCGAGATGAACCAGTGTGCCGTATGTATGGACGAGTTTGAGGATGGTAGCGATGTTA 774 Query 773 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGC 832 |||||||||||||||||||||||||||||||||| || |||||||| |||||| | |||| Sbjct 775 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGATTGCTTGCTCCCATGGCTGCAATTGC 834 Query 833 ATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACA 892 |||| || ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 835 ATAACTCATGTCCGGTTTGTCGATTCGAGTTGCCTACTGATGATCCTGAATATGAGAACA 894 Query 893 GGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 952 ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 895 GGACTCAAGGAATTCAGGCGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 954 Query 953 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCT 1012 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 955 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCTGGCT 1014 Query 1013 CGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAG 1072 |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| || Sbjct 1015 CGGGAGCACCTGGTGCCGGTGGAGGTAATCTTGAGACCAGGGGGGAAGATTTGGATTAAG 1074 Query 1073 AATGTGTTGGCCAG--TCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTC 1130 |||||||||||||| ||||||||||||||||||||||||||| |||| | | |||||| Sbjct 1075 AATGTGTTGGCCAGAGTCATTGCTTGGAAACTGGATCAGAAGGCTATC-A-C--AAGTTC 1130 Query 1131 TCCAACaaaaaatgaaaaaaCAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1190 |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 TCCAACAACAAA--AAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1188 Query 1191 CATATTTTGTACATTTaaaaaaaGTTAtttttttCGTTGTTATTTTGGGATTATATAACG 1250 |||||||||||||||| |||| ||| |||||| ||||||||||||||||| |||||||| Sbjct 1189 CATATTTTGTACATTTGAAAAGTGTTCTTTTTT-CGTTGTTATTTTGGGAT-ATATAACG 1246 Query 1251 AATGTGAAAGTTTTTAAAAATCGCAAATT-TTCAATTGAGTGTTGTTTATTTTTCTCAT 1308 ||||||| |||||| |||||| |||| || |||| |||||||||||||||||||||||| Sbjct 1247 AATGTGAGAGTTTTCAAAAATTGCAA-TTCTTCATTTGAGTGTTGTTTATTTTTCTCAT 1304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49102317096 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5