BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19950.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479513 jgi|Araly1|479513|fgenesh2_kg.3__2214__AT3G19950.1 1958 0.0
> Ahg479513 jgi|Araly1|479513|fgenesh2_kg.3__2214__AT3G19950.1
Length=1304
Score = 1958 bits (1060), Expect = 0.0
Identities = 1237/1319 (94%), Gaps = 26/1319 (2%)
Strand=Plus/Plus
Query 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCGttttttttGTTTCGTCGTCTCTCTCTCGCGC 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCG----TTTTGTTTCGTCGTCTCTCTCTCGCGC 56
Query 61 TCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCTGAAAATTTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 116
Query 121 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATC 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCGCACAGTCACAATC 176
Query 181 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 236
Query 241 TACGAAGACCCTAACCCTAATC-AATCCCTCAATTTCAACCCTAACTCT-TCTGATTCCT 298
|||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||
Sbjct 237 TACGAAGACCCTAACCCTAATCCAA-CCCTCAATTTCAACCCTAACTCTGT-TGATTCCC 294
Query 299 TTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTG 358
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 295 TTTTCCCCATGGCTGATCCTTTCTCCACCTTGCTCCCTCTCTTATTCGGCTCTTCCGCTG 354
Query 359 CCGCTCCTTCCGGCATGGACTTCATGAGCT-----T-ATTCGGTCCTTCGATGCAACCAC 412
|| ||||||||||||||||||| ||||||| | ||||| ||| |||||||||||||
Sbjct 355 CCTCTCCTTCCGGCATGGACTTGATGAGCTCGAGCTTATTCGCTCCGTCGATGCAACCAC 414
Query 413 AGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 472
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 AGGCTCGTTCCACTCAGCAGAATCCCCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 474
Query 473 AGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATC 532
||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||
Sbjct 475 AGAATCATCTCCAGAATCTGCGATCTAGCGGTACGCACGTTCAGTTCGTGATCGAGAATC 534
Query 533 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAG 592
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGACTACTTCTTTGGTCCAG 594
Query 593 GTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 652
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 595 GTCTTGAGCAGTTGATTCAGCAGCTTGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 654
Query 653 CTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGA 712
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 655 CTGCTTCCAAATCCGCCATTGATGGGCTTCCTACTGTTAAGGTAACCAAGGATATGTTGA 714
Query 713 AATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTA 772
|||| ||||||||||| || || || |||||||| |||||||||||||||||||||||||
Sbjct 715 AATCCGAGATGAACCAGTGTGCCGTATGTATGGACGAGTTTGAGGATGGTAGCGATGTTA 774
Query 773 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGC 832
|||||||||||||||||||||||||||||||||| || |||||||| |||||| | ||||
Sbjct 775 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGATTGCTTGCTCCCATGGCTGCAATTGC 834
Query 833 ATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACA 892
|||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 835 ATAACTCATGTCCGGTTTGTCGATTCGAGTTGCCTACTGATGATCCTGAATATGAGAACA 894
Query 893 GGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 952
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GGACTCAAGGAATTCAGGCGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 954
Query 953 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCTGGCT 1014
Query 1013 CGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAG 1072
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1015 CGGGAGCACCTGGTGCCGGTGGAGGTAATCTTGAGACCAGGGGGGAAGATTTGGATTAAG 1074
Query 1073 AATGTGTTGGCCAG--TCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTC 1130
|||||||||||||| ||||||||||||||||||||||||||| |||| | | ||||||
Sbjct 1075 AATGTGTTGGCCAGAGTCATTGCTTGGAAACTGGATCAGAAGGCTATC-A-C--AAGTTC 1130
Query 1131 TCCAACaaaaaatgaaaaaaCAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1190
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TCCAACAACAAA--AAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1188
Query 1191 CATATTTTGTACATTTaaaaaaaGTTAtttttttCGTTGTTATTTTGGGATTATATAACG 1250
|||||||||||||||| |||| ||| |||||| ||||||||||||||||| ||||||||
Sbjct 1189 CATATTTTGTACATTTGAAAAGTGTTCTTTTTT-CGTTGTTATTTTGGGAT-ATATAACG 1246
Query 1251 AATGTGAAAGTTTTTAAAAATCGCAAATT-TTCAATTGAGTGTTGTTTATTTTTCTCAT 1308
||||||| |||||| |||||| |||| || |||| ||||||||||||||||||||||||
Sbjct 1247 AATGTGAGAGTTTTCAAAAATTGCAA-TTCTTCATTTGAGTGTTGTTTATTTTTCTCAT 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5