BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19970.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479515 jgi|Araly1|479515|fgenesh2_kg.3__2216__AT3G19970.1 2300 0.0
> Ahg479515 jgi|Araly1|479515|fgenesh2_kg.3__2216__AT3G19970.1
Length=1628
Score = 2300 bits (1245), Expect = 0.0
Identities = 1534/1667 (92%), Gaps = 46/1667 (3%)
Strand=Plus/Plus
Query 192 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAGATTTGGAGTGTATTGGATTAGAT 251
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAAATTTGGAGTATATTGGATTAGAT 60
Query 252 TGTGGCGATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCACTTGTTGCTGCTGCTGC 311
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TGTGGTTATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCTCTTGTTGCTGCTGCTGC 120
Query 312 TGTGATTACAGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 371
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTATTGCCGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 180
Query 372 AGTTCGAGGTTCTGAATCAGAGCAGATTGCTCCTTCAGTGTCTGGTTTAGTTCAGGAAGA 431
|||||||||||||| || ||||||||||||||||| ||| | |||| ||||||||| ||
Sbjct 181 TGTTCGAGGTTCTGATTCGGAGCAGATTGCTCCTTCGGTGCCCGGTTCAGTTCAGGATGA 240
Query 432 AAGGTCCTTGTGGGTTTCTCAAGTCTCGGCCTCCAAGCT-TGCAGATTTATCTTTTGTGT 490
|||||||||||||||||||||| ||||||| |||||||| | | ||||||||||||||||
Sbjct 241 AAGGTCCTTGTGGGTTTCTCAAATCTCGGCTTCCAAGCTCT-CGGATTTATCTTTTGTGT 299
Query 491 CGAGGATTTGTGTTCCTGTACCAAATGTTGATCTCCTAGCTTCTAATCCTAGCTGTAGTC 550
|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 300 CGAGGATTCATGTTCCTGTACCAAATGTTGATCTCTTAGCTTCTAATCCCAGCTGTAGTC 359
Query 551 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTAGTGTTTATCAGTCTGCAGAGTTGG 610
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 360 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTTGTGTTTATCAGTCTGCTGAATTGG 419
Query 611 CTAAAGCATCGAAACCGGT-TGCATTCACAATC-GGTGCCTCACTTGTGGTTCCTGATAT 668
|||||||||| ||||| | |||||||||||| || ||||| |||||||||||||||||
Sbjct 420 CTAAAGCATCAAAACC-ATCGGCATTCACAATCAGG-GCCTCGCTTGTGGTTCCTGATAT 477
Query 669 TTCCTACAGATGGCATTTACCTGAGCCTAGTGCAGTCGATATGTCTGGTTCTTCGAGTTG 728
||||||||||||||||||||||||||| | |||| ||||| |||||||||| ||||||||
Sbjct 478 TTCCTACAGATGGCATTTACCTGAGCCCAATGCAATCGATTTGTCTGGTTCCTCGAGTTG 537
Query 729 TGTGTCTGAAAAGAATAGAACTGTTGTGGTTTTGCTTGGATGGCTTGGATCAAAGCAGAA 788
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 538 TGTGTCTGAGAAGAATAGAACCGTTGTGGTTTTGCTTGGATGGCTTGGATCGAAGCAGAA 597
Query 789 GCATCTGAAGAAATATGCTGATTGGTACACTTCAAAGGGTTACCATGTCATTACATTTAC 848
|||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 598 GCATCTGAAGAAATATGCGGATTGGTATACTTCAAGGGGTTACCATGTCATTACATTTAC 657
Query 849 TCTTCCGATGAATGAGATTATGAGTTATCAAGTTGGAGGGAAAGCAGAGAAGAACATCGA 908
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 TCTTCCCATGAATGAGATTATGAGTTATCAAGTTGGAGGAAAAGCAGAGAAGAACATCGA 717
Query 909 GTCGCTGGTTAATCACTTGGCTGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 968
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTCGTTGGTTAATCACTTGGCCGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 777
Query 969 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCCATTTTGGAAAAGTTTCAGAA 1028
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 778 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCTATTCTAGAAAAGTTTCAGAA 837
Query 1029 GCAAGATTCATCATTGATGGGAAGAGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 1088
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GCAAGATTCATCATTGATGGGAAGGGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 897
Query 1089 TGCTGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCTGCGTTCTTGAAGAAAAGCAG 1148
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 898 TGATGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCAGCGTTCTTGAAGAAAAACAG 957
Query 1149 TGTAGCCACTAAAGGATCTGCGAGCTCATCATATGAGTCAAACGGTATAAACATCTCCCA 1208
||||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||||||
Sbjct 958 CGTAGCTACTAAAGGATCTACGAGCTCGTCAAATGAGTCAAACGGTATAAACTTCTCCCA 1017
Query 1209 GCCTAAACC-CGCTGCAACAGAAACAGCTTTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1267
||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 GCCTAAACCGGGC-GCAACAGAAACAGCTCTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1076
Query 1268 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTTGACACATTATCAA 1327
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1077 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTAGACACTTTATCAT 1136
Query 1328 CAGCACAACCAAGTTGTCCACAGTTATACATTTACAGCTCTGCAGACAGAGTTATACCGG 1387
||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 1137 CAGCACAACCAAGATGTCCACAGCTATACATATACAGCTCTGCAGATAGAGTTATACCCG 1196
Query 1388 TGGAACAAGTTGAATCATTCATTGTAGAGCAGAGGAAAGCAGGACATGAGGTCCGTGCTT 1447
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1197 CGGAACAAGTTGAATCATTCATTGTAGAACAGAGGAAAGCTGGACACGAGGTCCGTGCTT 1256
Query 1448 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1316
Query 1508 CTGAGCTCAACCATTTCATGAACAACTTTGTCCTTTCTTGCTGCCACCATTCTTCATAGC 1567
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1317 CTGAGCTCAACCATTTCATGGACAACTTTGTCCTTTCTTGCTGCAACCATTCTTCATAGC 1376
Query 1568 GACTTCCACAAGTGTTGTTGTTGCTAACCATTTTTGGGGTCCTTTTAACTCTTATACAAG 1627
||||||||||||||||||||| ||||||| ||||||||||| | | || || ||
Sbjct 1377 GACTTCCACAAGTGTTGTTGTCGCTAACCTTTTTTGGGGTC-----A--T-TT-TA-AA- 1425
Query 1628 AAAGAGAAAAATAGTTACTGATTGATGATTCTTTTTGGTTTGGATTGGTTTATAGATTCA 1687
|||| | | ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1426 AAAG-------T--T-ACTGATTGATGATTCTTTTTGGTTTGGATAGGTCTATAGATTCA 1475
Query 1688 AATTCATTATTCCTTTGTAAATTGTTGGATATTGTACATTTAGGAGAATGA-A-GATTCA 1745
|||||||| ||||||||||| |||||||||||||| ||||||||||||| | ||||||
Sbjct 1476 AATTCATT---CCTTTGTAAATGGTTGGATATTGTACGTTTAGGAGAATGAGAAGATTCA 1532
Query 1746 AGAAAGTGACG-TCCTTGTCCTTTGTAGTGGAGATTTGGATCTTATGGTTGTCTTTTGTT 1804
||||||||||| | ||||||||||||| |||| | || || || ||| ||||||
Sbjct 1533 AGAAAGTGACGGTTCTTGTCCTTTGTATTGGA-A-----AT-TT--GG--GTCCTTTGTT 1581
Query 1805 ATTTGTTCAAAGAGGGTTGTTAAGAACCCAATCATAAAGTTTTTGGC 1851
|| |||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1582 ATATGTTCAGAGAGGGTTGTTAAGACCCCAATCATAAAGTATTTGGC 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5