BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19980.1 Length=1531 Score E Sequences producing significant alignments: (Bits) Value Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1 2396 0.0 Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1 1253 0.0 > Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1 Length=1515 Score = 2396 bits (1297), Expect = 0.0 Identities = 1465/1540 (95%), Gaps = 35/1540 (2%) Strand=Plus/Plus Query 1 AACGCAAAAGTTTGATTTGCGTTGGAAGCGGCAGAGATCGATCTGGGATCtttttttctt 60 ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | Sbjct 1 AACGCAAAAGTGTGATTTGCGTTTGAAGCGGCAGAGATCGATCTGGGATTTTTTTTTC-T 59 Query 61 tttGCCGTATGTGTCATTTTGTGAAACTCGAACCTCTC---ATTCTCTCTTTCATCTCCT 117 ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 60 TTTGCCGTA--TGTCATTTTGTGGAACTCGAACCTCTCATTATTCTCTCTTTCATCTCCT 117 Query 118 CCTCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTCGATTCGATTC 177 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 118 CCGCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTTGATTCGATTC 177 Query 178 GATTCCTCTTTTTTCCCAGAAAAGTCGCTATTGAAATCGAACGAAAG-TGTTGAAG-ATT 235 ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 178 GATTCTTCTTTTTTCCCAGAAAAGTCGCTATTGAATTCGAACGAAAGAGGTT-TAGTTTT 236 Query 236 TTACCAGTCAGAGGtatatatatataGAGAGAGAGTTATGGATTTGGATCAATGGATTTC 295 |||||||||||||| |||||||| || | |||||||||||||||||||||||||| Sbjct 237 TTACCAGTCAGAGG------TATATAGATAG-G-GTTATGGATTTGGATCAATGGATTTC 288 Query 296 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 348 Query 356 GAAAGAGATTCTGATTGAGGAGTCAAACGTACAGCCTGTAAACAGTCCAGTCACCGTATG 415 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 349 GAAAGAGATTCTGATTGAGGAGTCTAACGTACAGCCTGTAAACAGTCCAGTCACAGTATG 408 Query 416 TGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACCGGAGGTCATGT 475 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 409 TGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACTGGAGGTCATGT 468 Query 476 TCCCGACACCAATTACATTTTTATGGGGGACTTCGTGGATAGAGGTTACAACAGCCTTGA 535 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 469 TCCCGACACCAATTACATTTTTATGGGGGACTTTGTGGATAGAGGTTACAACAGCCTTGA 528 Query 536 AGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATATCCAGCCAATATTACACTTTTGCG 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 AGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATATCCAGCCAATATTACACTTTTGCG 588 Query 596 CGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTATGGTTTCTATGACGAATGCCAGAG 655 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 TGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTATGGTTTCTATGACGAATGCCAGAG 648 Query 656 GAAGTATGGTAACGCTAATGCGTGGCGATATTGCACAGATGTTTTTGACTATCTTACCCT 715 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 649 GAAGTATGGTAACGCTAATGCTTGGCGATATTGCACAGATGTTTTTGACTATCTTACCCT 708 Query 716 GTCAGCTATTATAGATGGCACAGTTCTATGTGTTCACGGTGGCCTTTCCCCGGATGTCCG 775 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 709 GTCAGCTATTATAGATGGCACAGTTCTATGTGTCCACGGGGGCCTTTCCCCGGATGTTCG 768 Query 776 GACAATTGATCAGATAAGACTGATCGAGCGAAATTGCGAAATTCCTCATGAAGGGCCCTT 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 GACAATTGATCAGATAAGACTGATCGAGCGAAATTGCGAAATTCCTCATGAAGGGCCCTT 828 Query 836 TTGCGATCTTATGTGGAGTGATCCTGAAGATATTGAAACATGGGCGGTTAGTCCACGTGG 895 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 829 TTGCGATCTTATGTGGAGCGATCCTGAAGATATTGAAACATGGGCGGTTAGTCCACGTGG 888 Query 896 AGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAGTTTAACCATATCAACAAGCTGGA 955 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 889 AGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAGTTTAACCATATCAACAAGCTTGA 948 Query 956 TCTAGTATGCCGCGCGCACCAACTTGTACAAGAAGGTCTTAAGTACATGTTCCAAGATAA 1015 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 949 TCTAGTATGCCGCGCGCACCAGCTTGTACAAGAAGGTCTTAAGTACATGTTCCAAGATAA 1008 Query 1016 AGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCTTC 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1009 AGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCATC 1068 Query 1076 TATATTGAGTTTCAATGACAACATGGAAAGGGAAGTGAAGTTCTTCACAGAGACAGAAGA 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 TATATTGAGTTTCAATGACAACATGGAAAGGGAAGTGAAGTTCTTCACAGAGACAGAAGA 1128 Query 1136 GAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCGTATTTCCTATGAAGAATCACACT 1195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 GAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCGTATTTCCTATGAAGAATCACACT 1188 Query 1196 TATTATATTTGCTGTGATGATGAAGCCATTGCTGCCATTGGCAATATGTTCAGTTCAATG 1255 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1189 -ATTATATTTGCTGTGATGATGAAGCCATTGCTGCCATTGGCAATATGTTCAGTG---T- 1243 Query 1256 TGGAAAAGGTTAATATATGATTATATATATTATCTACTGATGGGTTTCGCTTACTATCAT 1315 || ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1244 TG-AAAAGGTTAATATATAATTATATATATTATCTATTGATGGGTTTCACTTACTATCAT 1302 Query 1316 TATTTTTGTCCTTTAGGTTACATTTCCCTTGTGAAAGTTACAAGTCAAA--CACTTT-GG 1372 ||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| || Sbjct 1303 TATTTTTGTCCTTTAGGTTACATTTTCCTTATGAAAGTTATAAGTCAAAAACACTTTTGG 1362 Query 1373 TAATAGTCTTAGTCATTTTGATTCTCTGCT-CTCTTTTCTTTCCCCC-AATCTTTCTTCT 1430 || |||| ||||||||||||| ||||| || ||||| | |||||||| |||||||||||| Sbjct 1363 TATTAGTTTTAGTCATTTTGAGTCTCT-CTACTCTTCT-TTTCCCCCCAATCTTTCTTCT 1420 Query 1431 GTAATGTTAtttttttcattgttcacttgtactgtttcctctgtttttgttgttgttgtt 1490 |||||||| |||||||||||||||||||| |||||||||||| |||| | |||||||| Sbjct 1421 GTAATGTTTTTTTTTTCATTGTTCACTTGCACTGTTTCCTCTATTTTC-T-GTTGTTGT- 1477 Query 1491 gtGAAGATGACATTAATTCTAAAATAATCAAACATCGTTA 1530 | ||||||||||||||||||||||||||||||||||||| Sbjct 1478 G--AAGATGACATTAATTCTAAAATAATCAAACATCGTTA 1515 > Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1 Length=1448 Score = 1253 bits (678), Expect = 0.0 Identities = 834/912 (91%), Gaps = 0/912 (0%) Strand=Plus/Plus Query 273 ATGGATTTGGATCAATGGATTTCCAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAG 332 |||||||| |||||||||||||||||||||||||| || || |||||||| ||||||||| Sbjct 239 ATGGATTTAGATCAATGGATTTCCAAGGTTAAAGACGGCCAACATCTCTCTGAAGACGAG 298 Query 333 CTTCAGCTTCTCTGCGAATACGTGAAAGAGATTCTGATTGAGGAGTCAAACGTACAGCCT 392 ||||| ||||||||||||||||||||||| ||||| |||||||| || || ||||| ||| Sbjct 299 CTTCAACTTCTCTGCGAATACGTGAAAGAAATTCTTATTGAGGAATCTAATGTACAACCT 358 Query 393 GTAAACAGTCCAGTCACCGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAG 452 || |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 359 GTCAACAGTCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCATGATCTAATGAAG 418 Query 453 CTTTTTCAGACCGGAGGTCATGTTCCCGACACCAATTACATTTTTATGGGGGACTTCGTG 512 ||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| Sbjct 419 CTTTTCCAGACCGGAGGTCATGTTCCCGAGACAAATTACATATTTATGGGGGATTTCGTT 478 Query 513 GATAGAGGTTACAACAGCCTTGAAGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATAT 572 ||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| || Sbjct 479 GATAGAGGTTACAACAGTCTTGAAGTTTTCACCATTCTTTTGCTTCTTAAAGCAAGACAT 538 Query 573 CCAGCCAATATTACACTTTTGCGCGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTAT 632 ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 539 CCAGCCAATATCACACTTTTGCGTGGAAATCATGAAAGTAGACAGCTAACTCAGGTGTAT 598 Query 633 GGTTTCTATGACGAATGCCAGAGGAAGTATGGTAACGCTAATGCGTGGCGATATTGCACA 692 |||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||| Sbjct 599 GGTTTCTATGACGAATGCCAAAGGAAGTATGGTAATGCTAATGCATGGAGATATTGCACG 658 Query 693 GATGTTTTTGACTATCTTACCCTGTCAGCTATTATAGATGGCACAGTTCTATGTGTTCAC 752 ||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| Sbjct 659 GATGTTTTTGACTATCTCACACTTTCAGCTATTATAGATGGAACTGTTCTATGTGTTCAT 718 Query 753 GGTGGCCTTTCCCCGGATGTCCGGACAATTGATCAGATAAGACTGATCGAGCGAAATTGC 812 ||||||||||| || ||||| ||||||||||| ||||||||| |||| ||||| |||||| Sbjct 719 GGTGGCCTTTCACCTGATGTACGGACAATTGACCAGATAAGATTGATTGAGCGGAATTGC 778 Query 813 GAAATTCCTCATGAAGGGCCCTTTTGCGATCTTATGTGGAGTGATCCTGAAGATATTGAA 872 ||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 779 GAAATACCGCATGAAGGACCCTTCTGTGATCTTATGTGGAGTGATCCTGAAGATATTGAA 838 Query 873 ACATGGGCGGTTAGTCCACGTGGAGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAG 932 |||||||| || |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 839 ACATGGGCTGTCAGTCCACGTGGAGCTGGTTGGCTTTTTGGGTCCAGGGTTACCACTGAG 898 Query 933 TTTAACCATATCAACAAGCTGGATCTAGTATGCCGCGCGCACCAACTTGTACAAGAAGGT 992 ||||||||||| ||||| || ||||||||||| || || ||||| ||||||||||||||| Sbjct 899 TTTAACCATATTAACAATCTTGATCTAGTATGTCGTGCTCACCAGCTTGTACAAGAAGGT 958 Query 993 CTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGT 1052 || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 959 CTCAAGTACATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGCACCTAATTACTGC 1018 Query 1053 TACCGCTGTGGGAATGTCGCTTCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGTG 1112 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TACCGCTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGTG 1078 Query 1113 AAGTTCTTCACAGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCG 1172 || |||||||| ||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1079 AAATTCTTCACGGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGAACAGGTGTTCCT 1138 Query 1173 TATTTCCTATGA 1184 |||||||| ||| Sbjct 1139 TATTTCCTGTGA 1150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57325818725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5