BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19980.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1 2396 0.0
Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1 1253 0.0
> Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1
Length=1515
Score = 2396 bits (1297), Expect = 0.0
Identities = 1465/1540 (95%), Gaps = 35/1540 (2%)
Strand=Plus/Plus
Query 1 AACGCAAAAGTTTGATTTGCGTTGGAAGCGGCAGAGATCGATCTGGGATCtttttttctt 60
||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 1 AACGCAAAAGTGTGATTTGCGTTTGAAGCGGCAGAGATCGATCTGGGATTTTTTTTTC-T 59
Query 61 tttGCCGTATGTGTCATTTTGTGAAACTCGAACCTCTC---ATTCTCTCTTTCATCTCCT 117
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 60 TTTGCCGTA--TGTCATTTTGTGGAACTCGAACCTCTCATTATTCTCTCTTTCATCTCCT 117
Query 118 CCTCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTCGATTCGATTC 177
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 CCGCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTTGATTCGATTC 177
Query 178 GATTCCTCTTTTTTCCCAGAAAAGTCGCTATTGAAATCGAACGAAAG-TGTTGAAG-ATT 235
||||| ||||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 178 GATTCTTCTTTTTTCCCAGAAAAGTCGCTATTGAATTCGAACGAAAGAGGTT-TAGTTTT 236
Query 236 TTACCAGTCAGAGGtatatatatataGAGAGAGAGTTATGGATTTGGATCAATGGATTTC 295
|||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct 237 TTACCAGTCAGAGG------TATATAGATAG-G-GTTATGGATTTGGATCAATGGATTTC 288
Query 296 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 348
Query 356 GAAAGAGATTCTGATTGAGGAGTCAAACGTACAGCCTGTAAACAGTCCAGTCACCGTATG 415
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 349 GAAAGAGATTCTGATTGAGGAGTCTAACGTACAGCCTGTAAACAGTCCAGTCACAGTATG 408
Query 416 TGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACCGGAGGTCATGT 475
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 TGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACTGGAGGTCATGT 468
Query 476 TCCCGACACCAATTACATTTTTATGGGGGACTTCGTGGATAGAGGTTACAACAGCCTTGA 535
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 469 TCCCGACACCAATTACATTTTTATGGGGGACTTTGTGGATAGAGGTTACAACAGCCTTGA 528
Query 536 AGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATATCCAGCCAATATTACACTTTTGCG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATATCCAGCCAATATTACACTTTTGCG 588
Query 596 CGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTATGGTTTCTATGACGAATGCCAGAG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTATGGTTTCTATGACGAATGCCAGAG 648
Query 656 GAAGTATGGTAACGCTAATGCGTGGCGATATTGCACAGATGTTTTTGACTATCTTACCCT 715
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAAGTATGGTAACGCTAATGCTTGGCGATATTGCACAGATGTTTTTGACTATCTTACCCT 708
Query 716 GTCAGCTATTATAGATGGCACAGTTCTATGTGTTCACGGTGGCCTTTCCCCGGATGTCCG 775
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 709 GTCAGCTATTATAGATGGCACAGTTCTATGTGTCCACGGGGGCCTTTCCCCGGATGTTCG 768
Query 776 GACAATTGATCAGATAAGACTGATCGAGCGAAATTGCGAAATTCCTCATGAAGGGCCCTT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GACAATTGATCAGATAAGACTGATCGAGCGAAATTGCGAAATTCCTCATGAAGGGCCCTT 828
Query 836 TTGCGATCTTATGTGGAGTGATCCTGAAGATATTGAAACATGGGCGGTTAGTCCACGTGG 895
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTGCGATCTTATGTGGAGCGATCCTGAAGATATTGAAACATGGGCGGTTAGTCCACGTGG 888
Query 896 AGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAGTTTAACCATATCAACAAGCTGGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 889 AGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAGTTTAACCATATCAACAAGCTTGA 948
Query 956 TCTAGTATGCCGCGCGCACCAACTTGTACAAGAAGGTCTTAAGTACATGTTCCAAGATAA 1015
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCTAGTATGCCGCGCGCACCAGCTTGTACAAGAAGGTCTTAAGTACATGTTCCAAGATAA 1008
Query 1016 AGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCTTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1009 AGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCATC 1068
Query 1076 TATATTGAGTTTCAATGACAACATGGAAAGGGAAGTGAAGTTCTTCACAGAGACAGAAGA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TATATTGAGTTTCAATGACAACATGGAAAGGGAAGTGAAGTTCTTCACAGAGACAGAAGA 1128
Query 1136 GAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCGTATTTCCTATGAAGAATCACACT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCGTATTTCCTATGAAGAATCACACT 1188
Query 1196 TATTATATTTGCTGTGATGATGAAGCCATTGCTGCCATTGGCAATATGTTCAGTTCAATG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1189 -ATTATATTTGCTGTGATGATGAAGCCATTGCTGCCATTGGCAATATGTTCAGTG---T- 1243
Query 1256 TGGAAAAGGTTAATATATGATTATATATATTATCTACTGATGGGTTTCGCTTACTATCAT 1315
|| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1244 TG-AAAAGGTTAATATATAATTATATATATTATCTATTGATGGGTTTCACTTACTATCAT 1302
Query 1316 TATTTTTGTCCTTTAGGTTACATTTCCCTTGTGAAAGTTACAAGTCAAA--CACTTT-GG 1372
||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||
Sbjct 1303 TATTTTTGTCCTTTAGGTTACATTTTCCTTATGAAAGTTATAAGTCAAAAACACTTTTGG 1362
Query 1373 TAATAGTCTTAGTCATTTTGATTCTCTGCT-CTCTTTTCTTTCCCCC-AATCTTTCTTCT 1430
|| |||| ||||||||||||| ||||| || ||||| | |||||||| ||||||||||||
Sbjct 1363 TATTAGTTTTAGTCATTTTGAGTCTCT-CTACTCTTCT-TTTCCCCCCAATCTTTCTTCT 1420
Query 1431 GTAATGTTAtttttttcattgttcacttgtactgtttcctctgtttttgttgttgttgtt 1490
|||||||| |||||||||||||||||||| |||||||||||| |||| | ||||||||
Sbjct 1421 GTAATGTTTTTTTTTTCATTGTTCACTTGCACTGTTTCCTCTATTTTC-T-GTTGTTGT- 1477
Query 1491 gtGAAGATGACATTAATTCTAAAATAATCAAACATCGTTA 1530
| |||||||||||||||||||||||||||||||||||||
Sbjct 1478 G--AAGATGACATTAATTCTAAAATAATCAAACATCGTTA 1515
> Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1
Length=1448
Score = 1253 bits (678), Expect = 0.0
Identities = 834/912 (91%), Gaps = 0/912 (0%)
Strand=Plus/Plus
Query 273 ATGGATTTGGATCAATGGATTTCCAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAG 332
|||||||| |||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 239 ATGGATTTAGATCAATGGATTTCCAAGGTTAAAGACGGCCAACATCTCTCTGAAGACGAG 298
Query 333 CTTCAGCTTCTCTGCGAATACGTGAAAGAGATTCTGATTGAGGAGTCAAACGTACAGCCT 392
||||| ||||||||||||||||||||||| ||||| |||||||| || || ||||| |||
Sbjct 299 CTTCAACTTCTCTGCGAATACGTGAAAGAAATTCTTATTGAGGAATCTAATGTACAACCT 358
Query 393 GTAAACAGTCCAGTCACCGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAG 452
|| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 359 GTCAACAGTCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCATGATCTAATGAAG 418
Query 453 CTTTTTCAGACCGGAGGTCATGTTCCCGACACCAATTACATTTTTATGGGGGACTTCGTG 512
||||| ||||||||||||||||||||||| || |||||||| ||||||||||| |||||
Sbjct 419 CTTTTCCAGACCGGAGGTCATGTTCCCGAGACAAATTACATATTTATGGGGGATTTCGTT 478
Query 513 GATAGAGGTTACAACAGCCTTGAAGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATAT 572
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| ||
Sbjct 479 GATAGAGGTTACAACAGTCTTGAAGTTTTCACCATTCTTTTGCTTCTTAAAGCAAGACAT 538
Query 573 CCAGCCAATATTACACTTTTGCGCGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTAT 632
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 539 CCAGCCAATATCACACTTTTGCGTGGAAATCATGAAAGTAGACAGCTAACTCAGGTGTAT 598
Query 633 GGTTTCTATGACGAATGCCAGAGGAAGTATGGTAACGCTAATGCGTGGCGATATTGCACA 692
|||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 599 GGTTTCTATGACGAATGCCAAAGGAAGTATGGTAATGCTAATGCATGGAGATATTGCACG 658
Query 693 GATGTTTTTGACTATCTTACCCTGTCAGCTATTATAGATGGCACAGTTCTATGTGTTCAC 752
||||||||||||||||| || || ||||||||||||||||| || ||||||||||||||
Sbjct 659 GATGTTTTTGACTATCTCACACTTTCAGCTATTATAGATGGAACTGTTCTATGTGTTCAT 718
Query 753 GGTGGCCTTTCCCCGGATGTCCGGACAATTGATCAGATAAGACTGATCGAGCGAAATTGC 812
||||||||||| || ||||| ||||||||||| ||||||||| |||| ||||| ||||||
Sbjct 719 GGTGGCCTTTCACCTGATGTACGGACAATTGACCAGATAAGATTGATTGAGCGGAATTGC 778
Query 813 GAAATTCCTCATGAAGGGCCCTTTTGCGATCTTATGTGGAGTGATCCTGAAGATATTGAA 872
||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 779 GAAATACCGCATGAAGGACCCTTCTGTGATCTTATGTGGAGTGATCCTGAAGATATTGAA 838
Query 873 ACATGGGCGGTTAGTCCACGTGGAGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAG 932
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 839 ACATGGGCTGTCAGTCCACGTGGAGCTGGTTGGCTTTTTGGGTCCAGGGTTACCACTGAG 898
Query 933 TTTAACCATATCAACAAGCTGGATCTAGTATGCCGCGCGCACCAACTTGTACAAGAAGGT 992
||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||||
Sbjct 899 TTTAACCATATTAACAATCTTGATCTAGTATGTCGTGCTCACCAGCTTGTACAAGAAGGT 958
Query 993 CTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGT 1052
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 959 CTCAAGTACATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGCACCTAATTACTGC 1018
Query 1053 TACCGCTGTGGGAATGTCGCTTCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGTG 1112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TACCGCTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGTG 1078
Query 1113 AAGTTCTTCACAGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCG 1172
|| |||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1079 AAATTCTTCACGGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGAACAGGTGTTCCT 1138
Query 1173 TATTTCCTATGA 1184
|||||||| |||
Sbjct 1139 TATTTCCTGTGA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5