BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19990.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479517 jgi|Araly1|479517|fgenesh2_kg.3__2218__AT3G19990.1 2091 0.0
Ahg344261 jgi|Araly1|344261|fgenesh1_pg.C_scaffold_4000603 433 2e-120
Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321 422 4e-117
> Ahg479517 jgi|Araly1|479517|fgenesh2_kg.3__2218__AT3G19990.1
Length=1295
Score = 2091 bits (1132), Expect = 0.0
Identities = 1240/1294 (96%), Gaps = 0/1294 (0%)
Strand=Plus/Plus
Query 18 AGACAAAATGGGTTCATCATCATCTCCATCCCCGAACGACGCCGTACTGGAATCAGCCCG 77
||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||
Sbjct 2 AGACAAAATGGGTTCATCATCATCTCCATCCCCAAACGACACCATACTTGAATCAGCCCG 61
Query 78 ACCTTTTCTCCGAGGAGAGCTTGAAAAGATCGACCCCAAACTCCCGTCGTTAATCGCCGT 137
|| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 62 GCCCTTTCTCCGAGGAGAGCTCGAGAATATCGACCCCAAACTCCCGTCGTTAATCGCCGT 121
Query 138 CCTCAAAAGCGTCGGTGCCGGCGAGTGTTGGCACAAACACGGAAGCTTCCTAGATCACTT 197
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 122 CCTCAAAAGCGTCGGTGCCGGCGAGTGTTGGCACAAACACGGGAGCTTCCTAGATCACTT 181
Query 198 AATCGATATCTACAAGATCCTCAAGCTATGGAAAGCTCCTGAATCCGTCTGTCTCTGTGG 257
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 GATCGATATCTACAAGATCCTCAAGCTATGGAAAGCTCCTGAATCCGTCTGCCTCTGTGG 241
Query 258 TCTATTCCACTCTGCTTACTCCAATTCCTATGTCAATTTAGCTATTTTCGATCCTTCCAC 317
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 242 TCTATTTCACTCTGCTTACTCCAATTCTTATGTCAATTTAGCCATTTTCGATCCTTCCAC 301
Query 318 TGGTCGTGACGTCGTCCGTGATCACGTCGGTGAAGCTGCCGAGTCGTTGATCCATCTCTT 377
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 302 TGGTCGTGACGTTGTTCGTGATCATGTCGGTGAAGCTGCTGAGTCGTTGATCCATCTCTT 361
Query 378 CTGCGTTGTACCGAGACAAACTCTGATTCACGATGAGCTTTTGTTTAAGTACTCTGATTG 437
|||||||||||||||||||||||||||||||| || || || || |||||||||||| |
Sbjct 362 TTGCGTTGTACCGAGACAAACTCTGATTCACGACGATCTATTATTCAAGTACTCTGATCG 421
Query 438 TGAGCTCGTTGAGCATCTTGATTGTTCTGAGGTTTCGTTGAGGAACGCAAAGGAGAAAGG 497
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 422 TGAGCTCGTTGAGCATCTTGATTGTTCCGAGGTTTCGTTGAGGAACGCCAAGGAGAAAGG 481
Query 498 GATTTTTGATGGAGATGAAGAGTGGAGGAAGAAGATTAATGCTTTGGTTCCTGAGAACGG 557
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 482 GGTCTTTGATGGAGATGAAGAGTGGAGGAAGAAGATTAATGGTTTGGTTCCTGAGAATGG 541
Query 558 TGTTGTTGTGAAGCATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGG 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTTGTTGTGAAGCATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGG 601
Query 618 TGTTTTCTTGTTAATGACAATGGCGGATTTTAGTGATCAGCTTTTTGGGTTCCAAGATGA 677
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 602 TGTTTTCTTGCTAATGACAATGGCGGATTTTAGTGATCAGCTTTTTGGGTTTCAAGATGA 661
Query 678 GTTGTTCTGTAATCATGATGGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTG 737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCTGTTCTGTAATCATGATGGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTG 721
Query 738 GCCTGGGAATGGGAAGCCTGGACTGTGGATGAATTCTAATTCGAGAATGGGAGCGATTTA 797
||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 722 GCCTGGGAATGGGAAACCTGGACTGTGGTTGAATTCGAATTCGAGGATGGGAGCGATTTA 781
Query 798 TAGTTTGATTGTGAGAGAAGAGGAGATTTTGATGGAAGAGAGGAGAAGGGCTTTTGGTTC 857
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 782 TAGTTTGATTGTGAGAGAAGAGGAGATTTTGATGGAGGAGAGGAGAAGGGCTTTTGGTTC 841
Query 858 TGGGTTTGAAGTGAGGAAGGAAAGAGATGAGGATATAGATCTTGTCGTGCCTCCAGTTTT 917
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 842 TGGGTTTGAAGTGAGGAAGGAGAGAGATGAGGATATAGAGCTCGTTGTGCCTCCAGTTTT 901
Query 918 CAGCTTCTGCACCAAGGTATTGGATGCAAAAGAGCAGATAGAAGCAAGGGAGATGTACTG 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CAGCTTCTGCACCAAGGTATTGGATGCAAAAGAGCAGATAGAAGCAAGGGAGATGTACTG 961
Query 978 GGAAGTTGTGAGCAGTGACACAAGCAAAGAAGGGTACTTGGAGAGAGCAGAGGAGAGATT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GGAAGTTGTGAGCAGTGACACAAGCAAAGAAGGGTACTTGGAGAGAGCAGAGGAGAGATT 1021
Query 1038 GTTGGGTTGTATTGAGAAGAACCCATTTGTGGGAGAGCCACATGTGTTGTTGAGTCAAGT 1097
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1022 GTTGGGGTGTATTGAGAAGAACCCATTCGTGGGAGAGCCACATGTGTTGTTGAGCCAAGT 1081
Query 1098 GTACTTGGgaaagaagagattcaaagaagcagagagagaggcagagaaagGGCTTCTTCT 1157
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1082 GTACTTGGGAAAGAAGAGATTCAAAGAAGCAGAGAGAGAAGCAGAGAAAGGGCTTCTTCT 1141
Query 1158 GCTCTTGCAATGGGGAAGTCCTTGGGACAAGAGAATGTCATGGGAAGGTTGGATTGCTTG 1217
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1142 GCTTTTGCAATGGGGAAGTCCTTGGGACAAGAGAATGTCATGGCAAGGTTGGATTGCTTG 1201
Query 1218 GGTTAGGGTTCTTCTCATGAAGTCACAGGATCAATCTTGGCCTGATGTTTCTTGGGGTAT 1277
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1202 GGTTAGGGTGCTTCTCATGAAATCACAGGATCAATCTTGGCCTGACGTTTCTTGGGGTAT 1261
Query 1278 CTTGAACTTGGGTCTCGTGCGCTAATAAGATTGT 1311
||||||||||||||| ||||||||||||||||||
Sbjct 1262 CTTGAACTTGGGTCTTGTGCGCTAATAAGATTGT 1295
> Ahg344261 jgi|Araly1|344261|fgenesh1_pg.C_scaffold_4000603
Length=1137
Score = 433 bits (234), Expect = 2e-120
Identities = 298/327 (91%), Gaps = 12/327 (4%)
Strand=Plus/Plus
Query 526 AAGAAGATTAATGCTTTGGTTCCTGAGAACGGTGTTGTTGTGAAGCATATCAAGACAGGT 585
||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 358 AAGAAGATTAATGGTTTGGTTCCTGATAATGGTGTTGTTGTGAAACATATCAAGACAGGT 417
Query 586 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCTTGTTAATGACAATGGCGGAT 645
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 418 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCCTGCTAATGACAATGGCGGAG 477
Query 646 TTTAGTGATCAGCTTTTTGGGTTCCAAGATGAGTTGTTCTGTAATC-AT-GATGGGAGAC 703
|||||||||||| |||||||| ||||||||||||| || | || | || | | ||||||
Sbjct 478 TTTAGTGATCAGTTTTTTGGGCTCCAAGATGAGTT-TT-T-CAA-CTATGGCT-GGAGAC 532
Query 704 TTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTGGGAATGGGAAGCCTGGACTGT 763
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 533 TTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTAGGAATGGGAAACCTGGACTGT 592
Query 764 GGATGAATTCTAATTCGAGAATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGA 823
|| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGTTGAATTCGAATTCAAGGATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGA 652
Query 824 TTTTGAT-G-GAA-GAGAGGAGAAGGG 847
||||||| | ||| || || |||||||
Sbjct 653 TTTTGATAGAGAATGA-AG-AGAAGGG 677
> Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321
Length=3522
Score = 422 bits (228), Expect = 4e-117
Identities = 297/328 (91%), Gaps = 14/328 (4%)
Strand=Plus/Plus
Query 526 AAGAAGATTAATGCTTTGGTTCCTGAGAACGGTGTTGTTGTGAAGCATATCAAGACAGGT 585
||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 346 AAGAAGATTAATGGTTTGGTTCCTGATAATGGTGTTGTTGTGAAACATATCAAGACAGGT 405
Query 586 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCTTGTTAATGACAATGGCGGAT 645
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 406 GAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCCTGCTAATGACAATGGCGGAG 465
Query 646 TTTAGTGATCAGCTTTT-TGGGTTCCAAGATGAGTTGTTCTGTAATC-AT-GATGGGAGA 702
||||||| |||| |||| ||| ||||||||||||| || | || | || | | |||||
Sbjct 466 TTTAGTGGTCAG-TTTTGCGGGCTCCAAGATGAGTT-TT-T-CAA-CTATGGCT-GGAGA 519
Query 703 CTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTGGGAATGGGAAGCCTGGACTG 762
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 520 CTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTGGGAATGGGAAACCTGGACTG 579
Query 763 TGGATGAATTCTAATTCGAGAATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAG 822
||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGGTTGAATTCGAATTCAAGGATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAG 639
Query 823 ATTTTGAT-G-GAA-GAGAGGAGAAGGG 847
|||||||| | ||| || || |||||||
Sbjct 640 ATTTTGATAGAGAATGA-AG-AGAAGGG 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5