BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20000.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479518 jgi|Araly1|479518|fgenesh2_kg.3__2219__AT3G20000.1 1943 0.0
> Ahg479518 jgi|Araly1|479518|fgenesh2_kg.3__2219__AT3G20000.1
Length=1311
Score = 1943 bits (1052), Expect = 0.0
Identities = 1249/1339 (93%), Gaps = 34/1339 (3%)
Strand=Plus/Plus
Query 1 AAGCTGAAGAAAACCCTTAATTCTCTTTCTCTTGTTCCATTTCGTCCCATTTTGTTCTTT 60
||||||||||||||||||| ||| ||| ||||| | |||||| | | || | ||
Sbjct 1 AAGCTGAAGAAAACCCTTACTTCGCTTACTCTTCTACCATTT-G---C---TT-CCCATT 52
Query 61 CTACTGTCGCCGTAAAGGATATTCAAAAGCGGTAGAGGCGGCGATGGCGGATCTTTTACC 120
| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 53 -T--TGTCGCCGTAAAGGATATTCAAAAGCGGTAGCGGCGGCGATGGCGGATATTTTCCC 109
Query 121 ACCTCTTACGGCGGCACAAGTCGATGCTAAGACTAAAGTCGATGAGAAAGTCGATTACTC 180
|||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 110 ACCTCTCACGGCGGCACAAGTCGATGCAAAGATTAAAGTCGATGAGAAAGTCGATTACTC 169
Query 181 GAACCTCCCTTCTCCTGTTCCCTATGAGGAACTCCACCGTGAAGCTCTCATGTCTTTAAA 240
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 170 CAACCTCCCTTGTCCTGTTCCCTATGAGGAACTCCACCGAGAAGCTCTCATGTCTTTAAG 229
Query 241 GTCGGACAATTTTGAGGGTTTACGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTTC 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 230 GTCGGACAATTTTGAGGGTTTACGCTTTGACTTTACCAGGGCGTTGAATCAGAAGTTTTC 289
Query 301 TCTCAGTCATAGTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTAC 360
|||||||||||| || |||||||||||||||||| ||||| | |||||| ||| || ||
Sbjct 290 TCTCAGTCATAGCGTGATGATGGGGCCAACCGAAATTCCTTCCCAGTCATCTG-AA--AC 346
Query 361 TATCAAAATTCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCAAAGTTGCT 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 347 TATCAAAATCCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCAAAGTTGTT 406
Query 421 GCTCATCGGAAGGGTAATGACTGATGGTAGACTAAATGCGAGACTGAAAGCAGATTTAAC 480
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 407 GCTCATCGGAAGGGTAATGACTGATGGTAGACTAAGTGCGAGAGTGAAAGCAGATTTAAC 466
Query 481 TGATAAGTTAGTTGTGAAGGCGAATGCTCTGATAACAAATGAGGAACAT-ATGTCACAAG 539
||| ||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct 467 TGAGAAGTTAGTTGTGAAGGCGAATGCTCAGATAACAAATGAGCAACATCA-GTCACAAG 525
Query 540 CAATGTTCAACTTTGATTACATGGGATCAGACTACAGAGCTCAGCTTCAACTTGGACAGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 526 CAATGTTCAACTTTGATTACATGGGATCAGACTACAGAGCTCAGCTTCAAGTTGGACAGA 585
Query 600 GTGCCCTAATTGGAGCAACTTATATCCAGAGTGTTACAAACCATTTATCCTTGGGTGGTG 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 586 GTGCCCTAATTGGAGCAACTTATATCCAGAGTGTTACAAACCATTTATCTTTGGGTGGTG 645
Query 660 AAATTTTCTGGGCTGGTGTGCCTCGGAAGTCGGGAATAGGCTATGCTGCTAGATACGAGA 719
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 646 AAGTTTTCTGGGCTGGTGTGCCTCGAAAGTCGGGAATAGGCTATGCTGCTAGATACGAGA 705
Query 720 CAGATAAAATGGTTGCTTCTGGTCAAGTTGCTAGCACGGGTGCTGTTGTTATGAACTATG 779
| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 706 CGGATAAAATGGTTGCTTCTGCACAAGTTGCTAGCACAGGTGCTGTTGTTATGAACTATG 765
Query 780 TTCAGAAGATTTCAGATAAGGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCAA 839
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 766 TTCAGAAGATTTCAGATAAGGTTTCACTTGCCACTGACTTCATGTACAACTACTTTTCAA 825
Query 840 GAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGGCTCGTGTGCGGGGTA 899
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 826 GAGATGTAACAGCTAGTGTGGGTTACGACTATATTCTTAGACAGGCTCGTGTGCGGGGAA 885
Query 900 AGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCA 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGATCGATTCCAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCA 945
Query 960 ATTTTCTTCTTTCTGCAGAGCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATTTTCTTCTTTCTGCAGAGCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGAT 1005
Query 1020 TAACAGTTGGTTAAAA-GACCGAATAAAAACCGGCACACAATAAGCCTGGCGCACAGAGC 1078
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1006 TAACAGTTGGTTAAAAAGACTGCATAAAAACCGGCACACAATAAGCCTGGCGCACAGAGC 1065
Query 1079 AGATTGCAGCAGTAGTGGTTTCAGCTGCGAGGATTTCGGTTAAAATTTATTCTATTTCAG 1138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1066 AGATTGCAGCAGTAGTGGTTTCAGCTGC-AGGATTTCGGTTAAAATTTATTCTATTTCAG 1124
Query 1139 TTTAGGCTTTTTGGTGAAGTTGGGAAGATAAACGGTAACGATGTTGTGTTGTTATTTGAG 1198
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1125 TTTAGGCTTTTTGGTGAAGTTGGGAAGATGAACAA-AACGATGTTGTGTTGTTATTTGAG 1183
Query 1199 GTTTAGGATTTGTTT-CCAAGAACCATTTTATAAAAGAA--GAAGAAGCAAATGAGGTTT 1255
||||||||||||||| ||||||| |||||||||||| || ||||||||||||| |||
Sbjct 1184 GTTTAGGATTTGTTTTCCAAGAAGCATTTTATAAAAAAAAAGAAGAAGCAAATG---TTT 1240
Query 1256 TTGTTTTACTTCCTTGCTCTAAGATCTCGTGAACTTCCGAGAGAGGTGTATCATTTCATT 1315
| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1241 T------ACTTCCTTGCTTTAAGACCTCGTGAACTTCC-AGAGAGGTGTATCATTTCATT 1293
Query 1316 TCCTTGCCA-Taaaaaaaa 1333
||||| ||| | |||||||
Sbjct 1294 TCCTT-CCAATTAAAAAAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5