BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20010.1
Length=3399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1 5343 0.0
Ahg474167 jgi|Araly1|474167|fgenesh2_kg.1__4121__AT1G50410.1 1814 0.0
Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447 261 2e-68
> Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1
Length=3385
Score = 5343 bits (2893), Expect = 0.0
Identities = 3238/3404 (95%), Gaps = 25/3404 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTGCTATTGAAATTAGTTCAGGTAGTGATAGTGATGACGAAGTACCACCGCAG 60
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGAGTCTGCTATTGAAATTAGTTCAGGTAGTGATAGTGATGACGAACTACCA---CAG 57
Query 61 CCTGTTTGGCCACAAACTCGAACCAGGATGGATCCCACATGGCTAAGCAGGAGACCTT-T 119
|| || ||||||||| ||||||||||| ||||||| ||||||| | | ||| || |
Sbjct 58 CCCATTAGGCCACAAATTCGAACCAGGACAGATCCCATATGGCTAGGTA-TAGAGATTGT 116
Query 120 GCCTACAGTGGATAGCCATGCTAGAGCTGAACATACAAATCAGGCTCCTCCCAATGGTGC 179
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 117 GCCTACAGTGGATAGCCATGCTAGAGCTGAACATACATATCAGGCTTCTCGCAATGGTGC 176
Query 180 CTCGAGTGATACTTCTCGGCCTGGAGTCTCTAAGCCTTTCACAGGGAATGGGAACACTGT 239
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 177 CTCGAATGATACTTCTCGGCCTGGAGTCTCTAAGCCTTTTACAGGGAATGGGAACACTGT 236
Query 240 AAACTCGAGAATTTCCAGTGGATCTGGTGCTGATTATGTGAGACTGTCTTCTGAGCAAGC 299
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 237 AAACTCGAGAATTTCCAGTGGATCTGGTGCTGATTATGAGAGACTATCGTCTGAGCAAGC 296
Query 300 TCTGAAAAGAACTCTTCCACCCTCTTTTAATTCCCCTCCCCTTCCTGCCAGAAGTGGCAC 359
|||||||||||||||||||||||| |||| ||| |||||| ||||| ||||||||||| |
Sbjct 297 TCTGAAAAGAACTCTTCCACCCTCCTTTAGTTCGCCTCCCTTTCCTTCCAGAAGTGGCGC 356
Query 360 TAACAATATAAGTAATGCTAGTGGAAGTCGTGTTGGTGTGGATTATGAGAGACCATTGTC 419
|||||||||||||||||||||||| ||||| ||||||| |||||||||||||| || |||
Sbjct 357 TAACAATATAAGTAATGCTAGTGGGAGTCGCGTTGGTGCGGATTATGAGAGACTATCGTC 416
Query 420 TCAGCAAGCTCTGAAAAGAACTCTTCCACCCTCTTTTAATCCCCCTCCCCTTCCTTCCAG 479
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TCAGCAAGCTCCGAAAAGAACTCTTCCGCCCTCTTTTAATCCCCCTCCCCTTCCTTCCAG 476
Query 480 AAGTGGCACAAACAATATACGTAATGCTGGTGGGAGTCGCTTTGGTGCCGATTATAGTCA 539
||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct 477 AAGTGGCACTAACAATATAAGTAATGCCAGTGGGAGTCGCTTTGGTGCGGATTATAGTCG 536
Query 540 TCCAGCTGTGTCAGCTGTAGGCAACAAGAGTACCTTTGGTGATCATTATAGTGGAGCCCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCCAGCTGTGTCAGCTGTAGGCAACAAGAGTACCTTTGGTGATCATTATAGTGGAGCCCA 596
Query 600 TGCTGAGATAGGAATTCAACGTGGCGTGAATGGGGTTAGGATCCTGCCTCCATCTCTGAC 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 TGCTGAGATAGGAATTCAACGTGGCATGAATGGGGTTAGGATCCTGCCTCCATCTCTGAC 656
Query 660 GCATGGAACATCTGCTTCTGTTTTGCATCATGCTGGTTCGAGTGATCCAATGCACAGGTT 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 GCATGGAACATCTGCTTCTGTTTTGCATCATGCTGGTTCAAGTGATCCAATGCACAGGTT 716
Query 720 TGGTGGTGGTGAAGATAGGAATCCTGATAACGATGAAAGGCTGGTTTATCAGGCTGCACT 779
|||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 717 TGGTATTGGTGAAGATAGGAATCCTGATAACGATGAGAGGTTGGTTTATCAGGCTGCACT 776
Query 780 ACAGGTTTTGAATCAACCCATGACTGAAAGTGATCTACCTCCTGGTACTCTTTCAGTTCC 839
||||| ||||||||||||||| || ||||| ||||||||||||||| ||||||||||||
Sbjct 777 ACAGGATTTGAATCAACCCATTACCGAAAGCGATCTACCTCCTGGTGTTCTTTCAGTTCC 836
Query 840 TCTTATGAGGCATCAGAAAATTGCGTTGGCATGGATGTTTCAGAAGGAAACAAGTAGTTT 899
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 837 TCTTATGAGGCATCAGAAAATTGCATTGGCATGGATGTTTCAGAAGGAAACAAGAAGTTT 896
Query 900 CAACTGTCCAGGAGGGATACTAGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGAT 959
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAACTGTGCGGGAGGAATACTAGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGAT 956
Query 960 TGCTCTTATCCTAAAGCAAAAGATTGTGTCACAACTGAAGTCCG-AAAGTTCATGCAAGC 1018
|||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 957 TGCTCTTATCCTAAAGCAAAAGATTGTGTCACTACTGAAGTCTGCAAA-TTCATGCAAGC 1015
Query 1019 AAGAAACTGAGGCATTAGTCCTGGATGCTGATGATGAGTCAGACAATGCAAAGCATGAAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAGAAACTGAGGCATTAGTCCTGGATGCTGATGATGAGTCAGACAATGCAAAGCATGAAA 1075
Query 1079 GTGGTAGTCATGTAAAACCAGAGCTCAAGGTTTCAAGCAACAGTGAGACCTCGGTTCTGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTGGTAGTCATGTAAAACCAGAGCTCAAGGTTTCAAGCAACAGTGAGACCTCGGTTCTGA 1135
Query 1139 GTGCAT-GTGGTAATGATGAGAATGACAGTTCAGATATGGAGAAAGCCGAAGATGAAGAA 1197
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1136 GTGC-TAGTGGTAATGATGAGAATGACAGTTCAGATATGGAGAAAGCCAAAGATGAAGAA 1194
Query 1198 GCTAATTCTTCAACACGAGCATTTCAGTGGAAGAGACCAGCTGCTGGTACATTAATTGTT 1257
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1195 GCAAATTCTTCAACACGAGCATTTAAGTGGAAGAGACCAGCTGCTGGTACATTAATTGTT 1254
Query 1258 TGCCCAGCGAGTGTTGTAAGGCAGTGGGCAAGAGAGCTTGATGAGAAGGTTTCTGAAGAA 1317
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGCCCAGCGAGTGTTGTACGGCAGTGGGCAAGAGAGCTTGATGAGAAGGTTTCTGAAGAA 1314
Query 1318 TCCAAACTTTCTGTGTTAGTCTACCATGGTAGTAATAGGACCAAAGATCCTAATGAATTA 1377
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGGAAACTTTCTGTGTTAGTCTACCATGGTAGTAATAGGACCAAAGATCCTAATGAATTA 1374
Query 1378 GCAGAATACGATGTGGTTGTGACAACGTACGCTATTGTTACTAATGAAGCTCCCAACAAA 1437
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1375 GCAGAATACGATGTGGTTGTGACAACTTACGCTATTGTTACTAATGAAGCTCCCAAAAAA 1434
Query 1438 TTCTTGGTGGATGAGGATGAGAACGATGaaaaaaaTACTGACAGATATGGTCTTGCCTCT 1497
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1435 TTCTTGGTGGATGAGGATGAGAACGATGAAAAAAGTACTGACAAATATGGTCTTGCCTCT 1494
Query 1498 GGCTTCTCCAACAATAAGAAACGGAAAGTCGTGGTGGGTGCTAGTAAGAAGAGTAAAAGA 1557
|||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |
Sbjct 1495 GGCTTCTCCAACAATAAGAAGCGGAAAGTCGCGGTGGGTGCCAGTAAGAAGAGTAAAAAA 1554
Query 1558 AGAGGTAGAAAAAGCACTAACGATACTTCTTCTGAGCCTGATTGTGGTCCTCTAGGAAAG 1617
|||||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||
Sbjct 1555 AGAGGTAGAAAAAGCACTGACAATTCTTCTTCTGAGCCCGATTGTGGTGCTCTAGGAAAA 1614
Query 1618 GTTGGGTGGTTCAGAATAGTACTAGATGAAGCTCAGACAATTAAGAACTATAGAACACAA 1677
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1615 GTTGGGTGGTTCAGAATAGTACTAGATGAAGCTCAGACAATAAAGAACCATAGAACACAA 1674
Query 1678 ATGGCAAGATCATGTTGCACTCTTCGAGCCAAAAGGAGGTGGTGCTTGTCTGGAACACCA 1737
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GTGGCAAGATCCTGTTGCACTCTTCGAGCCAAAAGGAGGTGGTGCTTGTCTGGAACACCA 1734
Query 1738 ATACAAAATACGATTGATGATTTATATAGCTATTTCAGGTTTCTTAGATATGATCCATAT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 ATACAAAATACGATTGATGATTTATATAGCTATTTCAGGTTTCTTAGATATGATCCATAT 1794
Query 1798 GCGGTGTACAAGTCATTTTACAGTACAATCAAGGTTCCAATTTCCAGAAATTCTTGTCAA 1857
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GCGGCGTACAAGTCATTTTACAGTACAATCAAGGTTCCAATTTCCAGAAATTCTTGTCAA 1854
Query 1858 GGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGCACCAAAGGAACA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGCACCAAAGGAACA 1914
Query 1918 TTGCTTGATGGGAAACCCATAATTAATCTACCTCCAAAGGTAGTAAATTTGAGCCA-GGT 1976
|| ||||||||||||||||| ||||||||||||||||| ||| |||||||| || |||
Sbjct 1915 TTACTTGATGGGAAACCCATTATTAATCTACCTCCAAAAAAAGTTAATTTGAG-CACGGT 1973
Query 1977 AGACTTTTCAGTGGCTGAGCGCTCTTTCTACAAGAAGCTTGAAGCTGATTCACGTTCACA 2036
||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1974 AGATTTTTCAGTGGAAGAGCGCTCTTTCTACAGGAAGCTTGAAGCGGATTCACGTTCACA 2033
Query 2037 GTTCAAGGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCTGTT 2096
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2034 GTTCAAGGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCTGAT 2093
Query 2097 GCTTTTGCGACTACGCCAAGCTTGTGACCACCCACAACTTGTTAAAAG-ATATAACTCAG 2155
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2094 GCTTTTGCGACTCCGCCAAGCTTGTGACCACCCACAACTTGTT-AAAGTATATAACTCAG 2152
Query 2156 ATCCTGTTGGAAAAGTATCAGAAGCAGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAGCA 2215
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 ATCCTGTTGGAAAAGAATCAGAAGCAGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAGCA 2212
Query 2216 GACTGATCAATCGCTTAGAGTCATCATCTGCCATCTGCTATGAGTGCAATGAGCCACCAG 2275
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2213 GACTGATCAATCGCTTAGAGTTATCATCTGCCATCTGCTATGAGTGCAATGAGCCACCAG 2272
Query 2276 AAAAACCTGTTGTTACGTTGTGTGGCCATATATTTTGCTATGAATGTGTTTTAGAATACA 2335
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2273 AAAAACCTGTTGTTAAGTTGTGTGGCCATGTATTTTGCTATGAATGTGTTTTAGAATACA 2332
Query 2336 TAACTGGGGATGAGAACACGTGCCCTGTACCGAGATGCAAACAACAGCTTGCGCGTGATG 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 TAACTGGGGATGAGAACACGTGCCCTGTACCGAGATGCAAACAACAGCTTGCGCGTGATG 2392
Query 2396 TTGTTTTCTCTGAATCTTCTCTTAGAAATTGCACTTCTGATGATTCGGGCTGTAGTTCCT 2455
||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2393 TTGTTTTCTCTGAATCTTCGCTTAGAAATTGCATTTCTGATGATTTGGGCTGTAGTTCCT 2452
Query 2456 CTCATGATAATGGTCTTGATAGATCGGTATTTCAAAAAAGAGACTTTTGTTCATCAAAAA 2515
| |||||||| ||||| ||||||||||| ||| ||||||| || ||||||||||||||||
Sbjct 2453 CGCATGATAAAGGTCTCGATAGATCGGTTTTTGAAAAAAGCGAGTTTTGTTCATCAAAAA 2512
Query 2516 TTAAAGCTGTCCTCGATATCCTGCAGTCGCTTTCCCAACCAGACAGTCCAAACTCAGCTC 2575
| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 2513 TCAAAGCTGTCCTCGATATCCTGCAGTCGCTTTCCAAACAAGACACTCCAAACTCAGCTC 2572
Query 2576 AGCATGGTCAAATGCCATCTTCCTCACGGCCATATGATGACGATGATGTTACCATTGTAG 2635
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2573 AGCATGGTCAAATGCCATCTTCCTCACGGCCGTATGATGACGATGATGTTACCATTGTAG 2632
Query 2636 AGCCAATGCGTCTTCACTCATCTTCACCTAGCCAGGGGGCAGTAAAGACGATAATATTTT 2695
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2633 AGCCAAAGCGTCTTCACTCATCTTCACCTAGCCAGGGGGCAGTAAAAACGATAATATTTT 2692
Query 2696 CTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTGCGTATTCTTGAAAGTGGTATTGAAT 2755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 CTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTGCGTATTCTTGAAAGTGGTATTGAAT 2752
Query 2756 TCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTTAAAGAATTCA 2815
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2753 TCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTAAAAGAATTCA 2812
Query 2816 GTAAAAAACCAGATGTAAAGGTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTGA 2875
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2813 GTAAAAATCCAGATGTAAAGGTGATGCTGATGTCTCTAAAAGCTGGAAACCTTGGGCTGA 2872
Query 2876 ATATGGTAGCTGCATGTCATGTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAAG 2935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2873 ATATGGTAGCTGCATGTCATGTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAAG 2932
Query 2936 ATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGCA 2995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2933 ATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGCA 2992
Query 2996 TAACTATAAAAGACACCGTTGAGGATAGAATTTTGAAGCTTCAGGAAGAGAAAAGGACAA 3055
| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2993 TTACTATAAAAGACACCGTTGAGGATAGAATTTTGACGCTTCAGGAAGATAAAAGGACAA 3052
Query 3056 TGGTTGCATCGGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCGACACGTCTAACAGTAG 3115
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3053 TGGTTGCATCTGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCAACACGTCTAACAGTAG 3112
Query 3116 ACGATCTCAAGTATCTGTTTATGGTGTAGACTACTCGTTGTATGGTCTAAGCGTAGCCTT 3175
|||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 3113 ACGATCTCAAATATCTGTTTATGTTGTAGACTACTCGTTGTCTGGTCTACGCGTAGCCTT 3172
Query 3176 CTAATCGCCTCTTGAACTAGGTTGCTTAGTACAGTACATATGGGAGATTTAGCCCAGAAT 3235
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 3173 CTAATCGCCTCTTGAACTAGGTTGCTTAGTACAGTATATATGGGAGATTAAGCCCAGAAT 3232
Query 3236 TTTGATCAGGAAGAAACCTCTAGCTGCTTTTGTAATGGATATCCAATACTGTGGC-ACTC 3294
||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||
Sbjct 3233 TTTGATCAGGAAGAAACCTCTAGCTGCTTTTGTAATGAATTTCCAATACTGTGGCTA-TC 3291
Query 3295 CTTTGGTTTTGTAAGGTTTGAACCCAATCTATGCATTTTTGGTGTTTCCAAAGTGCATCG 3354
||||||||||| ||||||||||||| |||||||||||||| ||| | | | | |
Sbjct 3292 TTTTGGTTTTGTGAGGTTTGAACCCAGTCTATGCATTTTTG-TGTG-C-A---T---T-G 3341
Query 3355 ATTGGAAACAGGCCATAAGTAAATAACTAAAATCGGTTCATGGT 3398
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3342 ATTGGAAACAGGCCATATGTAAATAACTAAAATCGGTTCATGGT 3385
Score = 185 bits (100), Expect = 2e-45
Identities = 129/143 (90%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 264 TGGTGCTGATTATGTGAGACTGTCTTCTGAGCAAGCTCTGAAAAGAACTCTTCCACCCTC 323
|||||| ||||||| |||||| || ||| ||||||||| ||||||||||||||| |||||
Sbjct 390 TGGTGCGGATTATGAGAGACTATCGTCTCAGCAAGCTCCGAAAAGAACTCTTCCGCCCTC 449
Query 324 TTTTAATTCCCCTCCCCTTCCTGCCAGAAGTGGCACTAACAATATAAGTAATGCTAGTGG 383
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 450 TTTTAATCCCCCTCCCCTTCCTTCCAGAAGTGGCACTAACAATATAAGTAATGCCAGTGG 509
Query 384 AAGTCG-TGTTGGTGTGGATTAT 405
||||| | |||||| |||||||
Sbjct 510 GAGTCGCT-TTGGTGCGGATTAT 531
Score = 174 bits (94), Expect = 3e-42
Identities = 127/143 (89%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 393 TGGTG-TGGATTATGAGAGACCATTGTCTCAGCAAGCTCTGAAAAGAACTCTTCCACCCT 451
||||| | ||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 261 TGGTGCT-GATTATGAGAGACTATCGTCTGAGCAAGCTCTGAAAAGAACTCTTCCACCCT 319
Query 452 CTTTTAATCCCCCTCCCCTTCCTTCCAGAAGTGGCACAAACAATATACGTAATGCTGGTG 511
| |||| | | |||||| ||||||||||||||||| | ||||||||| |||||||| |||
Sbjct 320 CCTTTAGTTCGCCTCCCTTTCCTTCCAGAAGTGGCGCTAACAATATAAGTAATGCTAGTG 379
Query 512 GGAGTCGCTTTGGTGCCGATTAT 534
|||||||| ||||||| ||||||
Sbjct 380 GGAGTCGCGTTGGTGCGGATTAT 402
> Ahg474167 jgi|Araly1|474167|fgenesh2_kg.1__4121__AT1G50410.1
Length=3242
Score = 1814 bits (982), Expect = 0.0
Identities = 1695/2036 (83%), Gaps = 62/2036 (3%)
Strand=Plus/Plus
Query 1146 TGGTAATGATGAGAATGACAGTTCAGATATGGAGAAAGCCGAA--GATGAAGAAGCTAAT 1203
||||| || || ||||| ||||||| || |||||||| || || |||||||| | |
Sbjct 1108 TGGTAGTGGTGTGAATGGTAGTTCAGGCATAAAGAAAGCC-AAGGGA-GAAGAAGCGAGT 1165
Query 1204 TCTTCAACACGAGC-ATTTC-AGTGGAAGAGACCAGCTGCTGGTACATTAATTGTTTGCC 1261
||||||||| || | ||| | ||||| ||||||||||||| || ||||||||||| |
Sbjct 1166 ACTTCAACAC--GCAAATTCAACAGGAAGCGACCAGCTGCTGGCACTTTAATTGTTTGTC 1223
Query 1262 CAGCGAGTGTTGTAAGGCAGTGGGCAAGAGAGCTTGATGAGAAGGTTTCTGAAGAATCCA 1321
|||| |||||||| |||||||||||||||| ||||||||||| ||| |||| ||| |||
Sbjct 1224 CAGCAAGTGTTGTGCGGCAGTGGGCAAGAGAACTTGATGAGAAAGTTACTGATGAAGCCA 1283
Query 1322 AACTTTCTGTGTTAGTCTACCATGGTAGTAATAGGACCAAAGATCCTAATGAATTAGCAG 1381
|||||||||| ||| | ||||| ||| |||| || ||||||||||||| |||| |||||
Sbjct 1284 AACTTTCTGTTTTAATATACCACGGTGGTAACAGAACCAAAGATCCTATTGAACTAGCAA 1343
Query 1382 AATACGATGTGGTTGTGACAACGTACGCTATTGTTACTAATGAAGCTCCCAA-CAAATTC 1440
|||| ||||||||| ||||||| |||||||||||| | ||||||| ||| || | || |
Sbjct 1344 AATATGATGTGGTTATGACAACTTACGCTATTGTTTCAAATGAAGTTCCAAAGC-AACCC 1402
Query 1441 TTGGTGGATGAGGATGAGAACGATGaaaaaaaTACTGACAGATATGGTCTTGCCTCTGGC 1500
|||||||||| |||||||| |||||||||||| |||| | ||| ||||| || ||||||
Sbjct 1403 CTGGTGGATGACGATGAGAATGATGAAAAAAATTCTGAAAAATACGGTCTCGCTTCTGGC 1462
Query 1501 TTCTCCAACAATAAGAAACGG-AAAGTCGTGGTGGGTGCTAGTAAGAAGAGTAA-AAGAA 1558
||||||| ||||||||||||| ||| | || |||||| ||| |||||| ||||| || ||
Sbjct 1463 TTCTCCATCAATAAGAAACGGAAAAAT-GTAGTGGGTACTACTAAGAAAAGTAAGAA-AA 1520
Query 1559 GAGGT-AGAA-AAAGCACTAACGATACTTCTTCTGAGCCTGATTGTGGTCCTCTAGGAAA 1616
|||| |||| || | || ||||| |||| ||||| ||||| | |||| |||||| |||
Sbjct 1521 AAGGTAAGAATAATG--CTGACGATTCTTCGTCTGACCCTGACTCTGGTACTCTAGCAAA 1578
Query 1617 GGTTGGGTGGTTCAGAATAGTACTAGATGAAGCTCAGACAATTAAGAACT-ATAGAACAC 1675
||||||||||||||| | ||||||||||||||||| ||||||||||| | ||||||| |
Sbjct 1579 AGTTGGGTGGTTCAGAGTTGTACTAGATGAAGCTCAAACAATTAAGAA-TCATAGAACCC 1637
Query 1676 AAATGGCAAGATCATGTTGCACTCTTCGAGCCAAAAGGAGGTGGTGCTTGTCTGGAACAC 1735
| |||||||| |||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 1638 AGGTGGCAAGAGCATGTTGCGGTCTTCGAGCCAAAAGGAGATGGTGTTTGTCTGGAACAC 1697
Query 1736 CAATACAAAATACGATTGATGATTTATATAGCTATTTCAGGTTTCTTAGATATGATCCAT 1795
| ||||||||||| || ||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 1698 CGATACAAAATACAATAGATGATTTATACAGCTATTTCAGGTTTCTAAAATATGATCCAT 1757
Query 1796 ATGCGGTGTACAAGTCATT-TTACAGTACAATCAAGGTTCCAATTTCCAGAAATT-CTTG 1853
| || |||||||||||||| | || | ||| |||| ||||||||||||||||| | |
Sbjct 1758 ACGCTGTGTACAAGTCATTCTGCCACCA-AATTAAGGGTCCAATTTCCAGAAATTCCCT- 1815
Query 1854 TCAAGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGCACCAAAGG 1913
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1816 TCATGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGTACGAAAGG 1875
Query 1914 AACATTGCTTGATGGGAAACCCATAATTAATCTACCTCCAAAGGTAGTAAATTTGAGCCA 1973
||||||||||||||| | || |||||||||||||| |||||| | | ||||||||| |
Sbjct 1876 AACATTGCTTGATGGCCAGCCTATAATTAATCTACCACCAAAGACAATTAATTTGAGCAA 1935
Query 1974 GGTAGACTTTTCAGTGGCTGAGCGCTCTTTCTACAAGAAGCTTGAAGCTGATTCACGTTC 2033
|| |||||||| || | ||||| |||||||||| |||||||||| |||||||||||||
Sbjct 1936 CGTGGACTTTTCGGTAGAGGAGCGGTCTTTCTACATGAAGCTTGAATCTGATTCACGTTC 1995
Query 2034 ACAGTTCAAGGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCT 2093
||||||||||| ||||||| ||| |||||||||| ||||||||| ||||| ||||||||
Sbjct 1996 TCAGTTCAAGGCATATGCTGCTGCAGGAACTTTGAATCAAAACTATGCAAACATTCTTCT 2055
Query 2094 GTTGCTTTTGCGACTACGCCAAGCTTGTGACCACCCACAACTTGTTAAAAGATATAACTC 2153
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2056 CATGCTCTTGCGACTACGCCAAGCTTGTGACCACCCCCAACTTGTTAAAAGATATAACTC 2115
Query 2154 AGATCCTGTTGGAAAAGTATCAGAAGCAGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAG 2213
|||| ||||||||||||||||||||| ||| |||| ||| ||||||| |||||||||
Sbjct 2116 AGATTCTGTTGGAAAAGTATCAGAAGAAGCTGTTAAAAGGCTCCCTAAAGAGGCTCGATT 2175
Query 2214 CAGACTGATCAATCGCTTAGAGTCATCATCTGCCATCTGCTATGAGTGCAATGAGCCACC 2273
|| ||| ||| ||||||||| || || || ||||||| | || ||| |||| |||||
Sbjct 2176 TAGCCTGCTCAGTCGCTTAGAATCGTC-TC--CCATCTGTTGTGTCTGCCATGATCCACC 2232
Query 2274 AGAAAAAC-CTGTTGTTACGTTGTGTGGCCATATATTTTGCTATGAATGTGTTTTAGAAT 2332
|||| | | |||||||||| ||||||||||||||||| |||||| | ||||| | ||| |
Sbjct 2233 AGAAGA-CTCTGTTGTTACATTGTGTGGCCATATATTCTGCTATCAGTGTGTATCAGATT 2291
Query 2333 ACATAACTGGGGATGAGAACACGTGCCCTGTACCGAGATGCAAACAACAGCTTGCGCGTG 2392
| || || || |||||| |||||||||||| || ||||||| | |||||||||||| ||
Sbjct 2292 ATATCACAGGAGATGAGGACACGTGCCCTGCGCCTAGATGCAGAGAACAGCTTGCGCATG 2351
Query 2393 ATGTTGTTTTCTCTGAATCTTCTCTTAGAAATTGCACTT-CTGATGATTCGGGCTGTAGT 2451
|||||||||||||| ||||| | ||||||| ||||| || ||||||||| ||| ||||||
Sbjct 2352 ATGTTGTTTTCTCTAAATCTACCCTTAGAAGTTGCA-TTGCTGATGATTTGGGTTGTAGT 2410
Query 2452 TCCTCTCATGATAATGGTCTTGATAGATCGGTATTTCAAAAAAGAGACTTTTGTTCATCA 2511
||||| || ||||| || | ||| | | | || ||||| || | || ||| ||||||||
Sbjct 2411 TCCTCACAGGATAAAGGGCATGACAAAGCAGTTTTTCAGAACGGCGAGTTTAGTTCATCA 2470
Query 2512 AAAATTAAAGCTGTCCTCGATATCCTGCAGTCGCTTTCCCAACCA-GACAGTCCAAACTC 2570
|| || ||||||||| | ||||| |||||||| ||||| ||||| | ||||||||||||
Sbjct 2471 AAGATCAAAGCTGTCTTAGATATTCTGCAGTCACTTTCT-AACCAAGGCAGTCCAAACTC 2529
Query 2571 AGCTCAGCATGGTCAAATGCCATCTTCCTCAC-G--GCC--AT-ATGATGACGATGATG- 2623
| | ||| ||||||||||| | |||||||| | | ||| || ||||||| |||||||
Sbjct 2530 AACACAGAATGGTCAAATGGCTTCTTCCTCGCAGCAGCCGTATGATGATGATGATGATGA 2589
Query 2624 T--T-A---C-C-ATTGTAGAGCCAAT-GCGTCTTCACTCATCTTCACCTAGCCAGGGGG 2674
| | | | | ||||| ||| || | |||| || ||| || | ||| || | ||
Sbjct 2590 TGATGATGTCACCATTGTCGAGA-AACCGAGTCTGCAGTCAACTCCTTCTAACC-GAGGA 2647
Query 2675 C-AGTAAAGACGATAATATTTTCTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTG-CG 2732
| | |||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 2648 CCAATAAAAACGATTATATTTTCCCAGTGGACTGGTATGCTTGACTTGGTCGAGCTATC- 2706
Query 2733 TATTCTTGAAAGTGGTATTGAATTCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAG 2792
| | ||||| | |||| |||||||||||||||||||| |||||||||||| || ||
Sbjct 2707 TCTAAATGAAAATAGTATAGAATTCAGAAGATTAGATGGTACAATGAGTCTAATTGCCAG 2766
Query 2793 AGACAGGGCGGTTAAAGAATTCAGTAAAAAACCAGATGTAAAGGTGATGCTGATGTCGCT 2852
|||||| || || ||||||||||| || | ||||| ||||| |||||| | ||||| |
Sbjct 2767 AGACAGAGCTGTGAAAGAATTCAGCAACGATCCAGAGGTAAAAGTGATGATAATGTCTTT 2826
Query 2853 AAAAGCTGGAAACCTTGGGCTGAATATGGTAGCTGCATGTCATGTTATTCT-CTTGGATC 2911
|||||||||||| ||||||||||||||| | |||||||||||||| ||||| |||| |||
Sbjct 2827 AAAAGCTGGAAATCTTGGGCTGAATATGATTGCTGCATGTCATGTCATTCTTCTTG-ATC 2885
Query 2912 TTTGGTGGAATCCAACTACCGAAGATCAGGCGATTGATCGTGCACATCGTATTGGACAAA 2971
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 2886 TTTGGTGGAATCCAACTACTGAAGATCAGGCTATTGATCGAGCACATCGTATTGGACAAA 2945
Query 2972 CTCGGCCAGTTACTGTAACTCGCATAACTATAAAAGACACCGTTGAGGATAGAATTTTGA 3031
|||| ||||||||||||||||| || || |||||| | || || |||||||||||||||
Sbjct 2946 CTCGACCAGTTACTGTAACTCGTATTACGATAAAAAATACTGTGGAGGATAGAATTTTG- 3004
Query 3032 AGCT-TC-AGGAAGAGAAAAGGACAATGGTTGCATCGGCCTTTGGTGAAGAACATGGTGG 3089
||| || ||||||||||||| | ||||||||| || |||||||||||||| ||||||||
Sbjct 3005 -GCTCTCCAGGAAGAGAAAAGAAAAATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGG 3063
Query 3090 AAGCTCTGCGACACG-TCTAACAGTAGACGATCTCAAGTATCTGTTTATGGTGTAG 3144
||||||||| || || | ||||||| || |||||||| ||||| || |||||||||
Sbjct 3064 AAGCTCTGCAACTCGAT-TAACAGTTGATGATCTCAAATATCTATTCATGGTGTAG 3118
> Ahg318431 jgi|Araly1|318431|fgenesh1_pm.C_scaffold_3001447
Length=1893
Score = 261 bits (141), Expect = 2e-68
Identities = 253/306 (83%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 2836 GTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTGAATATGGTAGCTGCATGTCAT 2895
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1546 GTGATGCTGATGTCTCTTAAAGCTGGAAACCTTGGATTGAATATGGTAGCTGCATGTCAT 1605
Query 2896 GTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAAGATCAGGCGATTGATCGTGCA 2955
|||||||| ||||| ||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 1606 GTTATTCTATTGGACCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCT 1665
Query 2956 CATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGCATAACTAT-AAAAGACACCGT 3014
|||||||| |||||||||||| | ||||| || ||||| || | || |||| | |||||
Sbjct 1666 CATCGTATCGGACAAACTCGGACTGTTACAGTTACTCGTATTGCCATCAAAA-ATACCGT 1724
Query 3015 TGAGGATA-GAATTTTGAAGCTTCAGGAAGAGAAA-AGGA-CAATGGTTGCATCGGCCTT 3071
|||||| | ||||||||| ||||||||| | || |||| || || ||||||| || ||
Sbjct 1725 TGAGGA-ACGAATTTTGACTCTTCAGGAAC-GTAAGAGGAACATTG-TTGCATCTGCATT 1781
Query 3072 TGGTGAAGAA-CATGGTGGAAGCTCTGCGACACGTCTAACAGTAGACGATCTC-AAGTAT 3129
|||||| || |||||| ||| ||||||| | |||||| |||| ||||| || |||
Sbjct 1782 GGGTGAA-AATCATGGTAAAAGTTCTGCGATTCAACTAACACTAGAAGATCTTGAA-TAT 1839
Query 3130 CTGTTT 3135
|| |||
Sbjct 1840 CTATTT 1845
Score = 172 bits (93), Expect = 1e-41
Identities = 188/233 (81%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 766 TATCAGGCTGCACTACAGGTTTTGAATCAACCCATGACTG-AAAGTGATCTACCTCCTGG 824
|||||||||||| |||| | | |||| ||||| | ||| | |||| ||||||||||||||
Sbjct 82 TATCAGGCTGCATTACAAGATCTGAAACAACCAAAGACCGAAAAG-GATCTACCTCCTGG 140
Query 825 TACTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATTGCGTTGGCATGGATGTTTCAGAA 884
| |||| ||||||||||||||||||||||||||||||| |||| ||||||| | ||||
Sbjct 141 TGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGGAATGGATGCGTAAGAA 200
Query 885 GGAAACAAGTAGTTT-CAACTGTCCAGGAGGGATACTAGCAGATGATCAGGGACTTGGTA 943
|||| ||| || || ||| ||||||||| ||||||||||||||||||||||||
Sbjct 201 AGAAAAAAGAAGCAGGCAT-TGTTTGGGAGGGATATTAGCAGATGATCAGGGACTTGGTA 259
Query 944 AGACGGTCTCGACGAT-TGCTCTTATCCTAA-AGCAAAAGATTGT-GTCACAA 993
| || |||| || || | ||||||| ||| | |||||| ||| |||||||
Sbjct 260 AAACAATCTCTACCATCT-CTCTTATTCTATTA-CAAAAG-TTGAAGTCACAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128330136156
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5