BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20015.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929919 jgi|Araly1|929919|scaffold_302376.1 2278 0.0
> Ahg929919 jgi|Araly1|929919|scaffold_302376.1
Length=1457
Score = 2278 bits (1233), Expect = 0.0
Identities = 1385/1457 (95%), Gaps = 15/1457 (1%)
Strand=Plus/Plus
Query 191 TGGCTCTGGCGTTGTAAACAATGctcctccctctcttcttcttc-t-ttc-tccat-ctc 246
||||| |||||||||||||||||||||||||||||||||||||| | ||| ||| | |||
Sbjct 1 TGGCTGTGGCGTTGTAAACAATGCTCCTCCCTCTCTTCTTCTTCTTCTTCTTCC-TCCTC 59
Query 247 catctccatctctcttcttcttcttcaatctccttccCTGATTTTCAAATCATCGACGTT 306
|||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 CATCTCCA--TCT-TTCTTCTTCCTCAATCTCCTTCCCTGATTTTCAAATCATCGACGTT 116
Query 307 TTACAACCTCCTCTCACCGTCACTGCAACTCTTCCCGATTTCAACAACACCCATTTCTCC 366
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 117 TTACAACCTCCTCTCACCGTCACCGGAACTCTTCCCGATTTCAACAACACCCATTTCTCC 176
Query 367 GATGAATCCAGTTCTAAGTACACTCTCCGTCTTCTCCACCGCGACAGATTCCCTTCAGTC 426
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 177 GATGAATCCAATTCTAAATACACTCTCCGTCTTCTCCACCGCGACAGATTCCCTTCCGTC 236
Query 427 ACTTACCGTAACCACCACCACCGTCTCCATGCTCGTATGCGCAGAGACACAGACAGAGTC 486
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 237 ACTTACCGTAACCACCACCACCGTCTCCATGCTCGTATGCGTAGAGATACAGACAGAGTC 296
Query 487 TCCGCCATTCTCCGCCGCATTTCTGGGAAA---GTTATACCTTCTTCCGATTCTAGATAC 543
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 297 TCCGCCATTCTCCGCCGCATTTCTGGGAAAGTTGTTGTAGCTTCTTCCGATTCTAGATAC 356
Query 544 GAGGTTAACGATTTTGGGTCCGATATTGTTTCCGGTATGGATCAAGGAAGTGGTGAGTAT 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 GAGGTTAACGATTTTGGGTCCGATGTTGTTTCCGGTATGGATCAAGGAAGTGGTGAGTAT 416
Query 604 TTCGTCAGAATCGGCGTCGGAAGTCCTCCGAGAGATCAGTACATGGTCATTGATTCCGGT 663
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 417 TTCGTTAGAATCGGCGTCGGAAGTCCGCCGAGAGATCAGTACATGGTCATTGACTCCGGT 476
Query 664 AGCGATATGGTTTGGGTTCAATGTCAGCCTTGTAAGCTCTGTTACAAACAATCCGACCCG 723
|| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 477 AGTGATATGGTTTGGGTTCAGTGCCAGCCTTGTAAGCTCTGTTATAAACAATCCGACCCG 536
Query 724 GTTTTTGACCCGGCTAAATCCGGGTCTTACACTGGAGTCTCTTGTGGCTCTTCCGTCTGT 783
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 537 GTTTTTGACCCGGCTAAATCCGGGTCTTACACTGGAGTCTCTTGCGGTTCTTCTGTCTGT 596
Query 784 GACCGGATTGAAAACTCCGGTTGTCACTCCGGTGGGTGCCGTTACGAGGTCATGTACGGA 843
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GACCGGATTGAAAACTCCGGCTGTCACTCCGGTGGGTGCCGTTATGAGGTCATGTACGGA 656
Query 844 GACGGGTCTTACACG-AAGGGAACGTTAGCTCTCGAAACGCTGACGTTTGCTAAGACGGT 902
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 657 GACGGGTCTTACACGAAAGGG-ACGTTAGCTCTTGAAACGCTGACGTTTGCTAAGACGGT 715
Query 903 GGTTAGAAACGTTGCGATGGGATGTGGTCACCGGAATAGAGGAATGTTTATTGGAGCTGC 962
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 GGTTAGAAACGTTGCCATGGGATGTGGTCACCGGAACAGAGGAATGTTTATTGGAGCTGC 775
Query 963 CGGTTTATTGGGTATCGGAGGCGGTTCAATGTCGTTTGTGGGTCAATTAAGCGGTCAAAC 1022
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 TGGTTTACTGGGTATTGGAGGCGGTTCAATGTCGTTTGTGGGTCAATTGAGCGGTCAAAC 835
Query 1023 CGGTGGTGCGTTCGGTTATTGTTTAGTGAGTCGTGGCACTGACTCGACCGGTTCATTGGT 1082
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 836 CGGCGGTGCGTTCGGTTATTGTTTAGTGAGTCGAGGCACCGACTCGACCGGTTCATTGGT 895
Query 1083 ATTCGGGCGGGAAGCGTTGCCCGTTGGTGCCTCGTGGGTCCCGTTGGTCCGGAACCCGCG 1142
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 896 ATTCGGGCGGGAAGCTTTGCCCGTTGGTGCCTCGTGGGTACCGTTGGTCCGGAACCCACG 955
Query 1143 GGCTCCAAGTTTTTACTACGTTGGGCTCAAGGGCCTTGGAGTAGGAGGCGTCCGGATTCC 1202
|||||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||
Sbjct 956 GGCTCCGAGTTTTTACTATGTTGGGCTCAAGGGCCTCGGGGTCGGAGGCGTCCGGATTCC 1015
Query 1203 GTTACCGGATGGTGTTTTTGACCTGACTGAAACCGGTGACGGTGGTGTGGTTATGGATAC 1262
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1016 GTTACCGGATGGTGTCTTTGACCTGACGGAAACCGGTGACGGCGGTGTGGTTATGGATAC 1075
Query 1263 CGGAACAGCCGTCACAAGACTTCCCACGGCG-GCTTACGTCGCTTTTCGAGATGGATTCA 1321
|||||| ||||||||||| ||||| |||| | ||||| | ||| ||||||||||||||||
Sbjct 1076 CGGAACCGCCGTCACAAGGCTTCCGACGG-GTGCTTATGCCGCATTTCGAGATGGATTCA 1134
Query 1322 AGTCGCAGACAGCGAATTTGCCGCGGGCTTCCGGTGTATCGATATTCGACACGTGTTATG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGTCGCAGACAGCGAATTTGCCGCGGGCTTCCGGTGTATCGATATTCGACACGTGTTATG 1194
Query 1382 ATCTGTCAGGGTTTGTTTCGGTACGAGTCCCGACCGTGTCGTTCTATTTCACGGAAGGTC 1441
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATCTGTCAGGATTTGTTTCGGTACGAGTCCCGACCGTGTCGTTCTATTTCACGGAAGGTC 1254
Query 1442 CGGTTTTGACATTACCGGCGAGGAATTTTCTGATGCCGGTGGATGATTCGGGAACGTATT 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1255 CGGTTTTGACATTACCGGCGAGGAATTTTCTGATGCCGGTGGATGATTCGGGGACATATT 1314
Query 1502 GTTTTGCGTTTGCGGCGTCTCCGACGGGTTTGTCAATAATAGGGAACATACAACAAGAAG 1561
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1315 GTTTTGCGTTTGCGGCGTCTCCGACGGGTTTGTCGATAATAGGGAACATACAACAAGAAG 1374
Query 1562 GGATTCAAGTATCTTTCGACGGAGCCAATGGCTTTGTTGGTTTTGGCCCCAACGTTTGCT 1621
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1375 GGATTCAAGTATCTTTCGACGGAGCCAATGGCTTTGTTGGGTTTGGCCCCAACGTTTGCT 1434
Query 1622 AGCGGTTAAGATAGAGA 1638
||||||||| |||||||
Sbjct 1435 AGCGGTTAAAATAGAGA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5