BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20020.1 Length=1812 Score E Sequences producing significant alignments: (Bits) Value Ahg479521 jgi|Araly1|479521|fgenesh2_kg.3__2222__AT3G20020.1 2876 0.0 Ahg342120 jgi|Araly1|342120|fgenesh1_pg.C_scaffold_3001883 322 6e-87 Ahg925524 jgi|Araly1|925524|scaffold_201085.1 150 3e-35 > Ahg479521 jgi|Araly1|479521|fgenesh2_kg.3__2222__AT3G20020.1 Length=1809 Score = 2876 bits (1557), Expect = 0.0 Identities = 1733/1816 (95%), Gaps = 20/1816 (1%) Strand=Plus/Plus Query 2 AAATTACATAATTACCAAAGaaaaaaaTGA-tttttttttAGGGGTTTTAATTA-GTTAG 59 ||||||||||||||||||||||||||| | ||||||||||| ||| ||| | | Sbjct 1 AAATTACATAATTACCAAAGAAAAAAAAAACAAATTTTTTAGGGG-ATTAGTTAGGAAAA 59 Query 60 AAAAAAGGAGGCTCCTTTGGAAGAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 119 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 60 AAAAAAAGAGGCTCCTTT-G--GAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 116 Query 120 CAGAGAAAG----TCTCTCTCTGTGTCTAACTGaaaaaaaTGCAATCTGGCGGCGATTTC 175 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 117 CAGAGAAAGTCTCTCTCTCTCTGTGTTTAACTGAAAAAAATGCAATCTGGCGGCGATTTC 176 Query 176 AGCAACGGTTTCCACGGAGACCATCACCGCGAGCTTGAATTGGAAGACAAGCAAGGCCCC 235 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| Sbjct 177 AGCAACGGTTTCCACGGCGACCAACACCGCGAGCTTGAATTGGAAGACAAGCAAGTCCCC 236 Query 236 AGTCTCAGCTCTTTTGGCCGAGCCAAGAAGCGCAGTCACGCCGGAGCTCGTGACCCTCGA 295 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || Sbjct 237 GGTCTCAGCTCTTTTGGCCGAGCCAAGAGGCGCAGTCACTCCGGAGCTCGTGACCCTAGA 296 Query 296 GGCGGTCTCGCCAATGTGCTTAGGGTTTCTGACCAGCTTGGCGAGCACAAGTCATTGGAG 355 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| Sbjct 297 GGCGGTCTCGCCAATGTGCTTAGGGTTTCCGACCAGCTTGGCGAGCAGAAGTCACTGGAG 356 Query 356 ACTTCGGAATCTTCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTATTTTCATTCCTAT 415 ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 357 ACTTCAGAATCTCCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTACTTTCATTCCTAT 416 Query 416 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGATCGGGCAAGGACAGAAACTTATAGG 475 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 417 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGACCGGGCAAGGACGGAAACTTATAGG 476 Query 476 GAAGCCATAATGCAGCATCAGAGCTTAA-TCGAAGGCAAGGTCGTGGTGGACGTTGGCTG 534 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 477 GAAGCCATAATGCAGCATCAGAGCTTAATTC-AAGGCAAGGTCGTGGTGGACGTTGGCTG 535 Query 535 TGGAACTGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGTGCAAAACGGGTATATGCTGT 594 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 536 TGGAACAGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGAGCAAAACGGGTATATGCTGT 595 Query 595 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACGGTTTATCCGA 654 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 596 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACAGTTTATCCGA 655 Query 655 TAAGGTCATTGTCTTGCACGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 714 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CAAGGTCATTGTCTTGCATGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 715 Query 715 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 775 Query 775 CACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 834 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 835 Query 835 ATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAA 894 ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 836 ATACATGGCACCTGTTTCACACCCTGACAGATACAGTCACAGCATTGATTTTTGGCGCAA 895 Query 895 TGTTTATGGAATTGATATGTCTGCGATGATGCAATTAGCTAAACAGTGTGCTTTTGAAGA 954 |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 896 TGTTTATGGAATCGATATGTCTGCCATGATGCAATTAGCTAAACAGTGTGCGTTTGAAGA 955 Query 955 ACCCAGCGTGGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1014 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 ACCCAGCGTAGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1015 Query 1015 TATAGACTGTAAAACTATAAAAATCCAAGAGCTAGACTCGGTTACTGCAAGATATAAATT 1074 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1016 TATAGACTGTCAAACTATAAAAATCCAAGAGCTAGACTCTGTTACTGCAAGATATAAATT 1075 Query 1075 CAACTCAATGATGAGAGCTCCAATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1134 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1076 CAACTCAATGATGAGAGCTCCTATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1135 Query 1135 CGGACCGGCCTCTTCACCTGCCAAGAATACTAGTGAAACCAGTATTGCTAGTGGTTCTTC 1194 ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1136 CGGACCGACCTCTTCGCCTGCCAAGAATACTAGTGAAACTAGTGTTGCTAGTGGTTCTTC 1195 Query 1195 GTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1254 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1255 Query 1255 TGTGTTGTCCACCTCTCCCGAGTCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1314 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1256 CGTGTTGTCCACCTCTCCCGAGGCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1315 Query 1315 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1375 Query 1375 AAGCAAAGAGAACAAGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1434 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 AAGCAAAGAGAACCGGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1435 Query 1435 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCTCTGACAATTCA-TCCTTACC 1493 ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| Sbjct 1436 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCACTGACAAATCCGTCCTTACC 1495 Query 1494 TTTAGAAGCCCTGTAAGGTGT-AGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1552 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1496 TTTAGAAGCCCTGTAAGGTGTTAGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1555 Query 1553 CAGAACCAACAATTGAGGACATTGACAAACTCAAGCTATTTTTAGTCTGCGAAAACACCA 1612 | ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1556 CGGAACCAATAATTGAAGACATTGACAAACACAAGCTATTTTTAGTCTGCGAAAACACCA 1615 Query 1613 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1675 Query 1673 GAGGCTATT-TATAAGCTTGTTACTAGCCATCCACTCAGCAGACACTTCTCTTTGAGTGC 1731 ||||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1676 GAGGCTATTCT-TA-GCTTGTTACTAGCCAACCACTCAGCAGACACTTCTCTTTGAGTGC 1733 Query 1732 TTATATATGTCATGCATATTTTATTGGTGATTTGTATAA---AATTCATCATGATCAATT 1788 |||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| Sbjct 1734 TTATATATGTCATGCATATTTTATTGGTAATTTGTATAACCTAATTCATCAAGATCAATT 1793 Query 1789 TATTCAATTTAGCGTT 1804 |||||||||||| ||| Sbjct 1794 TATTCAATTTAGTGTT 1809 > Ahg342120 jgi|Araly1|342120|fgenesh1_pg.C_scaffold_3001883 Length=339 Score = 322 bits (174), Expect = 6e-87 Identities = 190/198 (96%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1103 GGTTTTGCATTTTGGTTCGACGTTGAATTCAGCGGACCGGCCTCTTCACCTGCCAAGAAT 1162 |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | | Sbjct 109 GGTTTTGCATTTCGGTTCGACGTTGAATTCAGCGGACCAGCCTCTTCGCCTGCCAACACT 168 Query 1163 ACTAGTGAAACCAGTATTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 1222 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 ACTAGTGAAACTAGTGTTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 228 Query 1223 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGTCTCCT 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 229 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGGCTCCT 288 Query 1283 CCAACGCATTGGCAGCAA 1300 |||||||||||||||||| Sbjct 289 CCAACGCATTGGCAGCAA 306 Score = 80.5 bits (43), Expect = 4e-14 Identities = 54/59 (92%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 464 GAAAC-TTATAGGGAAGCCATAATGCAGCATCAGAGCTTAATCGAAGGCAAGGTCGTGG 521 ||||| || | |||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 4 GAAACTTTTTGGGGAAGCCATAATGCAGCATCAGAGCTTAATCCAAGGCAAGGTTGTGG 62 > Ahg925524 jgi|Araly1|925524|scaffold_201085.1 Length=269 Score = 150 bits (81), Expect = 3e-35 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 206 GAGCTTGAATTGGAAGACAAGCAAGGCCCCAGTCTCAGCTCTTTTGGCCGAGCCAAGAAG 265 ||||||||| | || ||||| ||| |||| ||||||||||||||||| |||||||| | Sbjct 46 GAGCTTGAACTAAAATACAAGAAAGTCCCCGGTCTCAGCTCTTTTGGCAGAGCCAAGGGG 105 Query 266 CGCAGTCACGCCGGAGCTCGTGACCCTCGAGGCGGTCTCGCCAATGTGCTTAGGGTT 322 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 106 CGCAGTCACGCCGGAGCTCATGACCCTAGAGGCGGTCTCGCCAATGTGCTTAGGGTT 162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68029177570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5