BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20020.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479521 jgi|Araly1|479521|fgenesh2_kg.3__2222__AT3G20020.1 2876 0.0
Ahg342120 jgi|Araly1|342120|fgenesh1_pg.C_scaffold_3001883 322 6e-87
Ahg925524 jgi|Araly1|925524|scaffold_201085.1 150 3e-35
> Ahg479521 jgi|Araly1|479521|fgenesh2_kg.3__2222__AT3G20020.1
Length=1809
Score = 2876 bits (1557), Expect = 0.0
Identities = 1733/1816 (95%), Gaps = 20/1816 (1%)
Strand=Plus/Plus
Query 2 AAATTACATAATTACCAAAGaaaaaaaTGA-tttttttttAGGGGTTTTAATTA-GTTAG 59
||||||||||||||||||||||||||| | ||||||||||| ||| ||| | |
Sbjct 1 AAATTACATAATTACCAAAGAAAAAAAAAACAAATTTTTTAGGGG-ATTAGTTAGGAAAA 59
Query 60 AAAAAAGGAGGCTCCTTTGGAAGAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 119
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAAAAAGAGGCTCCTTT-G--GAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 116
Query 120 CAGAGAAAG----TCTCTCTCTGTGTCTAACTGaaaaaaaTGCAATCTGGCGGCGATTTC 175
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 117 CAGAGAAAGTCTCTCTCTCTCTGTGTTTAACTGAAAAAAATGCAATCTGGCGGCGATTTC 176
Query 176 AGCAACGGTTTCCACGGAGACCATCACCGCGAGCTTGAATTGGAAGACAAGCAAGGCCCC 235
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 177 AGCAACGGTTTCCACGGCGACCAACACCGCGAGCTTGAATTGGAAGACAAGCAAGTCCCC 236
Query 236 AGTCTCAGCTCTTTTGGCCGAGCCAAGAAGCGCAGTCACGCCGGAGCTCGTGACCCTCGA 295
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 237 GGTCTCAGCTCTTTTGGCCGAGCCAAGAGGCGCAGTCACTCCGGAGCTCGTGACCCTAGA 296
Query 296 GGCGGTCTCGCCAATGTGCTTAGGGTTTCTGACCAGCTTGGCGAGCACAAGTCATTGGAG 355
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 297 GGCGGTCTCGCCAATGTGCTTAGGGTTTCCGACCAGCTTGGCGAGCAGAAGTCACTGGAG 356
Query 356 ACTTCGGAATCTTCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTATTTTCATTCCTAT 415
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 ACTTCAGAATCTCCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTACTTTCATTCCTAT 416
Query 416 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGATCGGGCAAGGACAGAAACTTATAGG 475
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 417 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGACCGGGCAAGGACGGAAACTTATAGG 476
Query 476 GAAGCCATAATGCAGCATCAGAGCTTAA-TCGAAGGCAAGGTCGTGGTGGACGTTGGCTG 534
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 477 GAAGCCATAATGCAGCATCAGAGCTTAATTC-AAGGCAAGGTCGTGGTGGACGTTGGCTG 535
Query 535 TGGAACTGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGTGCAAAACGGGTATATGCTGT 594
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 TGGAACAGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGAGCAAAACGGGTATATGCTGT 595
Query 595 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACGGTTTATCCGA 654
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACAGTTTATCCGA 655
Query 655 TAAGGTCATTGTCTTGCACGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 714
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAAGGTCATTGTCTTGCATGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 715
Query 715 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 775
Query 775 CACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 835
Query 835 ATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAA 894
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 836 ATACATGGCACCTGTTTCACACCCTGACAGATACAGTCACAGCATTGATTTTTGGCGCAA 895
Query 895 TGTTTATGGAATTGATATGTCTGCGATGATGCAATTAGCTAAACAGTGTGCTTTTGAAGA 954
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 896 TGTTTATGGAATCGATATGTCTGCCATGATGCAATTAGCTAAACAGTGTGCGTTTGAAGA 955
Query 955 ACCCAGCGTGGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1014
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACCCAGCGTAGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1015
Query 1015 TATAGACTGTAAAACTATAAAAATCCAAGAGCTAGACTCGGTTACTGCAAGATATAAATT 1074
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1016 TATAGACTGTCAAACTATAAAAATCCAAGAGCTAGACTCTGTTACTGCAAGATATAAATT 1075
Query 1075 CAACTCAATGATGAGAGCTCCAATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1134
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CAACTCAATGATGAGAGCTCCTATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1135
Query 1135 CGGACCGGCCTCTTCACCTGCCAAGAATACTAGTGAAACCAGTATTGCTAGTGGTTCTTC 1194
||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1136 CGGACCGACCTCTTCGCCTGCCAAGAATACTAGTGAAACTAGTGTTGCTAGTGGTTCTTC 1195
Query 1195 GTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1255
Query 1255 TGTGTTGTCCACCTCTCCCGAGTCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1314
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGTGTTGTCCACCTCTCCCGAGGCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1315
Query 1315 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1375
Query 1375 AAGCAAAGAGAACAAGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1434
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAGCAAAGAGAACCGGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1435
Query 1435 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCTCTGACAATTCA-TCCTTACC 1493
||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 1436 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCACTGACAAATCCGTCCTTACC 1495
Query 1494 TTTAGAAGCCCTGTAAGGTGT-AGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTTAGAAGCCCTGTAAGGTGTTAGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1555
Query 1553 CAGAACCAACAATTGAGGACATTGACAAACTCAAGCTATTTTTAGTCTGCGAAAACACCA 1612
| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1556 CGGAACCAATAATTGAAGACATTGACAAACACAAGCTATTTTTAGTCTGCGAAAACACCA 1615
Query 1613 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1675
Query 1673 GAGGCTATT-TATAAGCTTGTTACTAGCCATCCACTCAGCAGACACTTCTCTTTGAGTGC 1731
||||||||| | || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1676 GAGGCTATTCT-TA-GCTTGTTACTAGCCAACCACTCAGCAGACACTTCTCTTTGAGTGC 1733
Query 1732 TTATATATGTCATGCATATTTTATTGGTGATTTGTATAA---AATTCATCATGATCAATT 1788
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 1734 TTATATATGTCATGCATATTTTATTGGTAATTTGTATAACCTAATTCATCAAGATCAATT 1793
Query 1789 TATTCAATTTAGCGTT 1804
|||||||||||| |||
Sbjct 1794 TATTCAATTTAGTGTT 1809
> Ahg342120 jgi|Araly1|342120|fgenesh1_pg.C_scaffold_3001883
Length=339
Score = 322 bits (174), Expect = 6e-87
Identities = 190/198 (96%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1103 GGTTTTGCATTTTGGTTCGACGTTGAATTCAGCGGACCGGCCTCTTCACCTGCCAAGAAT 1162
|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct 109 GGTTTTGCATTTCGGTTCGACGTTGAATTCAGCGGACCAGCCTCTTCGCCTGCCAACACT 168
Query 1163 ACTAGTGAAACCAGTATTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 1222
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 ACTAGTGAAACTAGTGTTGCTAGTGGTTCTTCGTCGATAAGTCCTTCTGGAGAAGTAAAT 228
Query 1223 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGTCTCCT 1282
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 CAGAAGAAGCGGACTAATCCGAGTGATGCACTTGTGTTGTCCACCTCTCCCGAGGCTCCT 288
Query 1283 CCAACGCATTGGCAGCAA 1300
||||||||||||||||||
Sbjct 289 CCAACGCATTGGCAGCAA 306
Score = 80.5 bits (43), Expect = 4e-14
Identities = 54/59 (92%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 464 GAAAC-TTATAGGGAAGCCATAATGCAGCATCAGAGCTTAATCGAAGGCAAGGTCGTGG 521
||||| || | |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 4 GAAACTTTTTGGGGAAGCCATAATGCAGCATCAGAGCTTAATCCAAGGCAAGGTTGTGG 62
> Ahg925524 jgi|Araly1|925524|scaffold_201085.1
Length=269
Score = 150 bits (81), Expect = 3e-35
Identities = 105/117 (90%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 206 GAGCTTGAATTGGAAGACAAGCAAGGCCCCAGTCTCAGCTCTTTTGGCCGAGCCAAGAAG 265
||||||||| | || ||||| ||| |||| ||||||||||||||||| |||||||| |
Sbjct 46 GAGCTTGAACTAAAATACAAGAAAGTCCCCGGTCTCAGCTCTTTTGGCAGAGCCAAGGGG 105
Query 266 CGCAGTCACGCCGGAGCTCGTGACCCTCGAGGCGGTCTCGCCAATGTGCTTAGGGTT 322
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 106 CGCAGTCACGCCGGAGCTCATGACCCTAGAGGCGGTCTCGCCAATGTGCTTAGGGTT 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5