BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20030.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929891 jgi|Araly1|929891|scaffold_302348.1 649 0.0
Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772 525 3e-148
Ahg929886 jgi|Araly1|929886|scaffold_302343.1 492 3e-138
Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001 455 4e-127
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 178 9e-44
Ahg925254 jgi|Araly1|925254|scaffold_200815.1 100 2e-20
> Ahg929891 jgi|Araly1|929891|scaffold_302348.1
Length=1220
Score = 649 bits (351), Expect = 0.0
Identities = 877/1120 (78%), Gaps = 79/1120 (7%)
Strand=Plus/Plus
Query 1 ATGACGATGATGAGTGATCTTTCGCAGGATTTGTTAGAGG-AGATATTGTCTAGGGTTCC 59
|||||||||||| |||||||| || | |||| ||| || ||||| | |||||||||||
Sbjct 22 ATGACGATGATGTCCGATCTTTCACAAGTTTTGGTAG-GGAAGATACTCTCTAGGGTTCC 80
Query 60 GAGAACTTCTCT-AGGAGCAGT-ACGATCCACTTGCAAACGGTGGAACACTTTATTCAAA 117
|| ||||||||| | ||||||| | |||||||||||||||| |||||| |||||| ||||
Sbjct 81 GATAACTTCTCTCA-GAGCAGTGA-GATCCACTTGCAAACGATGGAACGCTTTATCCAAA 138
Query 118 GAT-CGAATTCTATGTAAAGCAGAAGAAACAAGGGATCAGTTTC---GGTTCATAATGAA 173
||| || || | ||||||||||||| | | | | | ||||| ||||||| ||||
Sbjct 139 GATGCG-GTTTTGTGTAAAGCAGAAG---CCATGCAGCCGTTTCTAGGGTTCATGATGAT 194
Query 174 GAAGTATAAGCTTTGTTCAATGAGGTTTGATCT-CAACGGAA-CCTTAAACGAAGATGGA 231
| | ||||||||||||||||| || || || | ||| |||| || | |||||||| ||
Sbjct 195 GGATTATAAGCTTTGTTCAATAAGATTCAATATCCAA-GGAATCC-TCAACGAAGACGG- 251
Query 232 GGTACCGAATTCGTGGATCCATCTATAAAGGAGTTAGGTCAtttttttAATCAAGTCAAG 291
| | || || |||||| |||| ||||||||| ||||| |||| |||||||||| |
Sbjct 252 TG-A-AGACTTTGTGGATGCATCAATAAAGGAGATAGGTAATTTAATTAATCAAGTTGAT 309
Query 292 ATATCTAAAGTTTTTCAATGCGACGGGTTATTGTTGTGCGTGACCAAAGAGGACAACATT 351
||||||||||||||||| ||||| ||||||||||| ||||| | | ||| |||||||| |
Sbjct 310 ATATCTAAAGTTTTTCATTGCGATGGGTTATTGTTATGCGTCA-C-AAG-GGACAACACT 366
Query 352 AGGCTCGTGGTATGGAATCCTTATTTGGGTCAAATCAGGTGGATCGAATCCGGTAACACT 411
|| |||||||| ||||| || ||| || |||||| |||||||||| || || | || |
Sbjct 367 AGCCTCGTGGTCTGGAACCCGTATATGTGTCAAACCAGGTGGATCCAACCCCG-AA-GC- 423
Query 412 AATTACCG-CCTATTCGACAGGTATGCTATCGGATACGACAATAACCGTAAACACAAAAT 470
||| || | ||| ||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 424 GCTTA-CGACAGATTTGACAGCTATGCTATCGGATACGACAACAACCGTAACCAGAAAAT 482
Query 471 CTTGAGGTTTCTGGAAT-ATTACA-ACTTTA-ACATGAAGCACAGATTTCTTGAGTACGA 527
||||||||| ||| || | | || || || || ||| | ||| ||| ||||||
Sbjct 483 ATTGAGGTTTGTGG-ATCA-T-CATGGAATAGACGGGACCCAC-G-TTT-TTGGGTACGA 536
Query 528 AATCTACGA-TTTTAGCTCTAATTCATGGAGGGTTCTTGATATCGCTCCCCGTTGGGAAA 586
|||||| || || || ||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 537 AATCTATGAGTTAAAG-TCTAATTCATGGAGGGTTCTTGATATCACTCCCGGTTGGGATA 595
Query 587 TAGAGTCTTATCAACGTGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAA 646
|||||| |||||||||||| | ||||||||| ||||||||||||||| |||| || || |
Sbjct 596 TAGAGTTTTATCAACGTGGCGTGTCTTTGAAGGGAAACACTTACTTTTTTGCTAAAGAGA 655
Query 647 AAATAGAATACGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTG 706
|||||| | || ||| |||||||| | ||||||||| ||||| ||||||| |||||||
Sbjct 656 AAATAGTGTTCGGAGAATATGGAGAGATGCCAGAGCCGCCAGATTATTTACTTTGTTTTG 715
Query 707 ATTTTACGACGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCACTATCTTTACG 766
||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| || | |
Sbjct 716 ATTTTACGACGGAGAGCTTTGGACAGTATCTTCCTCTACCGTTTGAGCATTATATTGAAG 775
Query 767 ATGTTGG-AGCTCTCTCTTCTCTTGGAG-ATGAGAAACTTGCGGCGTTATTTCAGTGCGG 824
|| ||| | |||| |||| | || || | |||||||| |||||||||| |||| |
Sbjct 776 ATACTGGGA-CTCTATCTTATGTTAAAGGA-GAGAAACTCGCGGCGTTATATCAGAACAT 833
Query 825 G-GATACCGATTTATCAGAGGTGGAGATTTGGGTTACAACTTTGACTGAGACC-AATACA 882
| | ||| || || ||| ||||||| |||||||||| | ||| |||| || |||
Sbjct 834 GAG-TAC--AT--AT--GAGTTGGAGATATGGGTTACAAGTATGATTGAG-CCTAATGTG 885
Query 883 GTGTCATGGA-ATCCTT-TCTTAAAAGTTGATATGGAACCACACTAC-GGTCGTAG-TTT 938
||||| |||| | ||| | ||||| ||||||||| |||||||| || ||| | | |||
Sbjct 886 GTGTCGTGGAGAAACTTGT-TTAAA-GTTGATATGAAACCACAC-ACTGGTT-TGGGTTT 941
Query 939 T-ATGTTTGACTATT-ACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTCGCTGTT 996
| | |||||| || | ||| || |||||||| ||||| ||||||||| |||| ||
Sbjct 942 TCA-GTTTGAGG-TTGAATCTGGAAGCTTCTTCATCGACGAAGAGAAGAAAGTCGCAGTC 999
Query 997 GTTTTTCAGTTT-GACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACATCATTGG 1055
|||||| | | | || |||||| || | ||||| | ||| |||||||||||||
Sbjct 1000 GTTTTTGA-TCTAGATGAATCTC-AA--A---GCTACAAA-ACGG--CTTACATCATTGG 1049
Query 1056 AGAGAATGGCTACGTTAAAAA-AGTGCGTCTTGGAGAAGC 1094
||||||||| ||| || |||| |||| |||||| |||||
Sbjct 1050 AGAGAATGGATAC-TTGAAAAGAGTGAATCTTGGTGAAGC 1088
> Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772
Length=1146
Score = 525 bits (284), Expect = 3e-148
Identities = 337/362 (93%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 429 CAGGTATGCTATCGGATACGACAATAACCGTAAA-CACAAAATCTTGAGGTTTCTGGAAT 487
||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 393 CAGCTATGCTATCGGATACGACAATAACCG-AAATCACAAAATCTTGAGGTTTGTGGATT 451
Query 488 ATTACAACTTTAACA-TGAAGCACAGATTTCTTGAGTACGAAATCTACGATTTTAGCTCT 546
|||| ||| ||| | | ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 452 TTTACGACTCTAA-AGTTAAGCACAAATTTCTCGAGTACGAAATATACGATTTTAGCTCT 510
Query 547 AATTCATGGAGGGTTCTTGATATCGCTCCCCGTTGGGAAATAGAGTCTTATCAACGTGGA 606
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 511 AATTCATGGAGGGTTCTTGATATCACTCCCGGTTGGGAAATAGAGTCTTATCAACGTGGT 570
Query 607 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATAGA-ATACGAAGAGGA 665
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 571 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATA-ATATTCGAAGAGGA 629
Query 666 TGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 725
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 TGGAGAGTATCCAGAGCCGCCAGATTATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 689
Query 726 TGGACAGTTTCTTCCTCTGCCGTTTCAGCACTATCTTTACGATGTTGGAGCTCTCTCTTC 785
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 690 TGGACAGTTTCTTCCTCTGCCGTTTGAGCACTATCTTTACGATGCTGGAGCTCTCTCTTC 749
Query 786 TC 787
||
Sbjct 750 TC 751
Score = 340 bits (184), Expect = 1e-92
Identities = 299/351 (85%), Gaps = 21/351 (6%)
Strand=Plus/Plus
Query 875 CCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGTCGTA 934
||||| ||||||| ||||||||||| ||||||||||||||| ||||||| | || |
Sbjct 755 CCAATGCAGTGTCGTGGAATCCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTTG 814
Query 935 GTTTT-ATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTCGCT 993
||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 815 GTTTTCAT-TTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873
Query 994 GTTGTTTTTCAGTTTGACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACATCATT 1053
|||||| |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 874 GTTGTTATTCATTTTGACGCATCTGAAATGACCCGCTACGAGGACGCAGCTTACATCATT 933
Query 1054 GGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCTCCTGCGAATCAAGGAGGA 1113
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 934 GGAAAGAATGGGTACGTTAAAAAAGTGCGTCTAGGAGAAGCTCCTGCGAATCAAGGAGGA 993
Query 1114 T-----A--TT---GT-TT----CCCATCT-GTGTGTTTTAGCTCTTATGTTCCAAGTTT 1157
| | || || || |||| || ||||||| |||||||||||||||||||||
Sbjct 994 TCTCTCAACTTCAAGTATTGTTGCCCA-CTTGTGTGTTGTAGCTCTTATGTTCCAAGTTT 1052
Query 1158 AGTACAGATCAACCAAATTGTAGGATTCAAAAAAGAAAGAGA-A-GAAGAG 1206
|| ||| |||||||||||| ||||||| |||| |||||||| | ||||||
Sbjct 1053 AGCACAAATCAACCAAATTACAGGATTCGAAAAGGAAAGAGAGATGAAGAG 1103
> Ahg929886 jgi|Araly1|929886|scaffold_302343.1
Length=742
Score = 492 bits (266), Expect = 3e-138
Identities = 403/466 (86%), Gaps = 21/466 (5%)
Strand=Plus/Plus
Query 639 CAAGGAAAAAATAGAATACGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGA-TAATTTAC 697
||| |||||||||| ||||||||| |||| ||||| ||||| |||| || | | ||||||
Sbjct 84 CAACGAAAAAATAGTATACGAAGATGATGTAGAGTATCCAGTGCCGCCAAACT-ATTTAC 142
Query 698 TCTGTTTTGATTTTACGACGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCAC- 756
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TCTGTTTTGATTTTACGGCGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCACC 202
Query 757 -T-ATC-TTTACGATGTTGGAGCTCTCTCTTCTCTTGGAGATGAGAAACTTGCGGCGTTA 813
| || ||| ||||| |||||||||| |||||||||| || |||||||| || ||||||
Sbjct 203 ATGATGATTT-CGATGCTGGAGCTCTCGCTTCTCTTGGGGACGAGAAACTCGCCGCGTTA 261
Query 814 TTTCAGTGCGGGGATACCGATTTATCAGAGGTGGAGA-TTTGGGTTACAACTTTGACTGA 872
| |||| ||| ||||| || | |||||||||| | |||||||||| | | ||| |||
Sbjct 262 TATCAGAGCGAGGATA--GA---A-CAGAGGTGGA-ACTTTGGGTTACTAGTATGATTGA 314
Query 873 GACCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGT-C 931
| ||||| ||||||| ||| | ||||||||||||||||| |||||||||||||||||| |
Sbjct 315 GCCCAATGCAGTGTCGTGGTACCCTTTCTTAAAAGTTGACATGGAACCACACTACGGTTC 374
Query 932 GT-AGTTTTATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTC 990
| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 375 -TCA-TTTTATGTTTCACTTTTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTC 432
Query 991 GCTGTTGTTTTTCAGTTTGACGAATCTGGAAT-GACCCGCTACGAGGACGCAACTTACAT 1049
|| || ||| |||| ||||||||||||| || ||||||| ||||||||||| |||||||
Sbjct 433 GCCGTGGTTATTCACTTTGACGAATCTG-AAGCGACCCGCCACGAGGACGCAGCTTACAT 491
Query 1050 CATTGGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCT 1095
|||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 492 CATTGGTGATAATGGCTACGTTAAAAAAGTGCATCTTGGAGAAGCT 537
> Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001
Length=1068
Score = 455 bits (246), Expect = 4e-127
Identities = 298/322 (93%), Gaps = 8/322 (2%)
Strand=Plus/Plus
Query 429 CAGGTATGCTATCGGATACGACAATAACCGTAAA-CACAAAATCTTGAGGTTTCTGGAAT 487
||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 390 CAGCTATGCTATCGGATACGACAATAACCG-AAATCACAAAATCTTGAGGTTTGTGGATT 448
Query 488 ATTACAACTTTAACA-TGAAGCACAGATTTCTTGAGTACGAAATCTACGATTTTAGCTCT 546
|||| ||| ||| | | ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 449 TTTACGACTCTAA-AGTTAAGCACAAATTTCTCGAGTACGAAATATACGATTTTAGCTCT 507
Query 547 AATTCATGGAGGGTTCTTGATATCGCTCCCCG-TTGGGAAATAGAGTCTTATCAACGTGG 605
|||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 508 AATTCATGGAGGGTTCTTGATATCACT-CCCGATTGGGAAATAGAGTCTTATCAACGTGG 566
Query 606 AGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATAGA-ATACGAAGAGG 664
||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 567 TGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATA-ATATTCGAAGAGG 625
Query 665 ATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGACGGAGAGCT 724
||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 626 ATGGAGAGTATCCAGAGCCGCCAGATTATTTACTCTGTTTTGATTTTACGACGGAGAGCT 685
Query 725 TTGGACAGTTTCTTCCTCTGCC 746
||||||||||||||||||||||
Sbjct 686 TTGGACAGTTTCTTCCTCTGCC 707
Score = 302 bits (163), Expect = 5e-81
Identities = 218/245 (89%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 871 GAGACCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGT 930
||| ||||| ||||||| ||||||||||| ||||||||||||||| ||||||| | ||
Sbjct 751 GAGCCCAATGCAGTGTCGTGGAATCCTTTTTTAAAAGTTGATATGAAACCACATTGTAGT 810
Query 931 CGTAGTTTT-ATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACT 989
| ||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 811 TTTGGTTTTCAT-TTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGT 869
Query 990 CGCTGTTGTTTTTCAGTTTGACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACAT 1049
|| ||||||| |||| ||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 870 CGGTGTTGTTATTCATTTTGACGCATCTGAAATGACCCGCTACGAGGACGCAGCTTACAT 929
Query 1050 CATTGGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCTCCTGCGAATCAAGG 1109
||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 930 CATTGGAAAGAATGGGTACGTTAAAAAAGTGCGTCTAGGAGAAGCTCCTGCGAATCAAGG 989
Query 1110 AGGAT 1114
|||||
Sbjct 990 AGGAT 994
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 178 bits (96), Expect = 9e-44
Identities = 554/758 (73%), Gaps = 99/758 (13%)
Strand=Plus/Plus
Query 28 GATTTGTTAGAGGAGATATTGTCTAGGGTTCCGA--GAACTTCTCTAG-GAGCAGTACGA 84
|||||| ||||||||||| | ||||| ||||| | | || ||| | | ||||| ||||
Sbjct 48 GATTTGGTAGAGGAGATACTCTCTAGAGTTCC-ACTG-ACATCT-TTGAGAGCAACACGA 104
Query 85 TCCACTTGCAAACGGTGGAACACTTTATTC-AAAGATC-GAATTCT-AT-GTAAAGCAGA 140
|| ||||||||| ||||||| ||||| || ||| ||| || || | | | |||||| |
Sbjct 105 TCTACTTGCAAAAAGTGGAACGCTTTA-TCGAAAAATCAGATTTTTGGTAGAAAAGCA-A 162
Query 141 -AGAAACAAGGGATCAG-TT-T-CGGTTCATAATGAAGAAGTAT-AA-GCTTTGTTCAA- 193
|| | ||||| | ||| || | |||| || |||||| | | | || |||||||||||
Sbjct 163 CAGCAGCAAGGAAGCAGTTTATGGGGTTTATGATGAAGGA-T-TCAAGGCTTTGTTCAAT 220
Query 194 TGAGGTTTGATCT-CAACGGAACCTTAAACGAAGATGGAGGTACCG-AA-TTCGTGGATC 250
||| || ||||| ||| |||| | |||| || || | || | || ||||| ||||
Sbjct 221 TGA-ATTCGATCTCCAA-GGAA---T--CCGAA-AT-GAAG-ACGGCAACTTCGTTGATC 270
Query 251 CATCTATAAAG-GAGTTAGGTCAtttttttAATCAAGTCAAGATATCTAAAGTTTTTCAA 309
||||||||||| || || || | | |||| |||||| || ||||||| || |||||
Sbjct 271 CATCTATAAAGCAAG-TAAGT-A--TACTTAACCAAGTCGAGGTATCTAATGTCTTTCAC 326
Query 310 TGCGACGGGTTATTGTTGTGCGTGACCAAAGAGGACAACATT--AGGCTCGTGGTATGGA 367
|||||||| |||||| | ||||| || |||||| | ||| |||||| |||||||||
Sbjct 327 TGCGACGGTTTATTGCTATGCGT--CC-TTGAGGAC-A-ATTCGAGGCTCTTGGTATGGA 381
Query 368 ATCCTTATTTGGGTCAAATCAGGTGGATCGAATCCGGTAACACTAATTACCGCCTATTCG 427
|||| |||||||| |||| |||||||||| || || | |||||| || | | | |
Sbjct 382 ATCCGTATTTGGGGCAAACCAGGTGGATCCAACCCAGAAACACT--TT-----C-A-T-G 431
Query 428 ACAGGTATGCTATC-GGATACGACAATAACCGTAAACACAAAATCTTGAGGTTTCTGGAA 486
||| ||| | | || || ||||| |||||||| ||||||||||||| || |
Sbjct 432 --AGGCATG--A-CAGG-TATGACAAGAACCGTAACCACAAAATCTTGA-------GG-A 477
Query 487 TATTACAACT-TTAACATGAAGCACAGATTTCTTGAG-TACGAAATCTACGATTTTAGCT 544
| || | | | | | | | | | | | |||| || | | ||||||||||||||||||||
Sbjct 478 T-TTTCTA-TGTGATC--G-ACCGC-G-TTTC-TG-GTTTCGAAATCTACGATTTTAGCT 528
Query 545 CTAATTCATGGAGGGTTCTTGATATCGCTCCCCGT-TGGGAAATAGA-GTCTTATCAACG 602
|||||||||||| ||||||| || || |||| | ||||||||| | | || || ||
Sbjct 529 CTAATTCATGGAAGGTTCTTCATGTCACTCCT-GACTGGGAAATA-ATGCCTCCTCGGCG 586
Query 603 TGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGC-CAAG-GAAAA-AATAGAA--T-- 655
||| | ||||||||| ||||| ||||||||| ||| ||| || || ||||| |
Sbjct 587 TGGTGTGTCTTTGAAGGGAAATACTTACTTTCCTGCTCAAAAGAGAACAATAGTGGGTGT 646
Query 656 ACGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGA 715
| ||| | || ||| | | |||| | |||| |||| |||| ||||||||||| |
Sbjct 647 AGGAACAAGAAGGATAATAA--AGAGT-GA-AGATTTTTTAGTCTGCTTTGATTTTACAA 702
Query 716 CG-GAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCA 752
| ||||| ||||||| | |||| ||||||||||||||
Sbjct 703 -GAGAGAGATTTGGACCGCTTCTCCCTCTGCCGTTTCA 739
> Ahg925254 jgi|Araly1|925254|scaffold_200815.1
Length=1202
Score = 100 bits (54), Expect = 2e-20
Identities = 175/229 (76%), Gaps = 26/229 (11%)
Strand=Plus/Plus
Query 432 GTATGCTATCGGATACGAC---AATAACCGTAAACACAAAATCTTGAGG--TTTCTGGAA 486
||||||| ||||||| ||| || || |||| ||||||||||||||| |||| | |
Sbjct 374 GTATGCTCTCGGATATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTC--G-A 430
Query 487 TATTACAACTTTAA-CATGAAGCACAG-AT-TTCTTG-AGTACGAAATCTACGATTTTAG 542
| || | || ||| | |||| | || || || | | | ||||||||||||||||||||
Sbjct 431 T-TTTC--CTCTAAGC-GGAAG-AGAGTATGTTATAGTA-TACGAAATCTACGATTTTAG 484
Query 543 CTCTAATTCATGGAGGGTTCTTGATATCGCTCCC--CGT-TGGGAAATAGAGTCT--TAT 597
|||||||||||||| |||||||||| || || | || || | ||| ||| |||
Sbjct 485 CTCTAATTCATGGAAGGTTCTTGATGTCCCTACGGACGACTGCCATATATCTTCTCATAT 544
Query 598 CAACGTGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAA 646
||||| | ||||||||||| ||||||||||| ||| |||| |||||||
Sbjct 545 CAACG-GC-GCGTCTTTGAAGGGAAACACTTATTTTCTTGC-AAGGAAA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5