BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20040.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1 3048 0.0
Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1 1210 0.0
> Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1
Length=1970
Score = 3048 bits (1650), Expect = 0.0
Identities = 1824/1908 (96%), Gaps = 11/1908 (1%)
Strand=Plus/Plus
Query 32 ATCAATCTCTCCCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTTACCGGGATTTGT 91
||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATCAATCTCTCTCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTCGCCGGAATTTGT 60
Query 92 TGTCTACAAGGGAACC-TCGAGCGCAAGGCTGTTTAATCGGAAGAATCTGGAGTCACGGA 150
|||||||| || ||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 CGTCTACAACGG-ACCTTCGAGCGCAAGGCTATTTAATCGGAAGAATTTGGAGTCACGGA 119
Query 151 GAAGCAAAAATGAACAAAAAGAGAGACCCTTTATGCTGAGACGGTTTAATTTTGTATCTG 210
| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GGAGCAAAAA--AACAAAAAGAGAGACCCTTTATGCTGAGACGGTTTAA-TTTGTATCTG 176
Query 211 TGGTTATAGAAAGGAATCGTTTGCGATGAAATGGAGCCTTATAGGGTTATTCTGATCGGT 270
|||||||||||||||| | |||| |||||||||||| || || |||||||||||||||
Sbjct 177 TGGTTATAGAAAGGAA---TATGCGTTGAAATGGAGCCGTAGAGAGTTATTCTGATCGGT 233
Query 271 GGTTGAAGCGTTGTCATTTGCATTTCGTGTCATTCTGGTTATAGACTCTGTTTCAATTGC 330
||||||||| ||||||| |||||||||||||| |||| ||||||||||| ||| ||||||
Sbjct 234 GGTTGAAGCTTTGTCATCTGCATTTCGTGTCAATCTGATTATAGACTCT-TTTAAATTGC 292
Query 331 TTCTCGTCGTAAAGGCGTTTGCTTTTGTGAGTAATTTATCTCGATTCTTCTGAAAGACGT 390
||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 293 TTCTCGTCGTAAAGGCGCTTGCTTTTGTGGGTAACTTATCTCGATTTTTCTGAAAGACGT 352
Query 391 AGAAAGAGAGAAGGTTGTGTATAGATA-TTGGAAATGGGGAAGGTTTTGGTGATGTTGAC 449
||||||||| |||||||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct 353 AGAAAGAGACAAGGTTGTGTGTAGATATTTGG-AATGGGGAGGGTTTTGGTGATGTTGAC 411
Query 450 GGCAGCTGCGGCTGTGGTGGCTTGTTCAGTGGCGACTGTGATGGTGAGAAGGAGGATGAA 509
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 412 GGCAGCTGCGGCTGTGGTGGCTTGTTCAATGGCGACGGTGATGGTGAGAAGGAGGATGAA 471
Query 510 AGGGAGGAGGAAATGGAGGAGGGTGGTGGGTTTACTTAAGGATTTGGAGGAAGCTTGTGA 569
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 472 AGGGAGGAGGAAGTGGAGGAGGGTGGTGGGTATACTTAAGGATTTGGAGGAGGCTTGTGA 531
Query 570 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGG 629
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 532 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCTATAGCTGTGGAGATGCAAGCTGG 591
Query 630 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTTCC 689
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 592 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGCTGCTCACTTTTGTTGATGATCTTCC 651
Query 690 CAATGGGAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGAT 749
||||| |||||||| |||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 652 CAATGAGAGCGAGAGAGGAACTTATTACGCCCTTCATCTTGGAGGCTCTTACTTTAGGAT 711
Query 750 AATAAAGGTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACA 809
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 712 AATAAAGGTTCATCTGGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGGCA 771
Query 810 TTCCATACCAACATCTTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATC 869
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 772 TTCCATACCGACATCTTTGATGAACAGCACCAGCGAGGTTCTCTTCGACTTTCTCGCATC 831
Query 870 ATCCTTGCAGAGGTTTATTGAAAAAGAAGGGAACGATTTCAGTTTGTCACAACCTTTAAA 929
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||
Sbjct 832 ATCCTTGCAGAGGTTTATTGAAAAGGAAGGGAACGATTTCAATTTGTCGCAACCTGTAAA 891
Query 930 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGT 989
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 892 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAAACATCTATTTCATCAGGAGT 951
Query 990 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1011
Query 1050 ATGTCTACAAGGAGCGTTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1109
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ATGTCTACAAGGAGCATTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1071
Query 1110 TGATACTGTTGGGGCTTTATCCTTTGGACATTTTCATGACCCAGACACAATTGCTGCTGT 1169
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 TGATACTGTTGGGGCATTATCCTTTGGACATTTTCATGACCCAGACACAATTGCCGCTGT 1131
Query 1170 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1191
Query 1230 TCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1289
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCAAAATCCACGCACAACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1251
Query 1290 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1311
Query 1350 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1371
Query 1410 AGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCATTTTATC 1469
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1372 AGTAATTCTTCGAATGTCACAAGAGTCTGACATCTTTGGACCCATCTCATCCATTTTATC 1431
Query 1470 CACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCCGA 1529
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1432 TACGCCTTTTGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCTGA 1491
Query 1530 GTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCAATGAAGGT 1589
|||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1492 GTTACAAGAAGTAGCAAGAATTTTGAAAGATTTAGGGGTGTCAGAGGTACCATTGAAGGT 1551
Query 1590 GAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1649
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GAGGAAACTTGTAGTGAAGATATGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1611
Query 1650 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGGAGGAAGGAG 1709
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1612 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGTGGAGGAGGAAGGAG 1671
Query 1710 AAGCGATAAGCAGATAATGAGAAGAACAGTGGTGGCAGTTGAAGGAGGTCTGTATTTGAA 1769
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1672 AAGCGATAAGCAAATAATGAGAAGAACAGTGGTGGCAGTAGAAGGAGGTCTGTATTTGAA 1731
Query 1770 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1791
Query 1830 GGCTCAACACGTAGTGGTGAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1889
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GGCTCAACATGTAGTCGTTAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1851
Query 1890 GCTGGCTTCGTCACAAAGTGTTCAAACAATACCATCCGTATGAATAAT 1937
| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1852 GTTGGCTTCCTCACAAAGTGTTCAAACCATACCATCCGTATGAATAAT 1899
> Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1
Length=2007
Score = 1210 bits (655), Expect = 0.0
Identities = 1201/1458 (82%), Gaps = 63/1458 (4%)
Strand=Plus/Plus
Query 462 TGTGGTGGCTTGTTCAGTGGCGACTGTGATGG-TGAGAAGGAGGAT-GAAAGGGAGGAGG 519
||||| ||||||||| || ||| | ||||||| || | |||||||| || | | |||||
Sbjct 355 TGTGGCGGCTTGTTCTGTTGCGGCGGTGATGGTTG-GGAGGAGGATGGAGA-GTCGGAGG 412
Query 520 AAATGGAGGAGGGTGG-TG-GGTTTACTTAAGGATTTGGAGGAAGCTTGTGAGACGCCTT 577
|||||||||| |||| || | ||| | || || |||||||| | |||||| || ||
Sbjct 413 AAATGGAGGACTGTGGTTGAGATTT--TGAAAGAATTGGAGGATGATTGTGATACTCCGG 470
Query 578 TAGGAAGGTTGAGGC-AGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGGTTTGGTT 636
| || |||||||||| || |||||||||| || || ||||||||||| ||||| |||| |
Sbjct 471 TGGGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCGGTGGAGATGCACGCTGGATTGGCT 529
Query 637 TCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTT-CCCAATGG 695
||||||||||| || |||||||||||| | |||||||| || |||||| || |||| |||
Sbjct 530 TCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGAT-TTGCCCACTGG 588
Query 696 GAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGATAATAAA 755
||| |||| |||||| |||||||||||||| ||||||||| | || |||||||| | ||
Sbjct 589 GAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGAGGCACTTATTTTAGGAT-TTTAA 647
Query 756 G-GTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACATTCC- 813
| |||| ||| ||||||||||| || | ||| || ||||||||||| |||||||| ||
Sbjct 648 GAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTTCAAGATGTCGAACGACA-CCCA 706
Query 814 ATACCAACATC-TTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATCATC 872
||||| || | ||||||||||||||| ||||||||||| ||| |||||||||| | ||
Sbjct 707 ATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTTCAACTTTCTCGCTTTTTC 765
Query 873 CTTGCAGAGGTTTATTGAAAAAGAAGG-GAACGATTTCAGTTTGTCACAACCT-TTAAAA 930
|||| | |||||||||| ||||| ||| |||| | || | |||||| | || | |
Sbjct 766 CTTGGAAAGGTTTATTG-AAAAGGAGGAAAACGGGTCCA--AT-TCACAAGGTGTT-AGA 820
Query 931 AGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGTT 990
||||||||||| ||||| ||||| ||||| |||||||| || || || || |||||||||
Sbjct 821 AGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTT 880
Query 991 CTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049
||||| ||||||||||||||||||| | ||||||||||||| ||| |||| || |||||
Sbjct 881 CTAATCAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTTGGACAAGATATAGCTGA 939
Query 1050 ATGTCTACAAGGAGCG-TTGAACAAG-AGAGGGCTAGATATTCGCGTTGCAGCTCTTGTG 1107
|||||||||||||||| || ||| || ||||| |||||||| | ||||| | |||||||
Sbjct 940 ATGTCTACAAGGAGCGCTT-AAC-AGAAGAGGCCTAGATATGCACGTTGGGGTTCTTGTG 997
Query 1108 AATGATACTGTTGGG-GCTTTATC-CTTTGGACATTTTCATGACCCAGACACAATTGCTG 1165
|||||||||| |||| || || || | ||||| ||| |||||| ||||||||| ||| ||
Sbjct 998 AATGATACTG-TGGGAGCCTTGTCGC-TTGGATATTATCATGATCCAGACACACTTGTTG 1055
Query 1166 CTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTT-GAACGAACTGATGCCATAATC 1224
| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1056 CGGTTGTGTTTGGAACAGGTAGTAATGCATGTTA-CTTGGAACGAACTGATGCCATAATT 1114
Query 1225 AAGTGTCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAAC 1284
|||||||| || | || |||||||| |||||||||||||||||||||||||||||
Sbjct 1115 AAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAGTGGGGAAAT 1174
Query 1285 TTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATG 1344
|||||||| || | | |||| |||||| | |||||| |||| ||||||||||||||| |
Sbjct 1175 TTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCAGAGAGT-TC 1233
Query 1345 AATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGT 1403
|| | ||||||| ||||| ||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1234 AAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGT 1293
Query 1404 CCGCAGAGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCAT 1463
|| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 1294 TCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATCTCGCCCGT 1353
Query 1464 TTTATCC-ACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACA 1522
||||| | ||||| |||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1354 GTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAAGATGACA 1412
Query 1523 CATCC-GAGTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCA 1581
|| || |||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||
Sbjct 1413 CA-CCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGATGTACCA 1471
Query 1582 ATGAAGGTGAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGG 1641
|||||||||| ||||| || ||||| || ||||| || || ||| | ||||||| |||
Sbjct 1472 GTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCAGGGAGG 1531
Query 1642 CTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGG- 1700
||||||||||||||||| |||||||||||||||||| |||| ||||||| || |||||
Sbjct 1532 CTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGTGGAGGG 1591
Query 1701 AGGA--AG-G--AGAAGCGATAAGC-AGAT--A-ATG-AGAA--GAACAGTGGTGGCAGT 1748
| | || | |||||| | |||| | || | ||| |||| ||||||| || |||||
Sbjct 1592 ATAACGAGCGGGAGAAGC-AGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGTTGCAGT 1650
Query 1749 TGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATATGGACGAAGCTCT-GA 1807
||||||||| |||| |||| |||| ||||| || ||||| ||||| |||||||| |
Sbjct 1651 AGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGCTCTCGT 1710
Query 1808 -GAGATATACTGGGAGAAGATGTG-GCTCAACACGTAGTGGTGAAGGCCATGGAAGATGG 1865
||||||| | |||||||| ||| | |||| |||| ||||| || ||||||||||||||
Sbjct 1711 TGAGATAT--TAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAAAGCCATGGAAGATGG 1767
Query 1866 TTCCAGCATTGGCTCTGC 1883
||| ||||||||||||||
Sbjct 1768 TTCTAGCATTGGCTCTGC 1785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5