BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20040.1 Length=2039 Score E Sequences producing significant alignments: (Bits) Value Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1 3048 0.0 Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1 1210 0.0 > Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1 Length=1970 Score = 3048 bits (1650), Expect = 0.0 Identities = 1824/1908 (96%), Gaps = 11/1908 (1%) Strand=Plus/Plus Query 32 ATCAATCTCTCCCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTTACCGGGATTTGT 91 ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1 ATCAATCTCTCTCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTCGCCGGAATTTGT 60 Query 92 TGTCTACAAGGGAACC-TCGAGCGCAAGGCTGTTTAATCGGAAGAATCTGGAGTCACGGA 150 |||||||| || ||| |||||||||||||| ||||||||||||||| |||||||||||| Sbjct 61 CGTCTACAACGG-ACCTTCGAGCGCAAGGCTATTTAATCGGAAGAATTTGGAGTCACGGA 119 Query 151 GAAGCAAAAATGAACAAAAAGAGAGACCCTTTATGCTGAGACGGTTTAATTTTGTATCTG 210 | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 120 GGAGCAAAAA--AACAAAAAGAGAGACCCTTTATGCTGAGACGGTTTAA-TTTGTATCTG 176 Query 211 TGGTTATAGAAAGGAATCGTTTGCGATGAAATGGAGCCTTATAGGGTTATTCTGATCGGT 270 |||||||||||||||| | |||| |||||||||||| || || ||||||||||||||| Sbjct 177 TGGTTATAGAAAGGAA---TATGCGTTGAAATGGAGCCGTAGAGAGTTATTCTGATCGGT 233 Query 271 GGTTGAAGCGTTGTCATTTGCATTTCGTGTCATTCTGGTTATAGACTCTGTTTCAATTGC 330 ||||||||| ||||||| |||||||||||||| |||| ||||||||||| ||| |||||| Sbjct 234 GGTTGAAGCTTTGTCATCTGCATTTCGTGTCAATCTGATTATAGACTCT-TTTAAATTGC 292 Query 331 TTCTCGTCGTAAAGGCGTTTGCTTTTGTGAGTAATTTATCTCGATTCTTCTGAAAGACGT 390 ||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||| Sbjct 293 TTCTCGTCGTAAAGGCGCTTGCTTTTGTGGGTAACTTATCTCGATTTTTCTGAAAGACGT 352 Query 391 AGAAAGAGAGAAGGTTGTGTATAGATA-TTGGAAATGGGGAAGGTTTTGGTGATGTTGAC 449 ||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| Sbjct 353 AGAAAGAGACAAGGTTGTGTGTAGATATTTGG-AATGGGGAGGGTTTTGGTGATGTTGAC 411 Query 450 GGCAGCTGCGGCTGTGGTGGCTTGTTCAGTGGCGACTGTGATGGTGAGAAGGAGGATGAA 509 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 412 GGCAGCTGCGGCTGTGGTGGCTTGTTCAATGGCGACGGTGATGGTGAGAAGGAGGATGAA 471 Query 510 AGGGAGGAGGAAATGGAGGAGGGTGGTGGGTTTACTTAAGGATTTGGAGGAAGCTTGTGA 569 |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 472 AGGGAGGAGGAAGTGGAGGAGGGTGGTGGGTATACTTAAGGATTTGGAGGAGGCTTGTGA 531 Query 570 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGG 629 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 532 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCTATAGCTGTGGAGATGCAAGCTGG 591 Query 630 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTTCC 689 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 592 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGCTGCTCACTTTTGTTGATGATCTTCC 651 Query 690 CAATGGGAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGAT 749 ||||| |||||||| |||||| ||||| || ||||||||||||||||| ||||||||||| Sbjct 652 CAATGAGAGCGAGAGAGGAACTTATTACGCCCTTCATCTTGGAGGCTCTTACTTTAGGAT 711 Query 750 AATAAAGGTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACA 809 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 712 AATAAAGGTTCATCTGGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGGCA 771 Query 810 TTCCATACCAACATCTTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATC 869 ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 772 TTCCATACCGACATCTTTGATGAACAGCACCAGCGAGGTTCTCTTCGACTTTCTCGCATC 831 Query 870 ATCCTTGCAGAGGTTTATTGAAAAAGAAGGGAACGATTTCAGTTTGTCACAACCTTTAAA 929 |||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||| Sbjct 832 ATCCTTGCAGAGGTTTATTGAAAAGGAAGGGAACGATTTCAATTTGTCGCAACCTGTAAA 891 Query 930 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGT 989 ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 892 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAAACATCTATTTCATCAGGAGT 951 Query 990 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1011 Query 1050 ATGTCTACAAGGAGCGTTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1109 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 ATGTCTACAAGGAGCATTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1071 Query 1110 TGATACTGTTGGGGCTTTATCCTTTGGACATTTTCATGACCCAGACACAATTGCTGCTGT 1169 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1072 TGATACTGTTGGGGCATTATCCTTTGGACATTTTCATGACCCAGACACAATTGCCGCTGT 1131 Query 1170 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1191 Query 1230 TCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1289 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 TCAAAATCCACGCACAACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1251 Query 1290 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1311 Query 1350 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1371 Query 1410 AGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCATTTTATC 1469 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1372 AGTAATTCTTCGAATGTCACAAGAGTCTGACATCTTTGGACCCATCTCATCCATTTTATC 1431 Query 1470 CACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCCGA 1529 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1432 TACGCCTTTTGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCTGA 1491 Query 1530 GTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCAATGAAGGT 1589 |||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1492 GTTACAAGAAGTAGCAAGAATTTTGAAAGATTTAGGGGTGTCAGAGGTACCATTGAAGGT 1551 Query 1590 GAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1649 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1552 GAGGAAACTTGTAGTGAAGATATGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1611 Query 1650 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGGAGGAAGGAG 1709 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1612 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGTGGAGGAGGAAGGAG 1671 Query 1710 AAGCGATAAGCAGATAATGAGAAGAACAGTGGTGGCAGTTGAAGGAGGTCTGTATTTGAA 1769 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1672 AAGCGATAAGCAAATAATGAGAAGAACAGTGGTGGCAGTAGAAGGAGGTCTGTATTTGAA 1731 Query 1770 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1732 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1791 Query 1830 GGCTCAACACGTAGTGGTGAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1889 ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1792 GGCTCAACATGTAGTCGTTAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1851 Query 1890 GCTGGCTTCGTCACAAAGTGTTCAAACAATACCATCCGTATGAATAAT 1937 | ||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1852 GTTGGCTTCCTCACAAAGTGTTCAAACCATACCATCCGTATGAATAAT 1899 > Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1 Length=2007 Score = 1210 bits (655), Expect = 0.0 Identities = 1201/1458 (82%), Gaps = 63/1458 (4%) Strand=Plus/Plus Query 462 TGTGGTGGCTTGTTCAGTGGCGACTGTGATGG-TGAGAAGGAGGAT-GAAAGGGAGGAGG 519 ||||| ||||||||| || ||| | ||||||| || | |||||||| || | | ||||| Sbjct 355 TGTGGCGGCTTGTTCTGTTGCGGCGGTGATGGTTG-GGAGGAGGATGGAGA-GTCGGAGG 412 Query 520 AAATGGAGGAGGGTGG-TG-GGTTTACTTAAGGATTTGGAGGAAGCTTGTGAGACGCCTT 577 |||||||||| |||| || | ||| | || || |||||||| | |||||| || || Sbjct 413 AAATGGAGGACTGTGGTTGAGATTT--TGAAAGAATTGGAGGATGATTGTGATACTCCGG 470 Query 578 TAGGAAGGTTGAGGC-AGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGGTTTGGTT 636 | || |||||||||| || |||||||||| || || ||||||||||| ||||| |||| | Sbjct 471 TGGGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCGGTGGAGATGCACGCTGGATTGGCT 529 Query 637 TCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTT-CCCAATGG 695 ||||||||||| || |||||||||||| | |||||||| || |||||| || |||| ||| Sbjct 530 TCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACTTTCGTCGATGAT-TTGCCCACTGG 588 Query 696 GAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGATAATAAA 755 ||| |||| |||||| |||||||||||||| ||||||||| | || |||||||| | || Sbjct 589 GAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGAGGCACTTATTTTAGGAT-TTTAA 647 Query 756 G-GTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACATTCC- 813 | |||| ||| ||||||||||| || | ||| || ||||||||||| |||||||| || Sbjct 648 GAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTTCAAGATGTCGAACGACA-CCCA 706 Query 814 ATACCAACATC-TTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATCATC 872 ||||| || | ||||||||||||||| ||||||||||| ||| |||||||||| | || Sbjct 707 ATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTTCAACTTTCTCGCTTTTTC 765 Query 873 CTTGCAGAGGTTTATTGAAAAAGAAGG-GAACGATTTCAGTTTGTCACAACCT-TTAAAA 930 |||| | |||||||||| ||||| ||| |||| | || | |||||| | || | | Sbjct 766 CTTGGAAAGGTTTATTG-AAAAGGAGGAAAACGGGTCCA--AT-TCACAAGGTGTT-AGA 820 Query 931 AGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGTT 990 ||||||||||| ||||| ||||| ||||| |||||||| || || || || ||||||||| Sbjct 821 AGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCTATTTCTTCAGGAGTT 880 Query 991 CTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049 ||||| ||||||||||||||||||| | ||||||||||||| ||| |||| || ||||| Sbjct 881 CTAATCAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTTGGACAAGATATAGCTGA 939 Query 1050 ATGTCTACAAGGAGCG-TTGAACAAG-AGAGGGCTAGATATTCGCGTTGCAGCTCTTGTG 1107 |||||||||||||||| || ||| || ||||| |||||||| | ||||| | ||||||| Sbjct 940 ATGTCTACAAGGAGCGCTT-AAC-AGAAGAGGCCTAGATATGCACGTTGGGGTTCTTGTG 997 Query 1108 AATGATACTGTTGGG-GCTTTATC-CTTTGGACATTTTCATGACCCAGACACAATTGCTG 1165 |||||||||| |||| || || || | ||||| ||| |||||| ||||||||| ||| || Sbjct 998 AATGATACTG-TGGGAGCCTTGTCGC-TTGGATATTATCATGATCCAGACACACTTGTTG 1055 Query 1166 CTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTT-GAACGAACTGATGCCATAATC 1224 | ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1056 CGGTTGTGTTTGGAACAGGTAGTAATGCATGTTA-CTTGGAACGAACTGATGCCATAATT 1114 Query 1225 AAGTGTCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAAC 1284 |||||||| || | || |||||||| ||||||||||||||||||||||||||||| Sbjct 1115 AAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAGTGGGGAAAT 1174 Query 1285 TTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATG 1344 |||||||| || | | |||| |||||| | |||||| |||| ||||||||||||||| | Sbjct 1175 TTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCAGAGAGT-TC 1233 Query 1345 AATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGT 1403 || | ||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||| Sbjct 1234 AAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGTGACATTGT 1293 Query 1404 CCGCAGAGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCAT 1463 || |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct 1294 TCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATCTCGCCCGT 1353 Query 1464 TTTATCC-ACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACA 1522 ||||| | ||||| |||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 1354 GTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAAGATGACA 1412 Query 1523 CATCC-GAGTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCA 1581 || || |||||||||||||||||| ||||||||||||| || ||||| ||||| |||||| Sbjct 1413 CA-CCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGATGTACCA 1471 Query 1582 ATGAAGGTGAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGG 1641 |||||||||| ||||| || ||||| || ||||| || || ||| | ||||||| ||| Sbjct 1472 GTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCAGGGAGG 1531 Query 1642 CTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGG- 1700 ||||||||||||||||| |||||||||||||||||| |||| ||||||| || ||||| Sbjct 1532 CTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGTGGAGGG 1591 Query 1701 AGGA--AG-G--AGAAGCGATAAGC-AGAT--A-ATG-AGAA--GAACAGTGGTGGCAGT 1748 | | || | |||||| | |||| | || | ||| |||| ||||||| || ||||| Sbjct 1592 ATAACGAGCGGGAGAAGC-AGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGTTGCAGT 1650 Query 1749 TGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATATGGACGAAGCTCT-GA 1807 ||||||||| |||| |||| |||| ||||| || ||||| ||||| |||||||| | Sbjct 1651 AGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGCTCTCGT 1710 Query 1808 -GAGATATACTGGGAGAAGATGTG-GCTCAACACGTAGTGGTGAAGGCCATGGAAGATGG 1865 ||||||| | |||||||| ||| | |||| |||| ||||| || |||||||||||||| Sbjct 1711 TGAGATAT--TAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAAAGCCATGGAAGATGG 1767 Query 1866 TTCCAGCATTGGCTCTGC 1883 ||| |||||||||||||| Sbjct 1768 TTCTAGCATTGGCTCTGC 1785 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76675663185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5