BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20070.1 Length=1420 Score E Sequences producing significant alignments: (Bits) Value Ahg318761 jgi|Araly1|318761|fgenesh1_pm.C_scaffold_3001777 1127 0.0 > Ahg318761 jgi|Araly1|318761|fgenesh1_pm.C_scaffold_3001777 Length=870 Score = 1127 bits (610), Expect = 0.0 Identities = 791/874 (91%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 294 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACACCAAACTCCAGAAGAAGAAATAT 353 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | Sbjct 1 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACTCCAAACTCAAGAAGAAGAAAT-T 59 Query 354 -TCCGAATACGATGAGATTAATAAGGAACAAGAAGAGAAATTCCTTACCTTTGTTTCAGC 412 ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| Sbjct 60 CTCCGAATACGATGAGGTTAATAGGGAACAAGAAGAGAAATTCCTTAATTTTGTTTCAGC 119 Query 413 CTCAGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAGTTCT-CTGGAGATGGTTG 471 ||| ||||||||||||||||||||||||||||||||||||| || | |||||||| || | Sbjct 120 CTCGGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAATT-TGCTGGAGATAGTGG 178 Query 472 AGAAGTTGA-G---G-AATGA----AAT----CAT-T---TC--A-ATCA-GATCTGGCA 510 |||| ||| | | ||||| ||| ||| | || | || | ||||||||| Sbjct 179 AGAAAATGAGGAATGAAATGACTTCAATCAGGCATGTACATCATATATTACGATCTGGCA 238 Query 511 GGGACGACAAGT-TTCTGGAGTGTCAAAAGCTTCTCATGGAAGAAGAACTAAAGAACAAA 569 |||||||||||| || |||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 239 GGGACGACAAGTGTT-TGGAGTATCAAAAGCTTCTCAGGGAAGAAGAACAAAAGAACAAA 297 Query 570 TCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTCCAAGAGGAACATCCTCGCAAC 629 ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 298 GCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTGAAAGAGGGACATCCTCGCAAC 357 Query 630 TATGAAGATCAAAGTGGaaaaaaaCAAAAGAGAAAGACTCCTGAAAGTGCTCGAGTTACA 689 || |||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||| Sbjct 358 TACGAAGATCAAAGTGGAAGAAAACAAAAGACAAAGACACCTGAAACTGCTCGAGTTACA 417 Query 690 ACGAGAAGCATGATAAAACGTAGCAGACTGTCAGAAGATTTGGTGGAAACGGATATGGTA 749 ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||| Sbjct 418 ACGAGAAGCATGAGAAAACGTAGCAGACTGTCAGAAGATATGGTGGAAACGGACATAGTA 477 Query 750 TCACCTGACATTAGCAAACATCATAAAGCAAAGGAGCCTCTCTTGGTTTCTCAGCCACAA 809 |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 478 TCACCTCAGATTAGCAAACATCATAAAGCAAAGGAAACTCTCTTGGTTTCTCAGCCACAA 537 Query 810 TGCTGCAGAACAACCTACGATGGATCAAGTAGTTCTGCTAGTTGTACATTTCAAGCTCTT 869 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 538 TGCTGCAAAACAACCTACGATGGATCAAGTTGTTCTGCTAGTTGTACATTTCAAGCTCTT 597 Query 870 GGCAAACACTTGCTAGGAATGAAATTATCAACTAATAAT-AAGGGCAAACGCGCCTGCAT 928 ||| |||||||||||||||||||||| |||||||||||| || ||| ||| || |||||| Sbjct 598 GGCGAACACTTGCTAGGAATGAAATTGTCAACTAATAATGAA-GGCGAACACGACTGCAT 656 Query 929 TGTAGCCTCACACCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAA 988 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TGTAGCCTCACATCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAT 716 Query 989 TGGTGAAGAATCTGAGCTGCTTTACAAGCCTGCATCACTCGGAACATTTCAAAGAGTGGC 1048 ||||||||||||||||||||| ||| || || ||| ||||||||||| ||||||||||| Sbjct 717 TGGTGAAGAATCTGAGCTGCTCTACGAGGTTGTATCGCTCGGAACATTCCAAAGAGTGGC 776 Query 1049 ACCGGAATGGATGAGAGAAGTTATAAAGTTCAGCACAAGTATGTGTCCCATCTTCTTTGA 1108 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 777 ACCGGAATGGATGAGAGAGGTTATAAAGTTCAGCACAAGTATGTGTCCGGTCTTCTTTGC 836 Query 1109 AAGAGTCTCTCGAGTCATTAAGCTCAATTGTTGA 1142 ||||||||||||||||||||||||| |||||||| Sbjct 837 AAGAGTCTCTCGAGTCATTAAGCTCTATTGTTGA 870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53097801530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5