BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20070.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318761 jgi|Araly1|318761|fgenesh1_pm.C_scaffold_3001777 1127 0.0
> Ahg318761 jgi|Araly1|318761|fgenesh1_pm.C_scaffold_3001777
Length=870
Score = 1127 bits (610), Expect = 0.0
Identities = 791/874 (91%), Gaps = 29/874 (3%)
Strand=Plus/Plus
Query 294 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACACCAAACTCCAGAAGAAGAAATAT 353
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 1 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACTCCAAACTCAAGAAGAAGAAAT-T 59
Query 354 -TCCGAATACGATGAGATTAATAAGGAACAAGAAGAGAAATTCCTTACCTTTGTTTCAGC 412
||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 60 CTCCGAATACGATGAGGTTAATAGGGAACAAGAAGAGAAATTCCTTAATTTTGTTTCAGC 119
Query 413 CTCAGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAGTTCT-CTGGAGATGGTTG 471
||| ||||||||||||||||||||||||||||||||||||| || | |||||||| || |
Sbjct 120 CTCGGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAATT-TGCTGGAGATAGTGG 178
Query 472 AGAAGTTGA-G---G-AATGA----AAT----CAT-T---TC--A-ATCA-GATCTGGCA 510
|||| ||| | | ||||| ||| ||| | || | || | |||||||||
Sbjct 179 AGAAAATGAGGAATGAAATGACTTCAATCAGGCATGTACATCATATATTACGATCTGGCA 238
Query 511 GGGACGACAAGT-TTCTGGAGTGTCAAAAGCTTCTCATGGAAGAAGAACTAAAGAACAAA 569
|||||||||||| || |||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 239 GGGACGACAAGTGTT-TGGAGTATCAAAAGCTTCTCAGGGAAGAAGAACAAAAGAACAAA 297
Query 570 TCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTCCAAGAGGAACATCCTCGCAAC 629
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 298 GCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTGAAAGAGGGACATCCTCGCAAC 357
Query 630 TATGAAGATCAAAGTGGaaaaaaaCAAAAGAGAAAGACTCCTGAAAGTGCTCGAGTTACA 689
|| |||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||
Sbjct 358 TACGAAGATCAAAGTGGAAGAAAACAAAAGACAAAGACACCTGAAACTGCTCGAGTTACA 417
Query 690 ACGAGAAGCATGATAAAACGTAGCAGACTGTCAGAAGATTTGGTGGAAACGGATATGGTA 749
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 418 ACGAGAAGCATGAGAAAACGTAGCAGACTGTCAGAAGATATGGTGGAAACGGACATAGTA 477
Query 750 TCACCTGACATTAGCAAACATCATAAAGCAAAGGAGCCTCTCTTGGTTTCTCAGCCACAA 809
|||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TCACCTCAGATTAGCAAACATCATAAAGCAAAGGAAACTCTCTTGGTTTCTCAGCCACAA 537
Query 810 TGCTGCAGAACAACCTACGATGGATCAAGTAGTTCTGCTAGTTGTACATTTCAAGCTCTT 869
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 TGCTGCAAAACAACCTACGATGGATCAAGTTGTTCTGCTAGTTGTACATTTCAAGCTCTT 597
Query 870 GGCAAACACTTGCTAGGAATGAAATTATCAACTAATAAT-AAGGGCAAACGCGCCTGCAT 928
||| |||||||||||||||||||||| |||||||||||| || ||| ||| || ||||||
Sbjct 598 GGCGAACACTTGCTAGGAATGAAATTGTCAACTAATAATGAA-GGCGAACACGACTGCAT 656
Query 929 TGTAGCCTCACACCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAA 988
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGTAGCCTCACATCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAT 716
Query 989 TGGTGAAGAATCTGAGCTGCTTTACAAGCCTGCATCACTCGGAACATTTCAAAGAGTGGC 1048
||||||||||||||||||||| ||| || || ||| ||||||||||| |||||||||||
Sbjct 717 TGGTGAAGAATCTGAGCTGCTCTACGAGGTTGTATCGCTCGGAACATTCCAAAGAGTGGC 776
Query 1049 ACCGGAATGGATGAGAGAAGTTATAAAGTTCAGCACAAGTATGTGTCCCATCTTCTTTGA 1108
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 777 ACCGGAATGGATGAGAGAGGTTATAAAGTTCAGCACAAGTATGTGTCCGGTCTTCTTTGC 836
Query 1109 AAGAGTCTCTCGAGTCATTAAGCTCAATTGTTGA 1142
||||||||||||||||||||||||| ||||||||
Sbjct 837 AAGAGTCTCTCGAGTCATTAAGCTCTATTGTTGA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5