BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20075.1
Length=338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929929 jgi|Araly1|929929|scaffold_302386.1 449 5e-126
Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1 231 2e-60
> Ahg929929 jgi|Araly1|929929|scaffold_302386.1
Length=355
Score = 449 bits (243), Expect = 5e-126
Identities = 293/317 (92%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 21 ATGCTTATGATGATAGATCCTGAATCTTGGTGATG-TCCTAATGAGTTTAAGCCAGAGAG 79
|||| ||| |||| ||||||||| |||||| || | ||||||||||||||||||||||||
Sbjct 16 ATGC-TATTATGAGAGATCCTGATTCTTGG-GAAGATCCTAATGAGTTTAAGCCAGAGAG 73
Query 80 GTTTTTAGCTTCTTTTGGATCAGGGCAAGACGATGCACTTCAGTACATTCTTTTCGGAAG 139
|||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||
Sbjct 74 GTTTTTAGCTTCTTTTGGATCAGGGCAAGAAGATGCACTTAAGTACATTCCTTTCGGGAG 133
Query 140 CGGAAGGAGATGCTGTCTGGGAGTAAATCTGAGTTACATCTTTGTAGGAACTGCGATTGG 199
|||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 134 CGGAAGGAGAGGCTGTCCGGGAGTAAATCTGAGTTACATCTTTGTAGGAACCGCGGTTGG 193
Query 200 AATGATGTTGCAATGCTTTGACTGGAAAACCAAAGGAGACAAGGTTGACATGGAAGAGGC 259
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 194 AATGATGGTGCAATGCTTTGACTGGAAAATCAAAGGAGAAAAGGTTGACATGGAAGAGGC 253
Query 260 CATTCGAGGATTGAACCTGACCATGGCTCATCCCCTTAAGTGCATTCCTGTTGCTAGAAA 319
|||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 254 CATTGGAGGACTGAACCTGACCATGGCGCATCCCCTCAAGTGCATTCCTGTTGCTAGAAC 313
Query 320 CCTAAACCCTTTGGCTT 336
||||||||||||| |||
Sbjct 314 CCTAAACCCTTTGACTT 330
> Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1
Length=1489
Score = 231 bits (125), Expect = 2e-60
Identities = 253/311 (81%), Gaps = 24/311 (8%)
Strand=Plus/Plus
Query 21 ATGCTTATGATGATAGATCCTGAAT-CTTGGTGATG-TCCTAATGAGTTTAAGCCAGAGA 78
|||| |||||||| |||||||| || ||||| || | || |||||||||||||||||||
Sbjct 1175 ATGC-TATGATGAGAGATCCTG-ATACTTGG-GAAGAGCCCAATGAGTTTAAGCCAGAGA 1231
Query 79 GGTTTTTAGCTTCTTTTGGATCAG--G-GCA-AGA-CG-ATGCACTTCAGTACATT-CTT 131
||||| ||| ||| ||| || | | | ||| | ||| |||| |||||||| |||
Sbjct 1232 GGTTTCTAGGTTC---AGGAAAAGAAGAGGAGAGAGAGCATGGACTTAAGTACATTCCTT 1288
Query 132 TTCGGAAGCGGAAGGAGATGCTGT-CTGGGAGTAAATCTGAG-TTACA-TCTTTGTAGGA 188
|| || |||||||| ||| ||||| || ||||||||||| || ||||| || |||| |||
Sbjct 1289 TT-GGTAGCGGAAGAAGAGGCTGTCCT-GGAGTAAATCT-AGCTTACATTC-TTGTTGGA 1344
Query 189 ACTGCGATTGGAATGATGTTGCAATGCTTTGACTGGAAAACCAAAGGAGACAAGGTTGAC 248
|| ||||||||| ||||| | || |||||||||||||||| ||||||||| || ||| ||
Sbjct 1345 ACGGCGATTGGAGTGATGGTACAGTGCTTTGACTGGAAAATCAAAGGAGATAAAGTTAAC 1404
Query 249 ATGGAAGAGGC-CATTCGAGGATTGAACCTGACCATGGCTCATCCCCTTAAGTGCATTCC 307
||||||||||| | | ||| | || | |||||||||||||||||||||||||||||||
Sbjct 1405 ATGGAAGAGGCTC-GTGGAGCACTGGTCTTGACCATGGCTCATCCCCTTAAGTGCATTCC 1463
Query 308 TGTTGCTAGAA 318
||||||| |||
Sbjct 1464 TGTTGCTCGAA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11980854946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5