BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20080.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1 2447 0.0
Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1 904 0.0
Ahg946792 jgi|Araly1|946792|scaffold_703021.1 562 3e-159
Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1 359 5e-98
> Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1
Length=1688
Score = 2447 bits (1325), Expect = 0.0
Identities = 1571/1692 (93%), Gaps = 8/1692 (0%)
Strand=Plus/Plus
Query 21 TCTTTCACTTTGAGCAATTATGGCAGCAATGAACATCGTTGACTTTCAAAACTGcttctt 80
|||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||| |
Sbjct 1 TCTTTCACTTTGAGCAGTTATAGTAGCAATGATCATCGTTGACTTTCAAAACTGCTTCAT 60
Query 81 ttttgtcctcttaagcctcttctcacttctctgttactctctcttcttcAGGAAACCAAA 140
|||| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 61 TTTTATCCTCTTAAGCCTCTTCTCGGTACTCTGTTACTCTCTCTTCTTTAGGAAACCAAA 120
Query 141 GGAACCTCGACTTCACTATGATTTACCTCCGAGCCCTCCGACTCTTCCCATCATTGGTCA 200
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 121 AGAACCTCGACTTCACTTTGATTTACCTCCGAGCCCTCCGTCTCTTCCGATCATCGGTCA 180
Query 201 TCTTCACCTTCTTCTCTCTGTTCTAGTCCACAGATCTTTACAGACACTCTCCACCAAGTA 260
||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 181 TCTTCACCTTCTTCTCTCTGTTCTAATCCACAGATCTTTACTGAAACTCTCCATCAAGTA 240
Query 261 TGGGTCTATTCTCTATCTTCGCGTCTTCAGTTTCCCTGTAGCCCTCGTCTCCTCAGCATC 320
|| ||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||
Sbjct 241 CGGATCTATTCTCTATCTTCGGGTCTTTAGATTCCCTGTAGCCCTCATCTCCTCAGCATC 300
Query 321 TATTGCTTATGAGATCTTCAGGGAACACGACGTGAACATCTCGTCTCGTGGTTTCCCTCC 380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 301 AATTGCTTATGAGATCTTCAGGGAACACGACGTTAACATCTCGTCTCGTGGTTTCCCTTC 360
Query 381 TACCGATGATTCCCTTTTTGCTGGATCTTTCAGCTTCACCTCTGCTCCCTATGGAGATTA 440
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GACCGATGATTCCCTTTTTGCCGGATCTTTCAGCTTCACATCTGCTCCCTATGGAGATTA 420
Query 441 CTGGAAGTTCATGAAGAAGCTCCTGGTCACGAACTTGCTTGGACCCCAGGCACTCGAGCG 500
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 421 CTGGAAGTTCATGAAGAAGCTCCTGGTTACGAACTTGCTTGGAGCCCAGGCACTCGAGCG 480
Query 501 GTCACGAGGATTCCGTGCAGATGAGCTAGATCTGTTTTACGAGAACCTGTTGGATAAAGC 560
||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 481 GTCACGAAGAGTCCGTGCAGATGAGCTAGATCGGTTTTACAAGAACCTGTTGGATAAAGC 540
Query 561 GATGAAGAAGGAGAGCGTGGATATCTGTGTGGAGGCGTTGAAGCTCAGTAACAACAGCAT 620
|||||| || ||||||||||| || |||| ||| |||||||||||||||||||||| |||
Sbjct 541 GATGAATAAAGAGAGCGTGGAGATATGTGCGGAAGCGTTGAAGCTCAGTAACAACATCAT 600
Query 621 CTGCAAGATGATCATGGGGAGGAGTTGTTCAGAGGAGAATGGTGAGGCAGAGAGAGTTAG 680
||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 601 CTGCAAGTTGATCATAGGGAGGAGTTGTTCAGAGGAGAATGGTGAGGCGGAGAAAGTCAG 660
Query 681 GGCTTTGGCTACCCAGTTAGATGGCTTGACGAAGAAGATCTTATTGGCGAACATGTTGCG 740
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GGCTTTGGCTACCGAGTTAGATGGCTTGACGAAGAAGATCTTATTGGCAAACATGTTGCG 720
Query 741 TGCGGGGTTTAAAAAGCTTGTTGTCTCACTGTTTAGAAAGGAAATGATGGATGTTTCCAG 800
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACCAGGGTTTAAAAAGCTTGTTGTCTCACTGTTTAGAAAGGAAATGATGGATGTTTCCAG 780
Query 801 CAGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAACATGAAGATAAACTGGACATGCA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GAGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAACATGAAGATAAACTGGACAGGCA 840
Query 861 TCATCAAGGTACAGACTTAGTGGACGCGTTGTTGGCAGCTTGTCGGGACAAAAATGCAGA 920
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 TCATCAAGGTACAGACTTAATGGACGCGTTGTTGGCAGCTTATCGGGACAAAAATGCAGA 900
Query 921 GTATAAGATCTCTAGGAACCATATCAAGTCGTTTTTCGCGGATCTCTTATTTGCAAGCAC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GTATAAGATCTCTAGGAACCATATCAAGTCGTTTTTCGCGGATCTCTTATTTGCAGGCAC 960
Query 981 TGACACCTTTGTGCAAACAACACAGTGGACAGTGGCGGAGATCATTAATAACCCTAATGT 1040
|||||||| |||||||||||||||||| || ||||||||||||| || |||||||| ||
Sbjct 961 CGACACCTTGGTGCAAACAACACAGTGGGCAATGGCGGAGATCATGAACAACCCTAAAGT 1020
Query 1041 TCTTGAGAGATTGAGAGGAGAAATCGATTCCGTGGTCGGGAAAGCAA-GGTTGATTCAAG 1099
|||||||||||||||||||||||| ||||||||||| || |||| || |||| |||||||
Sbjct 1021 TCTTGAGAGATTGAGAGGAGAAATTGATTCCGTGGTAGG-AAAGAAAAGGTTAATTCAAG 1079
Query 1100 AAACTGATTTGCCAAACCTCCCTTATTTGCAAGCGGTGGTCAAGGAAGGGCTAAGACTGC 1159
|||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1080 AAACTGATTTACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGACTGC 1139
Query 1160 ATCCGCCGGGGCCTCTCTTTGCAAGGTTCTCCCAAGAAGGGTGTAGGATCGGAGGGTTCT 1219
| || ||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 1140 ACCCTCCGGGTCCTCTCTTTGGAAGGTTCTCCCAAGAAGGGTGTAGGATTGGAGGGTTTT 1199
Query 1220 ATGTACC-GGAGAAAACAACA-TTAATGATTAATGCTTATGCTGTGATGAGAGATTCTGA 1277
||||||| ||| ||||||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 1200 ATGTACCAGGA-AAAACAATACTTA-TGGTTAATGCTTATGCTGTGATGAGAGATTCTGA 1257
Query 1278 TTCTTGGGAAGATCCTGATGAGTTTAAACCAGAGAGGTTTCTAGCTTCGTCAAGATCAGA 1337
||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1258 TTCTTGGGAAGTTCCTGATGATTTTAAGCCAGAGAGGTTTCTAGATTCGTCAAGATCAGA 1317
Query 1338 GCAGGAAAAGGAGAGAAGAGAGCAAGCAATTAAGTACATTGCTTTCGGAAGCGGACGAAG 1397
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1318 GCAGGAAAAGGATAGAAGAGAGCAAGCGATTAAGTACATTGCTTTCGGAAGTGGAAGAAG 1377
Query 1398 AAGCTGTCCTGGAGAAAATCTAGCATATATCTTTTTAGGAACTGCAATTGGAGTGATGGT 1457
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1378 AAGCTGTCCTGGAGAAAATCTAGCATATATCTTTATAGGAACTGCAATTGGAGTGATGGT 1437
Query 1458 ACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAGTTAACATGGAAGAGGCTAAT-GTAG 1516
|||||||||||||||||||||||||||||||||| |||||||||||||| | | | ||||
Sbjct 1438 ACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAATTAACATGGAAGAGAC-AGTTGTAG 1496
Query 1517 GACTGAGCTTGACCATGGCTTATCCTCTTAAGGTCACTCCTGTTCCTCGAACCCTAGTCC 1576
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| |||
Sbjct 1497 GACTGAGCTTGACCATGGCTCATCCTCTTAAGATCACTCCTGTTGCTCGAACACTAATCC 1556
Query 1577 CCTTAACTCAGAATCCACTGAACCGGAGTTCATGAATCTTTGGTAAGTAATTAGGTAGCC 1636
| |||||| ||||||| ||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 1557 CTTTAACTTAGAATCCGCTGAATCGGAGTTCATGAATCTTTGCTAAGTGATTAGGTAGCC 1616
Query 1637 TTGTTTTTACGTTACCGTGTCTGAGTTTACTGGTTTAGTTTGGCTAATGTGTGAAACCGT 1696
|| ||||| ||||||||||||||||| ||| |||||||||||| |||| |||||||||
Sbjct 1617 ATGCTTTTATATTACCGTGTCTGAGTTTTCTGTTTTAGTTTGGCTTATGTTTGAAACCGT 1676
Query 1697 AAACAATTGTGT 1708
||||||||||||
Sbjct 1677 AAACAATTGTGT 1688
> Ahg493358 jgi|Araly1|493358|fgenesh2_kg.7__2791__AT4G15350.1
Length=1564
Score = 904 bits (489), Expect = 0.0
Identities = 1208/1541 (78%), Gaps = 105/1541 (7%)
Strand=Plus/Plus
Query 86 tcctcttaagcctcttctcactt-ctctgttactctctcttcttcAGGAAACCAAAGGAA 144
|||||||| | |||||| || || |||||||||||||||||||||| ||||||||||| |
Sbjct 23 TCCTCTTATGTCTCTTCACA-TTCCTCTGTTACTCTCTCTTCTTCATGAAACCAAAGG-A 80
Query 145 C-CTCGACTTCACTATGA-TTTACCTCCGAGCCCTCCGACTCTTCCCATCATTGGTCATC 202
| | ||| | || ||| || |||||||| ||||| ||||||| ||||| |||||||
Sbjct 81 CTCACGAGATGACCGTGACCTT-CCTCCGAGTCCTCCTTCTCTTCCTATCATCGGTCATC 139
Query 203 TTCACC---TTCTTCTCTCT-GTTCTAGTCCAC-AGATCTTTACAGACACTCTCCA-CCA 256
|||||| ||||||||||| || || |||| || ||||| |||| ||||| || |||
Sbjct 140 TTCACCTAATTCTTCTCTCTACTT-TAACCCACAAG-TCTTTTCAGAGACTCT-CATCCA 196
Query 257 AGTATGGGTCTATTCTCTATCTTCGCGTCTT-CA-GTTTCCCTGTAGCCCTCGTCTCCTC 314
||||||| || ||||| |||| ||| |||| || | ||||| | | ||||||||||||
Sbjct 197 AGTATGGACCTCTTCTCCATCTCCGCATCTTCCACG-TTCCC-ATTGTCCTCGTCTCCTC 254
Query 315 AGCATCTA-TTGCTTATGAGATCTTCAGGGAACACGACGTGAACATCTCGTCTCGTG-GT 372
|| || | | || || || ||||||||||| || |||||||| | || | ||| | |
Sbjct 255 GGCCTC-AGTGGCCTACGATATCTTCAGGGACCAAGACGTGAATGTATCCTTTCG-GCAT 312
Query 373 TTCCCTCCTACCGATGA-T-TCCCTTTTTGCTGGATC-TTTCAGCTTCA-CCTCTGCTCC 428
| |||||| | ||| || | || ||||||| ||||| | | ||||||| | | |||||
Sbjct 313 TCCCCTCCGATCGAGGAGTCTCTCTTTTTG--GGATCGTAT-AGCTTCATCAGC-GCTCC 368
Query 429 CTATGGAGATTACTGGAAGTTCATGAAGAAGCTCCTGGTCACGAA-CTTGCTTGGACCCC 487
||||||||||||||||| ||||||| ||||||| |||| || || || |||||||| |
Sbjct 369 TTATGGAGATTACTGGAAATTCATGAGGAAGCTCATGGTTACAAAGATT-CTTGGACCGC 427
Query 488 AGGCACTCGAGCGGTCACGAGGATTCCGTGCAGATGAGCTAGATCTGTTTTACGAGAACC 547
| |||||| ||||||||||| ||||||||| ||||||||| |||| ||| ||| | || |
Sbjct 428 AAGCACTCCAGCGGTCACGAAGATTCCGTGAAGATGAGCTTGATCGGTTCTACAAAAATC 487
Query 548 TGTTGGATAAAGCGATG-AAGAAGGAGAGCGTGGATATCTGTGTGGAGGC-GTTGAAGCT 605
| | ||||| |||| | |||||||||| || || ||| ||| ||| || | ||||||
Sbjct 488 TACTCGATAAGGCGA-GTAAGAAGGAGATTGTTGAGATCGGTGAGGAAGCAG-CGAAGCT 545
Query 606 CAGTAACAACAGCATCTGCAAGATGATCATGGGGAGGAGTTGTTCAGAGGAGAATGGTGA 665
|| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 546 CAATAACAACACCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGAGAGCGGTGA 605
Query 666 GGCAGAGAGAGTTAG-GGCTTTGGCT-ACCCAGTTAGATGGC-TTGACGAAGAAGATCTT 722
||||||||| || || ||||| || | || ||| | ||||| ||||| ||||| || ||
Sbjct 606 GGCAGAGAGGGTCAGAGGCTT-GG-TGACTGAGTCA-ATGGCCTTGACAAAGAAAATTTT 662
Query 723 ATTGGCGAACATGTT-G-CGTGCGGGGTTTAAAAAGCTTGTTG-TCTCACTGTTTAGAAA 779
||||||| ||| || | | | || || ||||| | | |||||||||| | |||
Sbjct 663 CTTGGCGACCATCTTTGACAAACCAC-TT-AAGAAGCTCGG-GATCTCACTGTTCAAAAA 719
Query 780 GGAAATGATG-GATGTTTCC-AGCAGATTT-GATGAGCTGCTCGA-AAGGATCCTTGTGG 835
||| || ||| | ||||||| | || | || || |||||||| || ||| || |||||||
Sbjct 720 GGAGATAATGAG-TGTTTCCCA-CA-AGTTCGACGAGCTGCTAGAGAAG-ATTCTTGTGG 775
Query 836 AACATGAAGATAAACTGGAC-ATGCATCATCAAGGTACAGACTT-AGTGGACGCGTTGTT 893
|||| |||| ||||||||| | | ||||||||||||| ||| | | |||| | ||||||
Sbjct 776 AACACAAAGAGAAACTGGACGAGG-ATCATCAAGGTACTGACATGA-TGGATGTGTTGTT 833
Query 894 GGCAGCTTGTCGGGACAAAAATGCAGAGTATAAGATCTCTAGGAACCATATCAAGTCGTT 953
|| ||||| | ||| |||| ||||||||||| ||| | || |||||||||||||| ||
Sbjct 834 GGAAGCTTATAAAGACGAAAACGCAGAGTATAAAATCACAAGAAACCATATCAAGTCCTT 893
Query 954 -TTTCGCGGATCTCTT-ATTTGCAAGCACTGACACCTTTGTGCAAACA--ACACAGTGGA 1009
||| | ||| || || ||| ||| |||||||||||| | | | || | ||||||||
Sbjct 894 GTTT-GTGGAACTTTTCATT-GCAGGCACTGACACCTCA-T-CGACCACTATACAGTGGA 949
Query 1010 -CAGTGGCGGAGATCATTAATAA-CCCTAATG-TTCTTGAGAGATTGAGAGGAGAAATCG 1066
|| |||||||||||||||| | ||| || | ||||||||||| | |||| |||||||
Sbjct 950 TCA-TGGCGGAGATCATTAACCATCCC-AA-GATTCTTGAGAGACTAAGAGAAGAAATCA 1006
Query 1067 ATTCCGTGGTCGGGAAA-GCAAGGTTGATTCAAGAAACTGATTTGCCAAACCTCCCTTAT 1125
||||||| || |||||| ||| | ||||||||||||||||| || || |||||||||||
Sbjct 1007 ATTCCGTTGTAGGGAAAAGCA-GATTGATTCAAGAAACTGACTTACCCAACCTCCCTTAC 1065
Query 1126 TTGCAAGCGGTGGTCAAGGAAGGGCTAAGACTGCATCCGCCGGGGCCTCTCTTTGC-AAG 1184
|||||||| | |||| |||||||||||| |||||||||||||||||||||| || |||
Sbjct 1066 TTGCAAGCAATAATCAAAGAAGGGCTAAGATTGCATCCGCCGGGGCCTCTCTT-GCCAAG 1124
Query 1185 GTTC--TCCCAAGAAGGGTGTAGGA-TCGGAGGGTTCTATGTACCGGAGAAAACAA--CA 1239
| ||| ||||| ||||| | | | |||||||| | |||| ||||| |||| |
Sbjct 1125 AA-CGGTCC-AAGAAAGGTGT-GAAATTAGAGGGTTCCACATACCAGAGAAGACAATTC- 1180
Query 1240 TTAATGATTAATGCTTATGCTGTGATGAGAGATTCTGATTCTTGGGAAGATCCTGATGAG 1299
||| || ||||| |||||||| | ||||||||| |||||| |||||||||||| || |||
Sbjct 1181 TTATTG-TTAATTCTTATGCTATAATGAGAGATCCTGATTATTGGGAAGATCCGGAGGAG 1239
Query 1300 TTTAAACCAGAGAGGTTTCTAGCTTCGTC-AAGATCAG-AGCAGGAAAAGGAGAGAAGAG 1357
|||||||| ||||||||| ||| || || |||||||| | || || | |||| |||||
Sbjct 1240 TTTAAACCTGAGAGGTTTTTAGGTTT-TCCAAGATCAGGA-CAAGAGGACGAGATAAGAG 1297
Query 1358 AGCAAG-CAATTAAGTACATTGCTTTCGGAAGCGGACGAAGAAGCTGTCCTGGAGA-AAA 1415
| || | | || || ||| |||| | |||||| | ||| | ||||||||| | |||
Sbjct 1298 ATAAATTCC-TAAAATATATTCCTTTTGCCAGCGGAAGGAGAGGTTGTCCTGGA-ACAAA 1355
Query 1416 TCTAGCAT-ATATCTTTTTAGGAACTGCAATTGGAGTGATGGTACAGGGATTTGAGTGGA 1474
|||||| | || ||| | ||||||| || ||||||||||||| ||| | ||||| ||||
Sbjct 1356 TCTAGC-TCATGTCTCTGTAGGAACCGCGGTTGGAGTGATGGTGCAGTGCTTTGATTGGA 1414
Query 1475 GAATCAAAGAAGAGAAAGTTAACATGGAA-GAGGCTAATGTAGGACTGA-GCTTGACCAT 1532
|||||||| ||||||||| |||||| || |||||| || | | || | ||||||||
Sbjct 1415 AAATCAAAGGAGAGAAAGTCAACATG-AATGAGGCTGCTGGAACAATGGTG-TTGACCAT 1472
Query 1533 GGCTTATCCTCTTAAG-GTCACTCCTGTTCCTCGAACCCTA 1572
|||| | ||||||||| | ||||||||||||||||||||||
Sbjct 1473 GGCTCACCCTCTTAAGTG-CACTCCTGTTCCTCGAACCCTA 1512
> Ahg946792 jgi|Araly1|946792|scaffold_703021.1
Length=1318
Score = 562 bits (304), Expect = 3e-159
Identities = 899/1177 (76%), Gaps = 78/1177 (7%)
Strand=Plus/Plus
Query 424 GCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCCTGGTCACGAA-CTTGCTTGG 482
||||||||||||||||||||||||||||||||||||||| ||| ||| || || || |
Sbjct 123 GCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCATGGCCACTAAGCTA-CTCCG 181
Query 483 ACCCCAGGCACTCGAGCGGTCACGAGG-ATTCCGTGCAGATGAGCTAGATCTGTTTTACG 541
||| || | || |||||||||||||| |||| ||| || || ||| | | |||||||
Sbjct 182 ACCGCAAGTGCTGGAGCGGTCACGAGGTATTC-GTGTTGAAGAACTACAGCGGTTTTAC- 239
Query 542 AGAACC-TGT-TGGATAAAGCGATGAAGAAGGAGAGCGTGGATATCTGTGTGGAG--GCG 597
|| | | | | | ||||| || | |||||| |||||||| || || || || || ||
Sbjct 240 AGGAGCAT-TCTCGATAAGGCCACGAAGAATGAGAGCGTTGAGAT-TG-GTAAAGAAGCA 296
Query 598 TTGAAGCTCA-GTAACAACAGCATCTGCAAGATGATCATGGGGAGGAGTTGTTCAGAGGA 656
||||||||| | ||||||| | | || || ||||||||||| ||||||| |||||||||
Sbjct 297 ATGAAGCTCATG-AACAACACCTTGTGTAAAATGATCATGGGAAGGAGTTTTTCAGAGGA 355
Query 657 GAATGGTGAGGCAGAGAGAGTTAGGG-CTTTG--GCT-ACCCAGTTAGATGGCTT-GAC- 710
|| ||||| || | ||||| |||| ||| | | | | | || | || ||| | |
Sbjct 356 CAACGGTGAATCAAATAGAGTCAGGGGCTTGGTTGATGAAAC-GT-A--TG-CTTTGTCA 410
Query 711 GAAGAAGATCTTATTGGCGAAC-ATGTTGCGTGCGGGG-T-TTAAAAAGCTT-GTTGTCT 766
|| |||||| || ||||| | | || ||||| | | | || |||||| | |||
Sbjct 411 GA-GAAGATATTCTTGGC-AGCTATATTGCG--CAGACCTCTTGCGAAGCTTCGGA-TCT 465
Query 767 CACTGTTTA-GAAAGGAAATGATGGATGTTTCCAGCAGATTTGATGAGCTGCTCGA-AAG 824
|||| || | |||| | || |||| |||||||| || ||| ||||||||||| || |||
Sbjct 466 CACTATTCAAGAAAC-AGATAATGGGTGTTTCCAACAAATTCGATGAGCTGCTAGAGAAG 524
Query 825 GATCCTTGTGGAACATGAAGATAAACTGGAC-AT--GCATCATCAAGGTACAGACT-T-A 879
|| ||| |||||| |||| |||||||| | | ||||| |||||| || | | |
Sbjct 525 -ATTCTTCAGGAACACAAAGAGAAACTGGAAGAGAAGAATCATGAAGGTATGGA-TATGA 582
Query 880 GTGGACGCGTTGTTGGCAGCTTGTCGG-GACAAAAATGCAGAGTATAAGATCTC-TAGGA 937
|||||| |||||||||||||| | || || |||| || |||||||||||| | | |||
Sbjct 583 -TGGACGTGTTGTTGGCAGCTTAT-GGAGATGAAAACGCTGAGTATAAGATCACAT-GGA 639
Query 938 ACCATATCAAGTCGTTTTTCGCGGA-TCTCTT-ATTTGCAAGCACTGACACCTTTGTGCA 995
| ||||||||| | ||||||| ||| | | || ||| | | ||||||| |||| |||||
Sbjct 640 AGCATATCAAGGCATTTTTCGTGGAGTTT-TTCATTGG-AGGCACTGATACCTCAGTGCA 697
Query 996 AACAACACAGTGGACAGTGGCGGAGATCATTAATAACCCTAATGTTCTTGAGAGATTGAG 1055
||||||||||||| || |||| ||||| || || || ||| ||||||||| ||| ||||
Sbjct 698 AACAACACAGTGGGCAATGGCCGAGATGATCAACAATTCTAGTGTTCTTGATAGACTGAG 757
Query 1056 AGGAGAAATCGAT-TCCGTGGTCGGG-AAAGCAAGGTTGATTCAAGAAACTGATTTGCCA 1113
|| |||||||| | ||||| || ||| ||| |||||||||| |||||||| ||||| |||
Sbjct 758 AGAAGAAATCG-TCTCCGTTGTAGGGGAAA-CAAGGTTGATCCAAGAAACAGATTTACCA 815
Query 1114 AACCTCCCTTATTTGCAAGCGGTGGTCAAGGAAGGGCTAAGACTGCATCCGCCGGGGCCT 1173
||||| |||||||||||||| ||||| ||||||| |||||| |||| || || ||
Sbjct 816 AACCTTCCTTATTTGCAAGCAGTGGTTAAGGAAGTTCTAAGATTGCACCCACCATCACCG 875
Query 1174 CTCTTTGCAAGGTTCTCCCAAGAAGGGTGT-AGGATCGGAGGGTTCTATG--TACCGGAG 1230
|||| | || | ||||||| ||| | | || ||| || | || ||||||||
Sbjct 876 GTCTTAATACGGAAGTTCCAAGAAAAATGTGAAG-TCAAAGGATT-T-TGCATACCGGAG 932
Query 1231 AAAACAACATTAAT-GATTAATGCTTATGCTGTGATGAGAGATTCTGATTCTTGGGAAGA 1289
|| |||||| | || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 933 AAGACAACACTCATTG-TTAATGCTTATGCTGTGATGAGAGATTATGATTCTTGGGAAGA 991
Query 1290 TCCTGATGAGTTTAAACCAGAGAGGTTTCTA-GCTTCGTCAAGATCAGAGCAGGAAAAGG 1348
|||||| | ||||| |||||||||||| || | || |||||||||| ||| || ||
Sbjct 992 TCCTGAAAAATTTAAGCCAGAGAGGTTTTTAAGTTTT-TCAAGATCAGGGCAAGA---GG 1047
Query 1349 A-GAGAAGAGAGCAAGCAA-TTAAGTACATTGCTTTCGGAAGCGGACGAAGAAGCTGTCC 1406
| ||||| |||||||| || ||| |||| || |||| || |||||| | ||| | |||||
Sbjct 1048 ACGAGAA-AGAGCAAG-AACTTAGGTACCTTCCTTTTGGCAGCGGAAGGAGAGGATGTCC 1105
Query 1407 TGGAGAAAATCTAGCATATATCTTTTTAGGAACTGCAATTGGAGTGATGGTACAGGGATT 1466
||||| |||||| | | ||| ||| ||||||| ||| | ||||||||||| ||| | ||
Sbjct 1106 TGGAGCAAATCTTGGTTCTATATTTGTAGGAACCGCAGTAGGAGTGATGGTGCAGTGCTT 1165
Query 1467 TGAGTGGAGAATCAAAGAAGAGAAAGTTAACATGGAAGAGGCTAATGTAGGACTGAGCTT 1526
||| |||| |||||||||||| || || |||||||||||| || || |||| ||| | |
Sbjct 1166 TGATTGGAAAATCAAAGAAGATAAGGTCAACATGGAAGAGACTTTTGAAGGAATGACCCT 1225
Query 1527 GACCATGGCTT-ATCCTCTTAAG-GTCACTCCTGTTC 1561
|| |||| || | || |||| | | |||||| ||||
Sbjct 1226 GAAAATGG-TTCACCCCCTTATGTG-CACTCCAGTTC 1260
> Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1
Length=1562
Score = 359 bits (194), Expect = 5e-98
Identities = 1065/1470 (72%), Gaps = 122/1470 (8%)
Strand=Plus/Plus
Query 159 TGATTTACCTCCGAGCCCTCCGACTCTTCCCATCATTGGTCATCTTCACCTTCTTCTCTC 218
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 111 TGATTTGCCTCCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCACCTTCTCCTCTT 170
Query 219 TG-TTCTAGTCCACA-GATCTTTACAGACACTCTCCA-CCAAGTATGGGTCTATTCTCTA 275
|| ||| | |||||| | | ||| || | | |||| | |||| || || || ||||| |
Sbjct 171 TGCTTCAA-TCCACAAG-TGTTTTCAAAAAATCTC-ATCCAAATACGGACCTTTTCTCCA 227
Query 276 TCTTCGCGTCTTC-AGTTTCCCTGT-AGCCCTCGTCTCCTCAGCATCTATTG-CTTATGA 332
||||||| | ||| | | |||| | | | | || ||||| || || | | |||| ||
Sbjct 228 TCTTCGCATTTTCCA-TGTCCCCATTATTCTT-GTGTCCTCTGCCTC-AGCGGCTTACGA 284
Query 333 GATCTTCAGGGAACACGACGTGAACA-TCTCGTCTCGTGGTT-TCCCTCCTACCGATGAT 390
||||||| || |||||| | || | |||| | ||| ||| | | | | ||||||
Sbjct 285 TATCTTCAAGGCACACGATATTAA-AGTCTCTTATCGAGGTGATGT-TGCAATCGATGAA 342
Query 391 TCCCTTTTTGCT-GGATCTTTCAGCTTCACCTCTG--CTCCCTATGGAGATTACTGGAAG 447
| | || | | | || |||| | | | | || | |||| | || ||||||||||||
Sbjct 343 TGCATTGT-GTTTGGTTCTT-CTGGAT-ATTTCAGAGCTCCATCTGAAGATTACTGGAAA 399
Query 448 TTCATGAAGAAGCTC--C-TGG-TCACGAACTTGCTTGGACCCCAGGCACTCGAGCGGTC 503
||||||| ||||||| | ||| | | | | |||||||||||| || || |||||| |
Sbjct 400 TTCATGAGGAAGCTCATCATGGCT-AGGG-C--GCTTGGACCCCAAGCGCTAGAGCGGAC 455
Query 504 ACGAGGA-TTCCGTGCAGATGAGCTAGATCTGTTTTACGAGAACCTGT--TGGATAAAGC 560
||| || ||| ||| || |||| |||| |||| | |||| | | | ||||| ||
Sbjct 456 ACGTGGTGTTC-GTGTAGCTGAGTTAGAAAGGTTTCAT-AGAAA-TATACTCGATAAGGC 512
Query 561 GATGAAGAAGGAGAGCGTGGATATCTGTGTGGAGGCGTTGA-AGCTCAGT-AACAACAGC 618
||| || || | ||| | | ||| ||| || || || | ||| || ||||||| |
Sbjct 513 GATTAAAAAACAAAGCCTTAAGATCGGTGAAGAAGCAAGGATA-CTC-GTTAACAACACC 570
Query 619 ATCTGCAAGATGATCATGGGGAGGAGTTGTTCAG-AG-GAG-AATGGTGAGG-CAGAGAG 674
|| | || |||| | | || || |||| ||||| || || |||| || || || | |
Sbjct 571 CTCGGAAAAATGAGCCTTGGAAGTAGTTTTTCAGTAGAGAACAATGATG-GGACA-A-A- 626
Query 675 AGTT--AGGGCTTTGGCTACCCAGTTAGATGGCTTGACGAAGAA-GATCTTAT-TGGCG- 729
|||| || ||| ||| | |||||| || ||| | | || | | || | ||||
Sbjct 627 AGTTTCAGAATTTT--CTATCAAGTTAGCTGATTTGTCTCA-AATGTT-TTGTGTGGCAC 682
Query 730 AACATGTTGCGTGCGGGGTTTAAA-AAGCTTGTTG-TCTCACTGTTTAGA-AAGGAAATG 786
|| || || | | | | | | | ||| | | | |||| || |||| | ||| | ||
Sbjct 683 AA-ATATTTCATAAGCCGCT-AGAGAAGGTGGG-GATCTCTCT-TTTAAAGAAGCAGATT 738
Query 787 ATGGATGTTTC-CAGCAGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAAC-ATGAAG 844
||||||||||| || | |||||| ||| |||| |||| || |||||| || | || |
Sbjct 739 ATGGATGTTTCACATAA-ATTTGAGGAGTTGCTAGAAAATATTCTTGTG-AAGTACGAGG 796
Query 845 -ATAAACTGGACATGCATCATCAAGGTACAGACTT-AGTGGACGCGTTGTTGGCAGCTTG 902
| ||| || || | | |||||| |||| || || | |||| || || ||||||||||
Sbjct 797 GAAAAA-TGAAC--G-ACCATCAAAGTACTGAATTCA-TGGATGCATTATTGGCAGCTTA 851
Query 903 TCGGGACAAAAATGCAGAGTATAAGATCTCTAGGAACCATATCAAGTCGTTTTTCGCGGA 962
|| ||| |||| ||||||||||||||| ||||||||||||||||| | || || |||||
Sbjct 852 TCAAGACGAAAACGCAGAGTATAAGATCACTAGGAACCATATCAAGGCATTATTAGCGGA 911
Query 963 TCTCTTATTTGCAAGCAC--TGACACCT-TTGTGCAAACAACAC-AGTGGACAGTGGCG- 1017
|| || |||| | || | ||| ||| || | ||| |||||| | ||| || ||| |
Sbjct 912 GCTATTCTTTGGA-GC-CGGTGAGTCCTCTTCTTCAA-CAACACGA-TGGGCAATGG-GA 966
Query 1018 GAGATCATT-AATAACCCTAATGTTCTT-GAGAGATTGAGAGGAGAAATCGATTCCGTGG 1075
|| ||| || || |||||||| | |||| ||||||||||||| |||||| |||| ||||
Sbjct 967 GAAATC-TTCAACAACCCTAA-GATCTTTGAGAGATTGAGAGAAGAAATAGATTTAGTGG 1024
Query 1076 TCGGGAAAG-CAAGGTTGATTCAAGAAACTGATTTGCCAAACCTCCCTTATTTGCAAGCG 1134
| |||||| |||||||||||||||||| |||| | ||||| || || || ||||||||
Sbjct 1025 T-GGGAAATACAAGGTTGATTCAAGAAAGTGATCTACCAAAACTTCCATACTTGCAAGCA 1083
Query 1135 GTGGTCAAGGAAGGGCTAAGACTGCATCCGCCGGG-GCCTCTCTTTGC-AAG-G--TTCT 1189
|| ||||| ||| |||||| |||| ||| ||| || |||| || ||| | || |
Sbjct 1084 GTCGTCAAAGAATCTCTAAGATTGCACCCGGTGGGAGCGG-TCTT-GCCAAGAGAATT-T 1140
Query 1190 CC-CAAGAAGGGTGTAGGATCGGAGGGTTCTATGTACCGGAGAAAACAACA-TTAATGAT 1247
| ||||| |||| || |||||||||||| ||| ||| |||| || || | ||
Sbjct 1141 ACACAAGAT---TGTAACATTGGAGGGTTCTATATACATGAGGGAACATCACTTG-TCAT 1196
Query 1248 TAATGCTTATGCTGTGATGAGAGATTCTGAT-TCTTGGGAAGATCCTGATGAGTTTAAAC 1306
||||||||| || | ||||||||| ||||| | ||||||||||||| ||||||||||||
Sbjct 1197 CAATGCTTATTCTATAATGAGAGATCCTGATAT-TTGGGAAGATCCTAATGAGTTTAAAC 1255
Query 1307 CAGAGAGGTTTCTAGCTTCGTCAAGATCAG-AGCAGGAA-AAGGAGAGAAGAGAGCAAGC 1364
|||||||||||||| || | |||||||||| | || || ||| ||| || ||||||| |
Sbjct 1256 CAGAGAGGTTTCTAACTACTTCAAGATCAGGA-CAAGAGGAAG-AGAAAAAAGAGCAAAC 1313
Query 1365 AATTAAGTACATTGCTTTCGGAAGCGG-ACGAAGAAGCTGTCCTGGAGAAAATCTAGCAT 1423
| | |||| | | |||| || |||| | | ||| | ||||||||| |||||| | |
Sbjct 1314 ACTAAAGTTCCTCCCTTTTGGC-GCGGGAAGGAGAGGATGTCCTGGATTAAATCTTGGTT 1372
Query 1424 ATATCTTTTTAGGAACTGCAATTGGAGTGATGGTACAGGGATTTGAGTGG-AGAATCAAA 1482
||| ||| ||| ||| |||||||||||||||| || | ||||| ||| ||| || ||
Sbjct 1373 ATACCTTAGTAGAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAGA-TCGAA 1431
Query 1483 GAAGAGAAAGTTAACATGGAAGA-GGCTAATG-T-AGGACTGAGCTTG-ACCATGGCTTA 1538
| ||| ||||| ||||||||||| || | | | | | || | |||| | ||||| |
Sbjct 1432 GGAGATAAAGTCAACATGGAAGAAGGTTCAGGATTAAGATTTTTCTTGGATT-TGGCTCA 1490
Query 1539 TCCTCTTAAG-GTCACTCCTGTTCCTCGAA 1567
||| |||||| | |||||||||| ||||||
Sbjct 1491 TCCCCTTAAGTG-CACTCCTGTTGCTCGAA 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5