BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20090.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946792 jgi|Araly1|946792|scaffold_703021.1 1208 0.0
Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1 778 0.0
Ahg930044 jgi|Araly1|930044|scaffold_302501.1 640 0.0
Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1 566 2e-160
Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1 431 9e-120
Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1 353 2e-96
> Ahg946792 jgi|Araly1|946792|scaffold_703021.1
Length=1318
Score = 1208 bits (654), Expect = 0.0
Identities = 1090/1301 (84%), Gaps = 27/1301 (2%)
Strand=Plus/Plus
Query 341 TTGTCTCATCTGCTTC-AGTGGCATATGAGATCTTTAAGGCCCACGATGTGAACGTCT-C 398
|||| || ||||| || | |||| || |||||||| |||||||| || |||||||||| |
Sbjct 4 TTGTTTCCTCTGCCTCTA-TGGCCTACGAGATCTTCAAGGCCCATGACGTGAACGTCTCC 62
Query 399 ATCTCGTGGTGCTGCTGCGATCGATGAGTCCCTCTTGTTTGGATCTTCTAGCTTCATT-T 457
| |||| ||| || |||| | |||||||| ||| ||||||| ||||| || || ||
Sbjct 63 A-CTCGCGGTATTGTTGCGCTTGATGAGTCTCTCATGTTTGGGGCTTCTGGCATC-TTGA 120
Query 458 ACGCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGATCTTCGCCACTAAGCTGCTCC 517
|||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||
Sbjct 121 ACGCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCATGGCCACTAAGCTACTCC 180
Query 518 GACCACAGGTGCTGGAGAATTCACGTGGTGTTCGTGCTGAAGAGTTAAAGCGGTTTTACA 577
|||| || ||||||||| ||||| ||| |||||| |||||| || ||||||||||||
Sbjct 181 GACCGCAAGTGCTGGAGCGGTCACGAGGTATTCGTGTTGAAGAACTACAGCGGTTTTACA 240
Query 578 GGAGAATTCTCGATAAGGCGAGGAAGAATGAGAACATCGAGATCAGTAAGGAATCGGCGA 637
|||| |||||||||||||| | ||||||||||| | | ||||| |||| ||| | ||
Sbjct 241 GGAGCATTCTCGATAAGGCCACGAAGAATGAGAGCGTTGAGATTGGTAAAGAAGCAATGA 300
Query 638 TGCTCATGAACAACATCTTATGCAGGATGAGCATGGGAAGGAGTTTTTCAGAGGAAAATG 697
|||||||||||||| ||| || | |||| |||||||||||||||||||||||| || |
Sbjct 301 AGCTCATGAACAACACCTTGTGTAAAATGATCATGGGAAGGAGTTTTTCAGAGGACAACG 360
Query 698 GTGAGGCAGAGAGAGTCAGGGGCCTGGTGGGTGAATCATATGCCTTGGTGA-AGAAGATT 756
|||| || | |||||||||||| |||| | |||| | |||| ||| || | |||||||
Sbjct 361 GTGAATCAAATAGAGTCAGGGGCTTGGTTGATGAAACGTATG-CTTTGTCAGAGAAGATA 419
Query 757 TTCTTCGCAGCTACATTGCGCAGA-CTGCTTGAGAAGCTTCGGATCCCACTATTCAGGAA 815
||||| ||||||| |||||||||| || |||| ||||||||||||| ||||||||| |||
Sbjct 420 TTCTTGGCAGCTATATTGCGCAGACCT-CTTGCGAAGCTTCGGATCTCACTATTCAAGAA 478
Query 816 GGAGATAATGGGTGTGTCCGACAGATTTGATGAGCTGCTAGAGAGGATTATTGTGGAACA 875
||||||||||||| ||| ||| ||| |||||||||||||||| |||| || ||||||
Sbjct 479 ACAGATAATGGGTGTTTCCAACAAATTCGATGAGCTGCTAGAGAAGATTCTTCAGGAACA 538
Query 876 CAAAGACAAACTTG-A-A-AAGGAGCATCAAGTTATGGATATGATGGATGTGTTGTTGGC 932
|||||| ||||| | | | ||| | ||| ||| ||||||||||||||| |||||||||||
Sbjct 539 CAAAGAGAAACTGGAAGAGAAGAATCATGAAGGTATGGATATGATGGACGTGTTGTTGGC 598
Query 933 AGCTTATCGAGACAAAAACGCAGAGTATAAGATCACTA-GGAATCATATCAAGTCGTTTT 991
||||||| |||| ||||||| |||||||||||||| | |||| ||||||||| | ||||
Sbjct 599 AGCTTATGGAGATGAAAACGCTGAGTATAAGATCAC-ATGGAAGCATATCAAGGCATTTT 657
Query 992 TTGTGGACCTTTTCGTTGGGGGCACTGATACCTCGGTCCAAACAACACAATGGACTATGG 1051
| ||||| ||||| |||| |||||||||||||| || ||||||||||| ||| | ||||
Sbjct 658 TCGTGGAGTTTTTCATTGGAGGCACTGATACCTCAGTGCAAACAACACAGTGGGCAATGG 717
Query 1052 CTGAGATCATTAATAACCCTAACATTCTTCAGACACTGAGAAAAGAAATCGAT-TCAGTT 1110
| ||||| || || || ||| ||||| | | ||||||| ||||||||| | || |||
Sbjct 718 CCGAGATGATCAACAATTCTAGTGTTCTTGATAGACTGAGAGAAGAAATCG-TCTCCGTT 776
Query 1111 GTA-GGGAAATCAAGGTTGATTCACGAAACGGATATACCAAACCTTCCTTATTTGCAAGC 1169
||| |||||| |||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct 777 GTAGGGGAAA-CAAGGTTGATCCAAGAAACAGATTTACCAAACCTTCCTTATTTGCAAGC 835
Query 1170 AGTGGTTAAGGAAGGACTAAGATTGCATCCTCCAGGGCCCCTCTTGATAAGGACTTTTCA 1229
|||||||||||||| ||||||||||| || ||| || |||| ||| ||| || ||
Sbjct 836 AGTGGTTAAGGAAGTTCTAAGATTGCACCCACCATCACCGGTCTTAATACGGAAGTTCCA 895
Query 1230 AGAAAGATGTGA-GATGAAAGGGTTCTACATACCGGAGAAGACAACACTCGTTATCAACG 1288
||||| |||||| | | ||||| || | |||||||||||||||||||||| || | || |
Sbjct 896 AGAAAAATGTGAAG-TCAAAGGATTTTGCATACCGGAGAAGACAACACTCATTGTTAATG 954
Query 1289 CTTATGCTGTGATGAGAGATCCCGACTCTTGGGAAGATCCTGACGAGTTTAAGCCAGAGA 1348
|||||||||||||||||||| || ||||||||||||||||| | |||||||||||||
Sbjct 955 CTTATGCTGTGATGAGAGATTATGATTCTTGGGAAGATCCTGAAAAATTTAAGCCAGAGA 1014
Query 1349 GGTTTCTAAGTTATTCAAGATCAGGGCAAGAAGACGAGAAAGAGCAA-ACACTTAAGTAC 1407
||||| |||||| |||||||||||||||||| ||||||||||||||| | ||||| ||||
Sbjct 1015 GGTTTTTAAGTTTTTCAAGATCAGGGCAAGAGGACGAGAAAGAGCAAGA-ACTTAGGTAC 1073
Query 1408 CTTTCTTTTGGTGGCGGAAGGAGAGGATGTCCTGGAGTAAATCTAGGTTATATATTTGTT 1467
||| ||||||| |||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 1074 CTTCCTTTTGGCAGCGGAAGGAGAGGATGTCCTGGAGCAAATCTTGGTTCTATATTTGTA 1133
Query 1468 GGAACTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAAAATCGAAGGAGATAAGGTC 1527
||||| ||| ||||| ||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1134 GGAACCGCAGTAGGAGTGATGGTGCAGTGCTTTGATTGGAAAATCAAAGAAGATAAGGTC 1193
Query 1528 AACATGGAAGAGACTTATGGAGGAATGAACCT-AACCATGGTTAACCCGCTTAAGTGCAC 1586
|||||||||||||||| || |||||||| ||| || |||||| |||| |||| ||||||
Sbjct 1194 AACATGGAAGAGACTTTTGAAGGAATGACCCTGAAA-ATGGTTCACCCCCTTATGTGCAC 1252
Query 1587 TCCAGTTCCTC-GAACCCAACCTTTTTCTTTTACTTCTAAT 1626
|||||||| | |||| |||||||||||||||| |||||||
Sbjct 1253 TCCAGTTC-TAAGAACTCAACCTTTTTCTTTTATTTCTAAT 1292
> Ahg479531 jgi|Araly1|479531|fgenesh2_kg.3__2232__AT3G20080.1
Length=1688
Score = 778 bits (421), Expect = 0.0
Identities = 1123/1452 (77%), Gaps = 87/1452 (6%)
Strand=Plus/Plus
Query 195 TGATCTGCCTCCGAGCCCTCCGTCTCTTCCTATCATTGGTCATCTTCACCATCTCCTCTC 254
|||| | ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||
Sbjct 139 TGATTTACCTCCGAGCCCTCCGTCTCTTCCGATCATCGGTCATCTTCACCTTCTTCTCTC 198
Query 255 T-TCTCTAACT-CACAAG-TCTTTACAAAAACTCTCC-TCCAAGTATGGACCT-TTCCTC 309
| | ||||| | ||| || ||||||| ||||||||| | |||||| ||| || || |||
Sbjct 199 TGT-TCTAA-TCCAC-AGATCTTTACTGAAACTCTCCAT-CAAGTACGGATCTATT-CTC 253
Query 310 CATCTCCGGATCTTTAGTGTTCCCAT-CA-TCCTTGTCTCATCTGCTTCAGTGGCATATG 367
|||| ||| ||||||| ||||| | | ||| |||| || || ||| | || ||||
Sbjct 254 TATCTTCGGGTCTTTAG-ATTCCC-TGTAGCCCTCATCTCCTCAGCATCAATTGCTTATG 311
Query 368 AGATCTTTAAGGCCCACGATGTGAACGTCTCATCTCGTGG-TGCTGCTGCGATCGATGAG 426
||||||| | || ||||| || ||| |||| |||||||| | | || ||| ||||||
Sbjct 312 AGATCTTCAGGGAACACGACGTTAACATCTCGTCTCGTGGTTTC-CCTTCGACCGATGAT 370
Query 427 TCCC-TCTTGTTTGGATC-TTCTAGCTTCATTTAC-GCTCCCTATGGAGATTACTGGAAG 483
|||| | ||| ||||| ||| ||||||| | | ||||||||||||||||||||||||
Sbjct 371 TCCCTTTTTG-CCGGATCTTTC-AGCTTCACAT-CTGCTCCCTATGGAGATTACTGGAAG 427
Query 484 TTCATGAAGAAGATCTTCGCCACTAAGCT-GCTCCGA-CCACAGGTGCTGGAGAATTCAC 541
|||||||||||| || | | || || || ||| || || |||| || ||| ||||
Sbjct 428 TTCATGAAGAAGCTCCTGGTTACGAA-CTTGCTTGGAGCC-CAGGCACTCGAGCGGTCAC 485
Query 542 GTGGTGTTCGTGCTGAAGAGTTAAAGCGGTTTTACAGGAGAAT-TCTCG-ATAAGGCGAG 599
| | || ||||| || ||| || | |||||||||| |||| | | | |||| ||||
Sbjct 486 GAAGAGTCCGTGCAGATGAGCTAGATCGGTTTTACA--AGAACCTGTTGGATAAAGCGAT 543
Query 600 GAAGAATGAGAACATCGAGATCA-GTAAGGAATCGGCGATGCTCA-TGAACAACATCTTA 657
||| || |||| | | ||||| | || |||| || || ||||| | ||||||||| |
Sbjct 544 GAATAAAGAGAGCGTGGAGAT-ATGTGCGGAAGCGTTGAAGCTCAGT-AACAACATCATC 601
Query 658 TGCAGGATGAGCAT-GGGAAGGAGTTTTTCAGAGGAAAATGGTGAGGCAGAGAGAGTCAG 716
|||| | ||| ||| |||| |||||| ||||||||| ||||||||||| |||| ||||||
Sbjct 602 TGCAAGTTGATCATAGGGA-GGAGTTGTTCAGAGGAGAATGGTGAGGCGGAGAAAGTCAG 660
Query 717 GGGCCT-GG-TGGGTGAATCATATGCCTTGGTGAAGAAGATTTTCTTCGCAGCTACAT-T 773
|| | | || | || | | ||| |||| ||||||||| || || ||| |||| |
Sbjct 661 GG-CTTTGGCTACC-GAGTTAGATGGCTTGACGAAGAAGATCTTATTGGCAA--ACATGT 716
Query 774 -GCG-C-AGACTGCTTGAGAAGCTTCG--GATCCCACTATTCAGGAAGGAGATAATGGGT 828
||| | || | || | |||||| | | || |||| || || ||||| || |||| |
Sbjct 717 TGCGACCAGGGT--TTAAAAAGCTT-GTTG-TCTCACTGTTTAGAAAGGAAATGATGGAT 772
Query 829 GTGTCC-GACAGATTTGATGAGCTGCTAGAGAGGATTATTGTGGAACACAAAGACAAACT 887
|| ||| | ||||||||||||||||| || ||||| |||||||||| |||| |||||
Sbjct 773 GTTTCCAGG-AGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAACATGAAGATAAACT 831
Query 888 TGAAAAGG-AGCATCAAGTTATGGA-TATGATGGATGTGTTGTTGGCAGCTTATCGAGAC 945
|| | || | ||||||| || || | | ||||| | |||||||||||||||||| |||
Sbjct 832 GGACA-GGCATCATCAAGGTACAGACT-TAATGGACGCGTTGTTGGCAGCTTATCGGGAC 889
Query 946 AAAAACGCAGAGTATAAGATCACTAGGAATCATATCAAGTCGTTTTTTGTGGACCTTTTC 1005
||||| ||||||||||||||| ||||||| ||||||||||||||||| | ||| || ||
Sbjct 890 AAAAATGCAGAGTATAAGATCTCTAGGAACCATATCAAGTCGTTTTTCGCGGATCTCTTA 949
Query 1006 GTTGGGGGCACTGATACCTCGGTCCAAACAACACAATGGACTATGGCTGAGATCATTAAT 1065
||| ||||| || |||| ||| ||||||||||| ||| | ||||| |||||||| ||
Sbjct 950 TTTGCAGGCACCGACACCTTGGTGCAAACAACACAGTGGGCAATGGCGGAGATCATGAAC 1009
Query 1066 AACCCTAACA-TTCTTCAGACACTGAGAAAAGAAATCGATTCAGTTGTAGGGAAATCAA- 1123
|||||||| | ||||| ||| | ||||| |||||| ||||| || ||||| ||| ||
Sbjct 1010 AACCCTAA-AGTTCTTGAGAGATTGAGAGGAGAAATTGATTCCGTGGTAGG-AAAGAAAA 1067
Query 1124 GGTTGATTCACGAAACGGATATACCAAACCTTCCTTATTTGCAAGCAGTGGTTAAGGAAG 1183
|||| ||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1068 GGTTAATTCAAGAAACTGATTTACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAG 1127
Query 1184 GACTAAGATTGCATCCTCCAGGGCCC-CTCTT-GATAAGGACTTTTC--AAGAAAGATGT 1239
|||||||| |||| ||||| ||| || ||||| | |||| || || ||||| | |||
Sbjct 1128 GACTAAGACTGCACCCTCC-GGGTCCTCTCTTTGG-AAGG--TTCTCCCAAGAAGGGTGT 1183
Query 1240 GAG-AT-GAAAGGGTTCTACATACC-GGAGAAGACAACACTCGTTATCAACGCTTATGCT 1296
|| || | | ||||| || |||| ||| || |||| ||| | | || |||||||||
Sbjct 1184 -AGGATTGGA-GGGTTTTATGTACCAGGAAAA-ACAATACTTATGGTTAATGCTTATGCT 1240
Query 1297 GTGATGAGAGATCCCGACTCTTGGGAAGATCCTGACGAGTTTAAGCCAGAGAGGTTTCTA 1356
|||||||||||| | || |||||||||| |||||| || |||||||||||||||||||||
Sbjct 1241 GTGATGAGAGATTCTGATTCTTGGGAAGTTCCTGATGATTTTAAGCCAGAGAGGTTTCTA 1300
Query 1357 -AGTTATTCAAGATCAGGGCAAGAAGACGA--GAA-AGAGCAAAC-ACTTAAGTACCTTT 1411
| || |||||||||| ||| ||| | || ||| ||||||| | | |||||||| ||
Sbjct 1301 GA-TTCGTCAAGATCAGAGCAGGAAAAGGATAGAAGAGAGCAAGCGA-TTAAGTACATTG 1358
Query 1412 CTTTTGGTGGCGGAAGGAGAGGATGTCCTGGAGTAAATCTAGGTTATATATTTGTTGGAA 1471
|||| || | ||||| ||| | |||||||||| |||||||| ||||| ||| | ||||
Sbjct 1359 CTTTCGGAAGTGGAAGAAGAAGCTGTCCTGGAGAAAATCTAGCATATATCTTTATAGGAA 1418
Query 1472 CTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAAAATCGAAGGAGATAAGGTCAACA 1531
||||||| ||| ||||||| ||| | ||||| |||| |||| ||| ||| || | ||||
Sbjct 1419 CTGCAATTGGAGTGATGGTACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAATTAACA 1478
Query 1532 TGGAAGAGACT-TATGGAGGAATGAACCTAACCATGGTTAACCCGCTTAAG-TGCACTCC 1589
|||||||||| | || |||| ||| | | ||||||| | | || |||||| | ||||||
Sbjct 1479 TGGAAGAGACAGT-TGTAGGACTGAGCTTGACCATGGCTCATCCTCTTAAGAT-CACTCC 1536
Query 1590 AGTTCCTCGAAC 1601
||| |||||||
Sbjct 1537 TGTTGCTCGAAC 1548
> Ahg930044 jgi|Araly1|930044|scaffold_302501.1
Length=944
Score = 640 bits (346), Expect = 0.0
Identities = 544/640 (85%), Gaps = 11/640 (2%)
Strand=Plus/Plus
Query 994 GTGGACCTTTTCGTTGGG-GGCACTGATACCTCGGTCCAAACAACACAATGGACTATGGC 1052
||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 301 GTGGAGCTTTTCG-TGGGAGGCACTGATACCTCGGTGCAAACAACACAATGGACAATGGC 359
Query 1053 TGAGATCATTAATAACCCTAACATTCTTCAGACACTGAGAAAAGAAATCGATTCAGTTGT 1112
|||||||||||||| ||| || ||||| || |||||| ||||||||||||| | |||
Sbjct 360 CGAGATCATTAATAAGCCTGACGTTCTTGTGAGGCTGAGAGAAGAAATCGATTCCGCTGT 419
Query 1113 AGGGAAATCAAGGTTGATTCACGAAACGGATATACCAAACCTTCCTTATTTGCAAGCAGT 1172
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 420 AGGGACATCAAGGTTGATTCAAGAAACAGATATACCAAACCTTCCTTATTTGCAAGCGGT 479
Query 1173 GGTTAAGGAAGGACTAAGATTGCATCCTCCAGGGCCCCTCTTGATAAGGACTTTTCAAGA 1232
|||||||||||||||||||||||| || ||| || ||| ||| |||| ||| ||||
Sbjct 480 GGTTAAGGAAGGACTAAGATTGCACCCACCATTTCCTCTCCTGACGAGGAAGTTTGAAGA 539
Query 1233 AAGATGTGAGATGAAAGGGTTCTACATACCGGAGAAGACAACACTCGTTATCAACGCTTA 1292
||| |||||||| |||||||||||||| |||||||||||| || ||||| || |||||
Sbjct 540 AAGGTGTGAGATCAAAGGGTTCTACATTCCGGAGAAGACATTTCTTGTTATTAATGCTTA 599
Query 1293 TGC-TGTGATGAGAGATCCCGACTCTTGGGAAGATCCTGACGAGTTTAAGCCAGAGAGGT 1351
||| || |||||||||||| || || |||||||||||| | ||||||||||| |||||||
Sbjct 600 TGCTTG-GATGAGAGATCCTGATTCCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGT 658
Query 1352 TTCTAAGTTATTCAAGATCAGGGCAAGAAGACGAGAAAGAGCAAACACTTAAGTACCTTT 1411
||||| ||| |||||||| ||| ||||||||||||| ||| || | | |||||| ||
Sbjct 659 TTCTAGGTTCTTCAAGATTAGGACAAGAAGACGAGAGGGAGGAAGCTCAGAAGTACATTC 718
Query 1412 CTTTTGGTGGCGGAAGGAGAGGATGTCCTGGAGT-AAATCTAGGTTATATATTT-GTTGG 1469
|||| || |||||||||||||| ||||||||| | ||||||| || ||| ||| | ||
Sbjct 719 CTTTCGGCGGCGGAAGGAGAGGCTGTCCTGGA-TCTAATCTAGCTTCTAT-TTTCATAGG 776
Query 1470 AACTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAAAATCGAAGGAGATAAGGTCAA 1529
||| || || ||| ||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 777 AACCGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGGTCAA 836
Query 1530 CATGGAAGAGACTTATGGAGGAATGAACCTAACCATGGTTAACCCGCTTAAGTGCACTCC 1589
||||||||||||| || |||| ||| ||| ||||||||| | || ||||||||||||||
Sbjct 837 TATGGAAGAGACTTTTGAAGGACTGACCCTTACCATGGTTCATCCACTTAAGTGCACTCC 896
Query 1590 AGTTCCTCGAACCCAACCTTTTTCTTTTA-CTTCTAATCT 1628
||||||||||||||||| ||| | ||||| ||| || |||
Sbjct 897 AGTTCCTCGAACCCAAC-TTTCT-TTTTAACTTGTATTCT 934
> Ahg473062 jgi|Araly1|473062|fgenesh2_kg.1__3016__AT1G28430.1
Length=1562
Score = 566 bits (306), Expect = 2e-160
Identities = 1045/1391 (75%), Gaps = 94/1391 (7%)
Strand=Plus/Plus
Query 195 TGATCTGCCTCCGAGCCCTCCGTCTCTTCCTATCATTGGTCATCTTCACCATCTCCTCTC 254
|||| ||||||| |||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct 111 TGATTTGCCTCCAAGCCCTCCTTCTCTTCCCATCATTGGTCATCTTCACCTTCTCCTCT- 169
Query 255 TT-C-TCTAACT-CACAAGTCTTTACAAAAACTCTCCTCCAAGTATGGACCTTTCCTCCA 311
|| | || || | ||||||| ||| |||||| |||| ||||| || |||||||| |||||
Sbjct 170 TTGCTTC-AA-TCCACAAGTGTTTTCAAAAAATCTCATCCAAATACGGACCTTTTCTCCA 227
Query 312 TCTCCGGATCTTT--AGTGTTCCCATCATCCTTGTCTCATCTGCTTCAGTGGCATATGAG 369
||| || || ||| | ||| ||||| || ||||| || ||||| |||| ||| || ||
Sbjct 228 TCTTCGCAT-TTTCCA-TGTCCCCATTATTCTTGTGTCCTCTGCCTCAGCGGCTTACGAT 285
Query 370 ATCTTTAAGGCCCACGATGTGAACGTCTCATCTCGTGGTGCTGCTGCGATCGATGAGTCC 429
||||| ||||| |||||| | || ||||| | ||| |||| || ||| |||||||| | |
Sbjct 286 ATCTTCAAGGCACACGATATTAAAGTCTCTTATCGAGGTGATGTTGCAATCGATGAATGC 345
Query 430 CTCT-TGTTTGGATCTTCTAGCTTCATTT-A-CGCTCCCTATGGAGATTACTGGAAGTTC 486
| | ||||||| |||||| | | |||| | ||||| | || |||||||||||| |||
Sbjct 346 AT-TGTGTTTGGTTCTTCT-GGAT-ATTTCAGAGCTCCATCTGAAGATTACTGGAAATTC 402
Query 487 ATGAAGAAGATCTTCGCCACTA-AGCTGCTCCGACCACAGGTGCTGGAGAATTCACGTGG 545
|||| |||| || || ||| || ||| |||| || | ||| ||| |||||||
Sbjct 403 ATGAGGAAGCTCATCATGGCTAGGGC-GCTTGGACCCCAAGCGCTAGAGCGGACACGTGG 461
Query 546 TGTTCGTGCT-GAAGAGTTA-AAGCGGTTTTACAGGAGAAT-T-CTCGATAAGGCGAGGA 601
|||||||| | | |||||| || ||||| | | || ||| | ||||||||||||| |
Sbjct 462 TGTTCGTG-TAGCTGAGTTAGAA-AGGTTTCATA-GA-AATATACTCGATAAGGCGATTA 517
Query 602 AGAATGAGAA-CATCGAGATCAGT-AAGGAATC-GGCGATGCTCATGAACAACATCTTAT 658
| || | || | | ||||| || || ||| | | ||| ||| | ||||||| | |
Sbjct 518 AAAAACA-AAGCCTTAAGATCGGTGAA-GAAGCAAG-GATACTCGTTAACAACACCCTCG 574
Query 659 GCAGGATGAGCATGGGAAGGAGTTTTTCAG-AG-GAA-AATGGTGAGG-CAGAGAGAGTC 714
| | |||||| | ||||| |||||||||| || ||| |||| || || || | || ||
Sbjct 575 GAAAAATGAGCCTTGGAAGTAGTTTTTCAGTAGAGAACAATGATG-GGACA-AAAGTTTC 632
Query 715 AGGGGCCTGGTGGGTGAA-TCATATGCCTTG-GTGAAGAAGATTTTCT-TCGCAGC-TAC 770
| | | | | || | | || ||| | || | | |||| | | ||| | |
Sbjct 633 A---GAATTTTCTATCAAGTTAGCTGATTTGTCTCAA-ATG-TTTTGTGTGGCA-CAAAT 686
Query 771 ATTGC-GCAGACTGCTTGAGAAGCTTCGGATCCCACTATTCAGGAAGGAGATAATGGGTG 829
||| | || | ||| |||||| | ||||| | || || | |||| |||| |||| ||
Sbjct 687 ATTTCATAAG-CCGCTAGAGAAGGTGGGGATCTCTCTTTTAAAGAAGCAGATTATGGATG 745
Query 830 TGTC-CGACAGATTTGATGAGCTGCTAGAGAGGATTATTGTGGAA-CACAAAGACAAACT 887
| || | | | |||||| ||| ||||||| | ||| |||| ||| || || |||
Sbjct 746 TTTCAC-ATAAATTTGAGGAGTTGCTAGAAAATATTCTTGT-GAAGTAC-GAGGGAAAAA 802
Query 888 TGAAAAGGAGCATC-AAGTTA-TGGATATGATGGATGTGTTGTTGGCAGCTTATCGAGAC 945
|| || || |||| ||| || || || | ||||||| || ||||||||||||| ||||
Sbjct 803 TG--AACGACCATCAAAG-TACTGAAT-TCATGGATGCATTATTGGCAGCTTATCAAGAC 858
Query 946 AAAAACGCAGAGTATAAGATCACTAGGAATCATATCAAGTCGTTTTTTGTGGACCTTTTC 1005
|||||||||||||||||||||||||||| ||||||||| | || || | ||| || |||
Sbjct 859 GAAAACGCAGAGTATAAGATCACTAGGAACCATATCAAGGCATTATTAGCGGAGCTATTC 918
Query 1006 GTTGGGGGCACTGA-TACCTCGGTC--CAAACAACACAATGGACTATGGCTGAGATCATT 1062
|||| | | ||| | |||| || ||| |||||| |||| | |||| || ||| ||
Sbjct 919 TTTGGAGCCGGTGAGT-CCTCT-TCTTCAA-CAACACGATGGGCAATGGGAGAAATC-TT 974
Query 1063 -AATAACCCTAACATTCTTC-AGACACTGAGAAAAGAAATCGATTCAGTTGTAGGGAAAT 1120
|| |||||||| || ||| ||| | ||||| ||||||| |||| ||| || |||||||
Sbjct 975 CAACAACCCTAAGAT-CTTTGAGAGATTGAGAGAAGAAATAGATTTAGTGGT-GGGAAAT 1032
Query 1121 -CAAGGTTGATTCACGAAACG-GATATACCAAACCTTCCTTATTTGCAAGCAGTGGTTAA 1178
||||||||||||| |||| | ||| ||||||| ||||| || ||||||||||| || ||
Sbjct 1033 ACAAGGTTGATTCAAGAAA-GTGATCTACCAAAACTTCCATACTTGCAAGCAGTCGTCAA 1091
Query 1179 GGAAGGACTAAGATTGCATCCTCCAGG-GCCCCTCTTGATAAG-GACTTTTCAAGAAAGA 1236
||| ||||||||||| || || || ||||| ||| || ||| || || ||
Sbjct 1092 AGAATCTCTAAGATTGCACCCGGTGGGAGCGG-TCTTGCCAAGAGAATTTACAC-AA-GA 1148
Query 1237 T-GTGAGAT-GAAAGGGTTCTACATACCGGAGAAGA-CAACACTCGTTATCAACGCTTAT 1293
| || | || | | |||||||| |||| ||| || || |||| || ||||| ||||||
Sbjct 1149 TTGTAACATTGGA-GGGTTCTATATACATGAGG-GAACATCACTTGTCATCAATGCTTAT 1206
Query 1294 GCTGTGATGAGAGATCCCGACTCTT-GGGAAGATCCTGACGAGTTTAAGCCAGAGAGGTT 1352
|| | ||||||||||| || | || ||||||||||| | |||||||| |||||||||||
Sbjct 1207 TCTATAATGAGAGATCCTGA-TATTTGGGAAGATCCTAATGAGTTTAAACCAGAGAGGTT 1265
Query 1353 TCTAAGTTA-TTCAAGATCAGGGCAAGAAGACGAGAAA---GAGCAAACACTTAAGTACC 1408
||||| | | |||||||||||| ||||| || |||||| ||||||||||| |||| ||
Sbjct 1266 TCTAACT-ACTTCAAGATCAGGACAAGAGGAAGAGAAAAAAGAGCAAACACTAAAGTTCC 1324
Query 1409 TTTCTTTTGGTGGCGG-AAGGAGAGGATGTCCTGGAGTAAATCTAGGTTATATATTTGTT 1467
| ||||||| | ||| ||||||||||||||||||| ||||||| ||||||| || ||
Sbjct 1325 TCCCTTTTGGCG-CGGGAAGGAGAGGATGTCCTGGATTAAATCTTGGTTATACCTTAGTA 1383
Query 1468 GGAACTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAAAATCGAAGGAGATAAGGTC 1527
| ||| |||| ||| |||||||||| |||||||||||| | |||||||||||||| |||
Sbjct 1384 GAAACCACAATTGGAGTGATGGTGCAATGCTTTGACTGGGAGATCGAAGGAGATAAAGTC 1443
Query 1528 AACATGGAAGA 1538
|||||||||||
Sbjct 1444 AACATGGAAGA 1454
> Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1
Length=1489
Score = 431 bits (233), Expect = 9e-120
Identities = 575/738 (78%), Gaps = 32/738 (4%)
Strand=Plus/Plus
Query 168 GAAACCAAAGGGCACACGAGTTGGCTGTGATCTGCCTCCGAGCCCTCCGTCTCTTCCTAT 227
||||||||||| | ||| || ||| | |||| ||||||| |||||||| ||||| || ||
Sbjct 90 GAAACCAAAGGACTCACAAGGTGGGTTTGATTTGCCTCCAAGCCCTCCTTCTCTGCCAAT 149
Query 228 CATTGGTCATCTTCACCATCTCCTCTCTTCTCTAACTCACAAGTCTTTACAAAAACTCTC 287
||||||||||||||| | |||||||||| ||||||| |||||||| ||||| ||||||||
Sbjct 150 CATTGGTCATCTTCATCTTCTCCTCTCTACTCTAACCCACAAGTCCTTACAGAAACTCTC 209
Query 288 CTCCAAGTATGGACCTTTCCTCCATCTCCGGATCTTTAGTGTTCCC-ATCATCCTTGTCT 346
|||||||||||||||||||||||||||||| ||||| | || |||| | ||| |||| |
Sbjct 210 CTCCAAGTATGGACCTTTCCTCCATCTCCGTATCTTCAATG-TCCCTGTAATCTTTGTTT 268
Query 347 CATCTGCTTCAGTGGCATATGAGATCTTTAAGGCCCACGATGTGAACGTCTCATCTCGTG 406
| || ||||| || ||||| |||||||| | ||| || ||||||||| |||| | ||| |
Sbjct 269 CCTCGGCTTCTGTAGCATACGAGATCTTCAGGGCACATGATGTGAACATCTCTTTTCGCG 328
Query 407 G-TGCTGCTGC-GATCGATGAGTCCCTCTTGTTTGGATCTTCTAGCTTCATTT-A-CGCT 462
| | || | | || | |||||||||||| ||||||||||| |||| ||| | ||||
Sbjct 329 GCAAC-CCTCCTG-TCAAAGAGTCCCTCTTGGTTGGATCTTCTGGCTT--TTTCACCGCT 384
Query 463 CCCTATGG-AGATTACTGGAAGTTCATGAAGAAGATCTTCGCCACTAAGCTGCTCCGACC 521
|| ||||| | |||| |||||||||||||| ||| | | | ||| ||||||||| ||||
Sbjct 385 CCTTATGGCA-ATTATTGGAAGTTCATGAAAAAGCTAATGGTCACGAAGCTGCTCGGACC 443
Query 522 ACAGGTGCTGGAGAATTCACGTGGTGTTCGTGCTGAAGAGTTA-AAGCGGTTTTAC-AGG 579
|||| || || ||||| || | ||||| || ||| || || ||||||||| ||
Sbjct 444 GCAGGCACTCCAGCGGTCACGAGGCATCCGTGCAGATGAGCTAGAA-CGGTTTTACAAGC 502
Query 580 AGAATTCTCGATAAGGCGAGGAAGAATGAGAACATCGAGATCAGTAAGGAATCGGCGATG 639
| |||| |||||||| |||||||| |||| ||| ||||| |||||||| | ||
Sbjct 503 A-CCTTCTTGATAAGGCAAGGAAGAACGAGAGCATTGAGATTGGTAAGGAAGCAATGAAA 561
Query 640 CTCATGAACAACATCTTATGCAGGATGAGCATGGGAAGGAGTTTTTCAGAGGAAAATGGT 699
||||| || |||| | | |||| |||| ||||| ||||||| ||| ||||||||||||
Sbjct 562 CTCATTAATAACAGCATCTGCAAGATGTTTATGGGGAGGAGTTGTTCTGAGGAAAATGGT 621
Query 700 GAGGCAGAGAGAGTCAGGGGCCTGGTGGGTGAATC-ATATGCCTTGGTGAAGAAGAT-TT 757
||||||||||||||||| ||| ||||| ||||| | ||||||| |||||||| ||
Sbjct 622 GAGGCAGAGAGAGTCAGAGGCTTGGTGACCGAATCGAC-TGCCTTGACAAAGAAGATCTT 680
Query 758 TCTTCGCAGCTACAT-T-GCGCAGACTGCTTGAGAAGCTTCGGA-TCCCACTATTCAGGA 814
| | ||| |||| | || ||| | ||| ||||||| |||| | |||| |||| |
Sbjct 681 TATG-GCAA--ACATGTTGCACAGGCACCTTAAGAAGCT-CGGAATATCACTGTTCAAAA 736
Query 815 AGGAGATAATGGGTGTGTCC-GACAGATTTGATGA-GCTGCTAG-AGAGGATTATTGTGG 871
|||||||||||||||| || | |||||| | || | |||| | ||| |||| ||| ||
Sbjct 737 AGGAGATAATGGGTGTTTCTTG-CAGATTCAACGAAG-TGCT-GTAGAAGATTCTTGAGG 793
Query 872 AACACAAAGACAAACTTG 889
|| || |||| |||||||
Sbjct 794 AATACGAAGAGAAACTTG 811
> Ahg480132 jgi|Araly1|480132|fgenesh2_kg.3__2833__AT2G05190.1
Length=288
Score = 353 bits (191), Expect = 2e-96
Identities = 256/287 (89%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 1327 CCTGACGAGTTTAAGCCAGAGAGGTTTCTAAGTTATTCAAGATCAGGGCAAGAAGACGAG 1386
||||||||||||||||| |||||||||||||||| |||||| | ||| |||| || |||
Sbjct 1 CCTGACGAGTTTAAGCCGGAGAGGTTTCTAAGTTCTTCAAG-T--GGGAAAGATGAGGAG 57
Query 1387 AAAGAGCAAACACTTAAGTACCTTTCTTTTGGTGGCGGAAGGAGAGGATGTCCTGGA-GT 1445
||||||||| | ||||||||||| ||||||| ||||| ||| |||||||||||||| ||
Sbjct 58 AAAGAGCAAGCGTTTAAGTACCTTCCTTTTGGCGGCGGTAGGGGAGGATGTCCTGGAGGT 117
Query 1446 AAATCTAGGTTATATATTTGTTGGAACTGCAATAGGAATGATGGTGCAGTGCTTTGACTG 1505
||||||| || ||||||||| | ||| ||||| ||| ||||||||||||||||||||||
Sbjct 118 -AATCTAGCTTCTATATTTGTAGTAACCGCAATTGGAGTGATGGTGCAGTGCTTTGACTG 176
Query 1506 GAAAATCGAAGGAGATAAGGTCAACATGGAAGAGACTTATGGAGGAATGAACCTAACCAT 1565
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 177 GAAAATCAAAGGAGATAAGGTCAACATGGAAGAGACTTATGAAGGAATGAACCTAAGCAT 236
Query 1566 GGTTAACCCGCTTAAGTGCACTCCAGTTCCTCGAACCCAACCTTTTT 1612
|||| | |||||||||||||| ||||||||||||| |||||||||||
Sbjct 237 GGTTCATCCGCTTAAGTGCACACCAGTTCCTCGAAGCCAACCTTTTT 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5