BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20140.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1 1027 0.0
> Ahg479532 jgi|Araly1|479532|fgenesh2_kg.3__2233__AT3G20140.1
Length=1489
Score = 1027 bits (556), Expect = 0.0
Identities = 637/677 (94%), Gaps = 2/677 (0%)
Strand=Plus/Plus
Query 853 GCAGCTTGCCGAGACAAAAATGCAGAGTGTAAAATCACTAGGAACCACATTAAGTCGTTG 912
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 814 GCAGCTTACCGAGACAAAAATGCAGAGTGTAAGATCACTAGGAACCACATTAAGTCGTTG 873
Query 913 TTCGTGGATCTTGTTGTTGCAGGCACCGACACTTCGAGACATGCAACACAGTGGACAATG 972
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 874 TTCGTGGATCTTGTCGTTGCAGGCACCGACACTTCAAGACATGCAACACAGTGGACAATG 933
Query 973 GCAGAGATAATTAACAAGCCTAAGGTTCTTGA-AAAGGTAAGAGAAGAAATTTATTCAGT 1031
||||||||||||||||||||| | ||||||| ||| ||||||||||||| |||| ||
Sbjct 934 GCAGAGATAATTAACAAGCCTGCGATTCTTGATAAA-TTAAGAGAAGAAATCGATTCTGT 992
Query 1032 TGTAGGAAGAACAAGGTTGGTTCAAGAAACAGATTTACCGAGCCTACCTTATTTGCAAGC 1091
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 993 TGTAGGGAGAACAAGGTTGGTTCAAGAAACAGATTTACCAAGCCTACCATATTTGCAAGC 1052
Query 1092 TACTGTCAAGGAAGGACTGAGATTGCACCCTCCCGGGCCTCTCTTTGCAAGGACAGCCCG 1151
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1053 TATTGTTAAGGAAGGACTGAGATTGCACCCTCCCGGGCCTCTCTTTGCAAGGACAGCTCG 1112
Query 1152 AGAAGGGTTTAGTGTCGGAGGATTTTATGTACCAGAGAACACACCACTTGTTGTTAATGC 1211
|||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1113 AGAAGGGTGTAGGGTCGGAGGATTTTATGTACCCCAAAACACACCACTTGTTGTTAATGC 1172
Query 1212 TTATGCTATGATGAGAGATCCTGGTTCTTGGGAAGATCCCAATGAGTTTAAGCCAGAGAG 1271
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 1173 TTATGCTATGATGAGAGATCCTGATACTTGGGAAGAGCCCAATGAGTTTAAGCCAGAGAG 1232
Query 1272 GTTTCTAGGTTCAGGAAAAGAAGACGAGAGAGAGCACGGACTTAAGTACATTCCTTTTGG 1331
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1233 GTTTCTAGGTTCAGGAAAAGAAGAGGAGAGAGAGCATGGACTTAAGTACATTCCTTTTGG 1292
Query 1332 TAGCGGAAGGAGAGGCTGTCCTGGAATAAATCTAGCTTACATTCTTGTTGGAACCGCGAT 1391
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1293 TAGCGGAAGAAGAGGCTGTCCTGGAGTAAATCTAGCTTACATTCTTGTTGGAACGGCGAT 1352
Query 1392 TGGAGTGATGGTACAGTGCTTTGACTGGAAAATCAAAGGAAATAAGGTTAACATGGAAGA 1451
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1353 TGGAGTGATGGTACAGTGCTTTGACTGGAAAATCAAAGGAGATAAAGTTAACATGGAAGA 1412
Query 1452 AGCTCGTGGATCACTGGTATTAACCATGGCTCATCCACTTAAGTGCATTCCGGTTGCTCG 1511
||||||||| ||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 1413 GGCTCGTGGAGCACTGGTCTTGACCATGGCTCATCCCCTTAAGTGCATTCCTGTTGCTCG 1472
Query 1512 AACCCAGATTCCCAGTT 1528
|||||||||||||||||
Sbjct 1473 AACCCAGATTCCCAGTT 1489
Score = 965 bits (522), Expect = 0.0
Identities = 720/816 (88%), Gaps = 12/816 (1%)
Strand=Plus/Plus
Query 4 GCAGCAATGTTGACTGTTGAGTTTCAAAACTGCTTGATCTTTATCCTCCTCTGCATCCTT 63
||||||||| |||||||||| |||||||||| ||| || ||| ||||||||||| | |||
Sbjct 1 GCAGCAATGATGACTGTTGACTTTCAAAACTACTTCATATTTGTCCTCCTCTGC-TTCTT 59
Query 64 TT-ACTCCTATGTTACCCTCTCTTTTTCAAGAAACCAAAGGTCTCACAAGATGGATTTGG 122
|| |||||| | |||||||||||| |||||||||||||||| |||||||| ||| ||||
Sbjct 60 TTCACTCCTCTTTTACCCTCTCTTCTTCAAGAAACCAAAGGACTCACAAGGTGGGTTTGA 119
Query 123 TTTGCCTCCAAGCCCT-CTATCTCTGCCAATCATTGGTCATCTTCACCTGCTTTTCTCTA 181
|||||||||||||||| || |||||||||||||||||||||||||| || || ||||||
Sbjct 120 TTTGCCTCCAAGCCCTCCT-TCTCTGCCAATCATTGGTCATCTTCATCTTCTCCTCTCTA 178
Query 182 ATCTAACTCACAAGTCCTTACAGAAACTCTCCTCCAAGTATGGACCTCTCCTCTATCTCC 241
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 179 CTCTAACCCACAAGTCCTTACAGAAACTCTCCTCCAAGTATGGACCTTTCCTCCATCTCC 238
Query 242 GCATCTTCAATGTCCC-GATAATCTTTGTTTCCTCGGCCTCAGTGGCATATGAGATCTTC 300
| |||||||||||||| | ||||||||||||||||||| || || ||||| |||||||||
Sbjct 239 GTATCTTCAATGTCCCTG-TAATCTTTGTTTCCTCGGCTTCTGTAGCATACGAGATCTTC 297
Query 301 AGGGGACATGATGTGAACATCTCTTTTCGAGGGAACCCTCCTATCGAGGAGTCCCTTTTG 360
|||| |||||||||||||||||||||||| || ||||||||| || | |||||||| |||
Sbjct 298 AGGGCACATGATGTGAACATCTCTTTTCGCGGCAACCCTCCTGTCAAAGAGTCCCTCTTG 357
Query 361 GTCGGATCTTTTGGATTTTTCACCGCTCCTTATGG-AGACTATTGGAAATTCATGAAGAA 419
|| ||||||| ||| |||||||||||||||||||| | | |||||||| |||||||| ||
Sbjct 358 GTTGGATCTTCTGGCTTTTTCACCGCTCCTTATGGCA-ATTATTGGAAGTTCATGAAAAA 416
Query 420 GGTCATGGTCACGAAACTGCTCGGACCGCAGGCACTACAAAGGTCTCGAGGCATCCGTGC 479
| | ||||||||||| |||||||||||||||||||| || |||| ||||||||||||||
Sbjct 417 GCTAATGGTCACGAAGCTGCTCGGACCGCAGGCACTCCAGCGGTCACGAGGCATCCGTGC 476
Query 480 AGATGCGCTAGAACGGTTTTACATGAACCTGCTTGATAAGGCGATGAAGAAGGAAAGTGT 539
||||| ||||||||||||||||| | |||| ||||||||||| | |||||| || || |
Sbjct 477 AGATGAGCTAGAACGGTTTTACAAGCACCTTCTTGATAAGGCAAGGAAGAACGAGAGCAT 536
Query 540 TGAGATTGGTAAGGAAACAATGAAGCTCATTTACGACAGCATCTGCAAGATGATTATGGG 599
|||||||||||||||| ||||||| |||||| | ||||||||||||||||| |||||||
Sbjct 537 TGAGATTGGTAAGGAAGCAATGAAACTCATTAATAACAGCATCTGCAAGATGTTTATGGG 596
Query 600 GAGGAATTTTTCTGAGGAGAATGGTGAGGCGGAGAGAGTCAGAGGCTTGGTGACCGAATC 659
||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 GAGGAGTTGTTCTGAGGAAAATGGTGAGGCAGAGAGAGTCAGAGGCTTGGTGACCGAATC 656
Query 660 GACTGCCTTGACGAAGAAGATTTTTATGGCAAACGTGTTGCACAAGCCCCTTAAGAAGCT 719
|||||||||||| |||||||| |||||||||||| ||||||||| || ||||||||||||
Sbjct 657 GACTGCCTTGACAAAGAAGATCTTTATGGCAAACATGTTGCACAGGCACCTTAAGAAGCT 716
Query 720 CGGAATCTCATTGTTCAAAAAGGAGATAATGGATGTTTCCAACAGTTTCGATGAACTGCT 779
|||||| ||| ||||||||||||||||||||| |||||| ||| ||| | ||| ||||
Sbjct 717 CGGAATATCACTGTTCAAAAAGGAGATAATGGGTGTTTCTTGCAGATTCAACGAAGTGCT 776
Query 780 --AGAAAGATTTCTTGTGGAACACGAAGAGAAACTT 813
|||| |||| |||| |||| ||||||||||||||
Sbjct 777 GTAGAA-GATT-CTTGAGGAATACGAAGAGAAACTT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5