BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20150.1
Length=3882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929937 jgi|Araly1|929937|scaffold_302394.1 5014 0.0
> Ahg929937 jgi|Araly1|929937|scaffold_302394.1
Length=3424
Score = 5014 bits (2715), Expect = 0.0
Identities = 3208/3438 (93%), Gaps = 65/3438 (2%)
Strand=Plus/Plus
Query 61 GCTGTGTCATTTGAGAAGCCATGGCAGACAATCGCATCGCCGGAAGCTTACCGACTTCCT 120
||||| ||||||| |||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 1 GCTGTTTCATTTGGGAAGCCATGGCAGACAATCGCATCGCAGGAACCTTACCCACTTCCT 60
Query 121 CCAAATGGAGTTTTCTTCCCAAATCCGTATCCTCACACTTCAAACCAAGCTCAAACCCTC 180
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTAAATGGAGTTTTCTTCCCAAATCCGTATCCTCACACTTGAAACCAAGCTCAAACCCTA 120
Query 181 GATCTTCCAATCCCGACATCGAAAACGCTCCTCCTCAAAATCCAAACATCCATAATCCGC 240
||||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 121 GATCTTCAAAGCCCGACATCGAAAACGCTCCTCCTCAAGATCCAAACATCCATACTCCGA 180
Query 241 GAAATCAATCTGTTTCTAGTAAATCAACGGCTTACAAGAATCAGATGGATTCTCCCAATT 300
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 181 TAAATCAATCTGTTTC---TAAATCACCGGCTTACAAGAATCAGATGGATTCACCCAATC 237
Query 301 GCCGAAGCCAAGTTTCAGCTTCTCGGCCAAGGGCAATATCGGCATTGAAAACTCGA-AAT 359
|| || | |||| ||||||||||||| |||||||||| ||||| ||||||||| | |||
Sbjct 238 GCAGAGGTGAAGTGTCAGCTTCTCGGCGAAGGGCAATAGCGGCAGTGAAAACTC-ACAAT 296
Query 360 GAAGTAGAAGAAGAAGGAGCCTCGAATCCACATGTAAAGGTTGTGGTGAGGATTAAACCA 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGTAGAAGAAGAAGAAGCCTCGAATCCACATGTAAAGGTTGTGGTGAGGATTAAACCT 356
Query 420 ACAAAGGAGTATTGCTGGAAAGTGAAGAAAGTTTCCAAAGTTTCATATTCTGTTAGAGAT 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 ACAAAGGAGTATTGCTGGAAAGTGAAGAAAGTTTCCAAAGATTCATATTCTGTTAGAGAT 416
Query 480 CGCCATTTTACATTTGATTCTGTTCTTGACTCAAATCTAAATCAGGACGATGTATTTCAG 539
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 417 CGCCAATTTACATTTGATTCCGTTCTCGACTCCAATCTAAATCAGGACGATGTATTTCAG 476
Query 540 CAAATTGGTGTTCCTTTGGTTAGGGATGCTTTATCAGGTTACAACACTAGTGTGCTATCA 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAAATAGGTGTTCCTTTGGTTAGGGATGCTTTATCAGGTTACAACACTAGTGTGCTATCA 536
Query 600 TATGGACAGAATGGAAGTGGGAAGACCTACACAATGTGGGGTCCTGCTGGTTCGATGCTT 659
||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 537 TATGGACAGAACGGAAGTGGGAAGACCTACACTATGTGGGGTCCTGCAGGTTCAATGCTT 596
Query 660 GAGGATCCATCTCCTAAAGGCGAGCAAGGACTCGCGCCTCGAATCTTTCAGATGCTGTTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAGGATCCATCTCCTAAAGGCGAGCAAGGACTCGCGCCTCGAATCTTTCAGATGCTGTTT 656
Query 720 TCTGAAATCCAGAGAGAGAAGATCAAGTCTGGAGGAAAAGAAGTAAATTATCAGTGCCGT 779
||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 657 TCTGAAATCCAGAGAGAGAAGATGAAGTCTGGAGGAAAAGATTTAAACTATCAGTGCCGT 716
Query 780 TGTTCTTTTCTTGAGATATACAATGGACAAATCAGTGATTTGATCGATCAAACCCAGAGA 839
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 717 TGTTCTTTTCTTGAGATATACAATGGACAAATTAGTGATTTGATCGAACAAACCCAGAGA 776
Query 840 AACCTTAAGATAAAGGATGACGCAAAGAATGGTATCTATGTCGAGAACTTGACTGAGGAA 899
||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 777 AACCTTAAGATTAAGGATGATGCAAAGAATGGTATTTACGTTGAGAACTTGACTGAGGAA 836
Query 900 TACGTAGATAGCTACGAGGATGTAGCTCAGATACTGATGAAGGGCCTTTCAAGCAGAAAA 959
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 837 TACGTAGATAGCTACGAGGATGTAGTTCAGATATTGATGAAGGGCCTTTCAAGCAGAAAA 896
Query 960 GTTGGAGCAACTAGCACAAGTTTTCAAAGTTCTCGATCACACGTCATACTTTCTTTCATT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTGGAGCAACTAGCACAAGTTTTCAAAGTTCTCGATCACACGTCATACTTTCTTTCATT 956
Query 1020 GTCGAGTCTTGGAATAAGGGAGCCTCGTCAAGATGTTTCAATACTACCAGAACAAGTAGG 1079
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 957 GTCGAGTCTTGGAATAAGGGAGCCTCATCAAGATGTTTCAATACTACCAGAACAAGCAGG 1016
Query 1080 ATCAACCTTGTTGATCTTGCTGGAGCGGGAACAAATGAACGTGATGCTACTAAACACTGC 1139
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1017 ATCAACCTTGTTGATCTTACTGGAGCGGGATCAAATGAACGTGATGCTACTAAACATTGT 1076
Query 1140 GTGGAGGAAGAGAAGTTCTTGAAGAAGTCTCTGTCGGAGCTCGGCCATGTTGTAAATTCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 GTGGAGGAAGAGAAGTTCTTGAAGAAGTCTCTGTCGGAGCTCGGCCATGTTGTAAATGCT 1136
Query 1200 CTGGCGGAAAACGTTCACCCTGGAATATCCGACCGCAGTCTTCATAAAACATCATGCTTG 1259
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1137 CTGGCGAAAAAAGTTCACCCTGGAATATCCGACCGCAGTCTTCATAAAACCTCATGCTTG 1196
Query 1260 ACGCATTTATTGCAAGAATCTCTTGGTGGAAATTCAAAACTCACTATCCTGTGCAACATT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACGCATTTATTGCAAGAATCTCTTGGTGGAAATTCAAAACTCACTATCCTGTGCAACATT 1256
Query 1320 TTTCCGAGCGACAAAGACACAAAAAGAACAATGAGCACCCTTAGATTTGGTGAACGGGCT 1379
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTCCCGAGCGACAAAGACACCAAAAGAACAATGAGCACCCTTAGATTTGGTGAACGGGCT 1316
Query 1380 AAAGCCATGGGAAACAAACCAATGATAAATGAGATCTCAGAAGAAGATGTGAATGATTTG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AAAGCCATGGGAAACAAACCAATGATAAATGAGATCTCAGAAGAAGATGTGAATGATTTG 1376
Query 1440 AGTGACCAGATTCGTCTGCTAAAGGAAGAACTTTCAAAAGTCAAAGCCGATGCTTGTCAT 1499
||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct 1377 AGTGACCAGATTCGTCTGCTAAAGGAAGAACTTACAAGAGCCAAAGCCGATGCGTGTCAT 1436
Query 1500 TCTGTTGGAAGTAAAAATGATTATTTCGGAGCAAAGAATGCACGTGAAAGTTTGAATCAA 1559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCTGTTGGGAGTAAAAATGATTATTTCGGAGCAAAGAATGCACGTGAAAGTTTGAATCAA 1496
Query 1560 CTAAGAGTTAGTCTTAACCGCTCTTTGATGCTGCCAAAAATTGATAATGACGAGGAAGAG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CTAAGAGTTAGTCTTAACCGCTCTTTGATGCTGCCAAAAATTGATAATGACGAGGAAGAG 1556
Query 1620 ATAACGGTTGATGAGGATGATTTTAAGGAACTGCATCTGCAGATCAAGTCCTTGCGTGGT 1679
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1557 ATAACGGTTGATGAGGATGATTTTAAGGAACTGCATCAGCAGATCAAGTCCTTGCGTGGT 1616
Query 1680 TCATTTAACCAGAAACTAAAGAAGTTCCCTGTCAACAGAGACTCGGTCAACTCATCCTTT 1739
||||| |||||||||||||||||| |||||||||||||||| || |||| ||| ||||||
Sbjct 1617 TCATTCAACCAGAAACTAAAGAAGCTCCCTGTCAACAGAGAGTCAGTCAGCTCTTCCTTT 1676
Query 1740 GTAACAGCATTCGGTGAATCAGAGCTAATGGATGATGATGAGATATGTTCAGAAGAAGTA 1799
||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||
Sbjct 1677 GTAACAGCATTCGGTGAATCAGAGCTAATTGATGATGATGAGATCTTTTCAGAAGCAGTA 1736
Query 1800 GAAGTTGAGGAGAATGATTTTGGTGAATCTTTGGAAGAACATGAC-A-G----TGCTGCA 1853
|||||||||||||| |||||||||||||||||||||||||||||| | | |||||||
Sbjct 1737 GAAGTTGAGGAGAAAGATTTTGGTGAATCTTTGGAAGAACATGACGACGACAGTGCTGCA 1796
Query 1854 ACAGTATGTAAATCAAGTG-AGAAATCCAGGATAGAGGAATTTGTATCGGAAAACAGCAT 1912
||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||
Sbjct 1797 ACAATATATAAATCAAGTGTA-AAATCCAGGATAAAGGAATTTGCATCGGAAAACAGCAT 1855
Query 1913 ATCAATCAGTCCCTGCCGTCAATCC-TTAATCTTGCAAGAACCCATCCAGTCAGAGTCAC 1971
|||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 1856 ATCAATCAATCCCTGCCGTCAATCCATTAA-CTTGCAAGAACCAATCCAGTCAGAGTCTC 1914
Query 1972 CTAAATTCAGAGATTCTCTACGGAAGAGCATAGCTCTTTCTTCGTCATGTCTCAGGAATC 2031
||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1915 CTAAATTCAGAGACTCTTTAAGGAAGAGCATAGCTCTTTCTTCATCATGTCTCAGGAATC 1974
Query 2032 AGAATAGCTTGGCGAAGAGCATAAAATCCACGTGTTTTGCAGAGAGCCAACATATCAGAT 2091
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1975 AGAATAGCCTGGCGCAGAGCATAAAATCCACGTGTCTTGCAGAGAGCCAACATATCAGAT 2034
Query 2092 CATCTTTACGCGGAAGCAAGATATTCACAGGTTCTACAGAATCTCTAGCTGCAAGTCTGC 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 CATCTTTACGCGGAAGCAAGATATTCACAGGTTCTACAGAATCTCTAGCTGCAAGTCTGC 2094
Query 2152 GGAGAGGCTTGGATATTATTGACAATCC-CATGAACCCTG-CATCAAACCGATGCTCAGT 2209
| |||||||||||||| ||||||||||| | |||||| || ||||||| ||||||||||
Sbjct 2095 GCAGAGGCTTGGATATCATTGACAATCCGC-TGAACC-TGGCATCAAAAAGATGCTCAGT 2152
Query 2210 TTCTTTGTCTTCTGATAACTTGACCATGCAACCTCCCACAGATGAT-C-G----AT--TA 2261
|||||||||||||||||||||||||||||||||| | ||||| ||| | | || ||
Sbjct 2153 TTCTTTGTCTTCTGATAACTTGACCATGCAACCTTCAACAGA-GATACTGCTGGATGATA 2211
Query 2262 C--CT----C---TG-TCGCC-AC-TCTGTC-CAAC-CTG-C--------AGAATTTGCA 2298
|| | || ||| | || |||||| | || ||| | ||||||||||
Sbjct 2212 AATCTTTAACAGATGATCGACTACCTCTGTCGCCACTCTGTCCTTCCTGCAGAATTTGCA 2271
Query 2299 GCTCTAAGTTACCAAGTGTAGTTGAGGGAGATGGATATCA---TATGGAAGGGGTTCTTG 2355
|||| || || ||||| |||||||| ||||||||||||| ||||||||||||| |||
Sbjct 2272 GCTCAAAAATATCAAGTTTAGTTGAGAGAGATGGATATCAGCATATGGAAGGGGTTGTTG 2331
Query 2356 AGAAGCAGCAAGAGCTTGAAAAATTGTGCTCAGAGCAAGCAGCCAAGATTGAACAGCTAA 2415
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2332 AGAAGCAGCAGGAGCTTGAAAAGTTGTGCACAGAGCAAGCAGCCAAGATTGAACAGCTAA 2391
Query 2416 CGCGCCTGGTAGGGCAACACAAACTTCAAACTGAGGATGAAACAGAAAAACTTATGGGAG 2475
| |||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct 2392 CACGCCTGGTAGAGCAACACAAAATTCAAACTGAGAATGAAACAGAAGAACTTGTGGGAG 2451
Query 2476 CAAGTAATGGAGAACGACTTCCTTCTGCAAATGAAAACCAGCTTCTC-A-GCTG---T-A 2529
|||||| || |||||||||||||||||||||||||||||||| | | | || | | |
Sbjct 2452 CAAGTAGTGAAGAACGACTTCCTTCTGCAAATGAAAACCAGCGTGACCAAGCAGAAGTCA 2511
Query 2530 TAACTGAAACATATGACGTAAAACAAATCTCGGATGATGACTCCAAGAAGACAGACTTTG 2589
||||||||| |||||| | |||||||||| | ||||| ||||| || |||||||||||||
Sbjct 2512 TAACTGAAAAATATGAAGCAAAACAAATCCCCGATGACGACTCTAAAAAGACAGACTTTG 2571
Query 2590 ATATTGGCGAGAAGGAGGCATTACTCAAAGAAATTGAGGATCTGaaaaaaaaaTTGCAGA 2649
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 2572 ATATTGGCGAGAAGGAGGCATTACTCAAAGAAATTGAAGATCTGAAAAGAAAATTGCAGA 2631
Query 2650 CGCCTGTAACCATGTCCACCAATGAACTGAGATCATCTCTGTTGGCTCGTTCGTTTCAAC 2709
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2632 CCCCTGTAACCATGTCCAGCAATGAACTGAGATCATCTCTGTTGGCTCGTTCGTTTCAAC 2691
Query 2710 TCCGTAGCAAGAATGCTGAAAAAGATATCGAGGAAGAAAGACTTAGGTGCACAGAAATGG 2769
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2692 TCCGTAACAAGAATGCTGAAAATGATATCGAGGAAGAAAGACTTAGGTGCACAGAAATGG 2751
Query 2770 AAAGCGAGTGGATATCATTGACTGACGAATTCAGAGTAGAGATTGAAACTCAACGTACAC 2829
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct 2752 AAAGCGAGTGGATATCATTGACCGACGAACTCAGAGTTGAGATTGAAACTCAACGTACTC 2811
Query 2830 GCGCAGAGAAAGCTGAAGCCCAGCTTAAACAAGAGAAACTATCTTCTGAGGAGCTAGAAG 2889
||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 2812 GCGCAGAGAAAGCTGAAGCACAGCTTAAACAAGAGAAATTATCTTCTGAGGAGTTAGAAG 2871
Query 2890 ATGCACTTCGCAGAGCTGTTCTTGGTCATGCCAGGTTTGTTGAACACTACACAGAGCTAC 2949
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2872 ATGCACTTCGAAGAGCTGTTCTTGGTCATGCCAGGTTTGTTGAACACTACACAGAGCTAC 2931
Query 2950 AAGAGAAGTACAACGACTTATGCTCAAAGCATAAAGCAACAGTGGAATGGATAACAGAGT 3009
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2932 AAGAGAAGTACAACGACTTAGGCTCAAAGCATAAAGCAACAGTGGAATGGATAACAGAGT 2991
Query 3010 TGAAGAAGGCAGTAGCAAAGGCTGGTAAAAAGGGTTGCGGTTCTCGTTTTGCTAAATCAC 3069
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2992 TGAAGAAGGCAGTAGCAAAGGCTGGTAAAAAGGGTTGCGGTTCTCGTTTCGCTAAATCAC 3051
Query 3070 TTGCTTCTGAGCTCTCAGCACTTAGAGTAGAAAGAGAACGAGAAAGAGATCTGTTGAAGA 3129
||||||||||||||||||| || ||||||||||||||| ||||||| ||| |||| ||||
Sbjct 3052 TTGCTTCTGAGCTCTCAGCTCTGAGAGTAGAAAGAGAAAGAGAAAGGGATTTGTTAAAGA 3111
Query 3130 AGGAAAACATAAGCCTCAAGATTCAACTAAGGAATACTGCTGAAGCTGTTCATACTGCTG 3189
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3112 AGGAAAACGTAAGTCTCAAGATCCAACTAAGGAATACTGCTGAAGCTGTTCATACTGCTG 3171
Query 3190 GAGAAGTTCTTGTTAGACTCAGAGAAGCCGAACAATCAGCATCAGCTGCTGAGgaaaagt 3249
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3172 GAGAAGTTCTTGTTAGACTCAGAGAAGCCGAACAATCAGCATCTGCTGCTGAGGAAAAGT 3231
Query 3250 tcaatgaagtagaagaagaaaacgagaagctaaagaagaaaatggaaaagttgaagagga 3309
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 3232 GCAATGAAGTAGAAGAAGAAAACGAGAAGCTAAAGAAGAAAATGGAAAAGCTAAAGAGGA 3291
Query 3310 gacacaagttggaagTGGTAACAATCAAAAAGAGTCTAAAGCAAAACACGTTGCCAGAAT 3369
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3292 GACACAAGTTGGAAGTGGTAACAATCAAAAAGAGTCTAAAGCAAAACACATTGCCAGAAT 3351
Query 3370 CTGCATTGCAGCCACTGCATCAGAGGAACTCGGCTATTGAGGAAGAAGGAATGTAGAAAC 3429
|||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||
Sbjct 3352 CTGCATTGCAGCCACTAAATCAGAGGAACTCAGCTATTGAGGAAG--G-AATGTAGAAA- 3407
Query 3430 ATCATTATACCAAAGTGC 3447
| ||||||||||||||||
Sbjct 3408 A-CATTATACCAAAGTGC 3424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146711943915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5