BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20155.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479536 jgi|Araly1|479536|fgenesh2_kg.3__2237__AT3G20155.1 1022 0.0
> Ahg479536 jgi|Araly1|479536|fgenesh2_kg.3__2237__AT3G20155.1
Length=811
Score = 1022 bits (553), Expect = 0.0
Identities = 696/763 (91%), Gaps = 17/763 (2%)
Strand=Plus/Plus
Query 40 AAGTTGTTCCATTGTGTCATCGAAGTTGTGCTTTTAGGGAAAAACAAGAATACAGACAGC 99
||| ||||||| || ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 24 AAGCTGTTCCAACGTATCATCTAAGTTGTGCTTTTAGGG-AAAACAAGAAT----ACAGC 78
Query 100 TCTAGAAACCAAGAACAATGAAGGGTCCTTCAGTGACATGTGTGTTTGGTGTGAACATTG 159
||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 79 TCTGGATACCAAGAACAATGAAGGGTCCTCCAGTGACATGTGTGTTTGGTGTGAATATTG 138
Query 160 GACTCAAAGGTTATCAAAAGATGTTGAATAAAATATATGAAGGCATTGAAGGTTTAAAGC 219
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 139 GACTCAAGGGTTATCAAAAGATGTTGAATAAAATATATGAGGGCATTGAAGGTTTAAAGC 198
Query 220 TCGATGTGTCAAACTGGTTGGTGTATTTACGGGGCGAGATTGATCCAATAACCTTCATTA 279
||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
Sbjct 199 TCGATGTGTCAAACTGGTTGGTGTATTTACGGGGCGAAATTGATCCTATAATCTTCATCA 258
Query 280 GGAAGATGTATAAAGCAAGAAGTTACGTTGAGCTCTTCCGAATAGATTATGGATATGAAG 339
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 259 AGAAGCTGTATAAAGCGAGAAGTTACATTGAGCTCTTCCGAATAGATTATGGATATGAAG 318
Query 340 AAAATCCACAAGGAACCCGGAGACCAAATTCTCACTTCATGAGATGTTGCTTTGAACTAA 399
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 319 AGAATCCAGAAGGAACCCGGAGACCAAGTTCTCACTTCATGAGATGTTGCTTTGAACTAA 378
Query 400 ACACATTAGATATAAGTTGGTATAAGAGAATCATAGGAGCCTTGAAAACCATCCAAGGTG 459
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 379 ACACATCAGATATAAGTTGGTATAAGAGAATCATAGGAGCTTTGAAGACCATCCAAGGTG 438
Query 460 TATCATTTACCATAGATGCACAACCGGTTATGGGAAATCCGATGGTATATTTATGTGGGA 519
||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||| |
Sbjct 439 TATCATTTACCATAGATGCACAACCAGTTATGGGATATCCGATGGCATATGTATGTGGAA 498
Query 520 ACATAGAAATTGGAGTGCTCATGAAGATGCTTGTGAAGACAGGCATTGAATTGTCAGCAA 579
| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 499 ATATAGAAATTGGAGTGCTCATGAGGATGCTTGTGAAGACAGGCATTGAACTATCAGCAA 558
Query 580 TGGAATATGGAGTCGAGTATAAAGATGCAAACTTGAACCCACCTCCTCCCAAGAAAGTTG 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 559 TGGAATATGGAGTCGAGTATAAAGATGCAAACTTGAACCCACCTCCTCCCAAGAAACCTG 618
Query 640 AGGCTCCTTCAATTGGAACAGCTGAGACAAAGGACGTGAAAGACACGGTGCCTCCTCCTC 699
|||||||||||| || ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 619 AGGCTCCTTCAAATGTAAC---TGAGACACAGCCCGTGAAAGACACGGTGCCTCCTCCTC 675
Query 700 TTCCTGAGGTT-GT---T-A---AA-CACCAAGTCGTATACAAGAAGTCTCGCGGTTTAA 750
|| | ||| || | | || ||||||||| ||||||||||| |||||||||| |
Sbjct 676 TTGAAGTTGTTAGTACATTAGCGAAACACCAAGTCATATACAAGAAGCCTCGCGGTTTTA 735
Query 751 GAAGGTTCTTTTGTTAATGAATCATGTCGTCATTAGCACCATA 793
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 736 GAAGGTTCTGTTGTTAATGAATCATGTCGTCATTAGCACCATA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5