BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20160.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929939 jgi|Araly1|929939|scaffold_302396.1 883 0.0
> Ahg929939 jgi|Araly1|929939|scaffold_302396.1
Length=1111
Score = 883 bits (478), Expect = 0.0
Identities = 783/926 (85%), Gaps = 38/926 (4%)
Strand=Plus/Plus
Query 132 AAGCTATGATTTTA-AGTTCATGTCGTATATGGTCAATAAGGCTAAGTCCGTCAATAAAG 190
||||||||| | | ||||||||||||||||| || ||| |||| || |||||| | |
Sbjct 182 AAGCTATGA-ATCAGAGTTCATGTCGTATATGATCCGTAAATCTAAATCGGTCAATGAGG 240
Query 191 CACTAGAAGAGGCTGTTCCTCTCCGCGAGCCAGAACTCAAGATCCGTGAGGCCATGAGGT 250
|||||| ||||| ||||| ||| ||||||||| || ||||||||||||||||||||||
Sbjct 241 TACTAGACGAGGCCGTTCCACTCTGCGAGCCAGTGCTGAAGATCCGTGAGGCCATGAGGT 300
Query 251 ACACGCTTCTCTCCGATGGGAAGCGTGTAAGACCAATGCTTTGCTTAGCTGCATGCGAGC 310
|||| || ||||| | ||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 301 ACACACTACTCTCGGGTGGCAAACGCGTAAGGCCAATGCTTTGCTTAGCTGCATGCGAGC 360
Query 311 TCGTGGG-GGGACAAGAGTCAACCGCAATGTCC--GCTGCATGTGCGATTGAGATGCTCC 367
||||||| ||| |||||||||||||||||| || | |||||||||| |||||||| |||
Sbjct 361 TCGTGGGCGGG-CAAGAGTCAACCGCAATG-CCTTG-TGCATGTGCGGTTGAGATGATCC 417
Query 368 ACGCGTCGTCTCTCATCCTAGACGACCTCCCTTGTATGGACAACGACAGCCTCCGACGTG 427
| || ||||| ||||||| |||||| || |||||||||||| |||||| |||||| ||||
Sbjct 418 ATGCATCGTCGCTCATCCAAGACGATCTACCTTGTATGGACGACGACAACCTCCGGCGTG 477
Query 428 GAAAACCCACTAACCATATAGTCTTTGGCGAGAGTATAGCCATATTAGC-TTCTCAAGCG 486
|||||||||| ||||||| |||||||||||| | ||||| || || || | | | |||
Sbjct 478 GAAAACCCACGAACCATAAAGTCTTTGGCGAAAACATAGCTATCTTGGCAGT-TGATGCG 536
Query 487 CTCATAGCTTTGGCTGTCCAA-AAGACCACGTCATCCACCTTTG-CGGACGTTCCCCCAG 544
|||||||||||||| | ||| | ||| | ||||||| | | ||||||||| || |
Sbjct 537 CTCATAGCTTTGGCCAT-CAAGCACACCGTGGAATCCACC-TCGTTGGACGTTCCTCCGG 594
Query 545 AGAGGATTCTCAAGACCGTTC-AGGAGATGGTTAAAGCAGT-GGAA--G--GG-CTTGTT 597
||||| ||||| | | ||| | ||||||| | ||| || |||| | || || |||
Sbjct 595 AGAGGGTTCTCCTGGCAATTCTA-GAGATGGCGAGAGCGGTGGGAACGGAAGGACTCGTT 653
Query 598 GCAGGTCAA-CAGGCGGATTTGGCTGGAGAAGGTATGAGATTTGATAGTGACACTGGATT 656
|| |||||| || || ||||||| ||| ||||| | ||| ||||||| ||||||||||||
Sbjct 654 GCGGGTCAAGCA-GCTGATTTGGATGGGGAAGGCAAGAGCTTTGATAATGACACTGGATT 712
Query 657 AGAGCATCTTGAGTTTATACATATTCATAAAACGGCGGCGTTGCTTGAAGCCGCAGCTGT 716
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 713 AAAGCATCTTGAGTTTATACATATTCATAAAACGGCGGCGTTGCTTGAAGCGGCGGCTGT 772
Query 717 TATGGGAGCTATAATGGGAGGTGGGTCTGATGAAGAGATTGAGAGGCTTCGGAGTTACGC 776
||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||| ||
Sbjct 773 TATGGGAGCTATAATGGGAGGTGGGTCAGATGAAGAGATCGAGAGGATTCGAAGTTATGC 832
Query 777 AAGATGTATTGGGTTAATGTTTCAGGTTGTGGACGATGTGCTTGATGTGACCAAATCGTC 836
||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 833 GAGATGCATTGGGTTGATGTTTCAGGTGGTTGACGATGTGCTTGATGTGACCAAGTCGTC 892
Query 837 GGAAGAGCTCGGGAAAACCGCCGGTAAAGATTTGATCGCCGGAAAA-CTGACGTATCCGA 895
||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 893 GGAAGAGCTAGGGAAAACCGCCGGTAAAGATTTGATCTC-GGAAAAGCTGACGTATCCGA 951
Query 896 -GACTGATGGGAGTGGAGAAATCGAAAGAATATGCTGAGA-GATTGAACATAGAAGCGCG 953
| ||||||||||||||||||||| ||||||||| |||| | ||||||| |||||| ||
Sbjct 952 AGG-TGATGGGAGTGGAGAAATCGAGAGAATATGCCGAGAAG-TTGAACAGAGAAGCACG 1009
Query 954 GGAACATCTT--CTAGGGTTTGATATAGACAAGG-TGGCTCCTTTGGTGTCT-CTCGCTG 1009
|||||||||| | | | |||||| |||||||| || |||||||| ||| | |||||||
Sbjct 1010 GGAACATCTTAAC-ATG-TTTGATCCAGACAAGGCTG-CTCCTTTGTTGT-TGCTCGCTG 1065
Query 1010 ATTACATTGTCAACAGACAAAACTGA 1035
||||||||||||||||||||||||||
Sbjct 1066 ATTACATTGTCAACAGACAAAACTGA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5