BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20170.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929940 jgi|Araly1|929940|scaffold_302397.1 2322 0.0
> Ahg929940 jgi|Araly1|929940|scaffold_302397.1
Length=1468
Score = 2322 bits (1257), Expect = 0.0
Identities = 1398/1468 (95%), Gaps = 2/1468 (0%)
Strand=Plus/Plus
Query 35 TTTTTCGTTATCTCCAGAAATGGGTTCTTCAGAAACGGAAAGTGAAAGCAGAGGTTTTCA 94
||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 2 TTTTTGGTTATCTCCAGAAATGGGTTCTTCAGATACTGAAAGTGGAAGCAGAGGTTTTCA 61
Query 95 AAACCCAGATTGGGAAACAGAGTTTAACCGATTCGAAAACGCGATTTCGTCTGGTTCTGC 154
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 62 AAACCCAGATTGGGAAACAGAGTTTAATCGATTCGAAAATGCGATTTCGTCTGGTTCTGC 121
Query 155 TTCAATTCGTGTAAGATCCGTTTTAAAGTTATCAGATTTGACGAATCGAGTACCTGAGAG 214
| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 122 TGCAATTCGTGTAAGATCCGTTTTAAAGTTATCAGCTTTGACGAATCGTGTACCCGAGAG 181
Query 215 CTATATATCCCGTGCAATTCCGATTCTCGCCGGTCTTCTTCGTGTCTCAGACGACTCCAA 274
|||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 182 ATATATATCCCTTTCAATTCCGATTCTCGCCGGTCTTCTTCGTGTCTCCGATGACTCCAA 241
Query 275 TCGTTCCGTTCAAGCTGCCGCCGCTCATTGCTTGAAATGTATTACCTGTTGCGGCGGTGA 334
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 242 TCGTTCCGTTCAAGCTGCCGCCGCGCATTGCTTGAAACGTATCGCCTGTTGCGGCGGTGA 301
Query 335 AGAAAGTGGATTTGCGGTGACGATGGGGAGGTGTGGTGTGATTGCTAGCTTATTAGGGTT 394
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 302 AGAAAACGGATTTGCGGTGACGATGGGGAGGTGCGGTGTGATTGCTAGCTTGTTAGGGTT 361
Query 395 GTTACTTGAAGCGAATACGGATGGTAATGTGTTTCGAAGGATTTGGGTGAAATGTTTGTG 454
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 362 GTTACTTGAGGCGAATACTAATGGTAATGTGTTTCGAAGGATTTGGGTGCAATGTTTGTG 421
Query 455 GAGCTTAGTTACTTTTGGATCTTCGATTCGAGTTGGTTTGGCTAGGTTAGGTGGTTTAGA 514
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 GAGTTTAGTTACTTTTGGATCTTCGATTCGAGTTGGTTTGGCTCGGTTAGGTGGTTTAGA 481
Query 515 GATTGTGATTCGTGAGTTGAATAATTGGGAAGATGATGGAAGTAGATGGTACTTGTTAGA 574
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 482 GATTGTGATTCGTGAGTTGAATAATTGGGAAGATGGTGGAAGTAGATGGTATTTGTTAGA 541
Query 575 GATCCTTAGTGCTTTGACGACGATTAGAGAGAGCAGACGCGTTCTTGTTCATTCAGGTGG 634
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 542 GATCCTTAGTGCTTTGACGACGATTAGAGAGAGCAGACGTGTTCTTGTTCATTCTGGAGG 601
Query 635 GCTTAAGTTTCTTGTAGAAGCTGCTAAAGTTGGGAACTTGGCCTCAAGAGAGAGAGCTTG 694
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 602 GCTTAAGTTTCTTGTAGAAGCTGCTAAAGTTGGGAACTTGGCATCGAGAGAGAGAGCTTG 661
Query 695 TCATGCTATCGGACTGATCGGTGTTACTAGACGAGCTCGGCGAATACTGGTTGAAGCAGG 754
||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 662 TCATGCTATCGGATTGATCGGTGTTACTAGACGAGCTCGGCGAATGTTAGTTGAAGCAGG 721
Query 755 AGTGATTCCAGCACTTGTGGATCTGTATCGAGATGGGGATGATAAGGCAAAGCTTTTAGC 814
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 722 AGTGATTCCAGCACTTGTGGATCTATATCGAGATGGGTTTGATAAGGCAAAGCTTTTAGC 781
Query 815 TGGTAATGCCTTAGGGATCATATCTGCTCAGACTGAGTACATTAGGCCTGTCACTGAAGC 874
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 782 TGGTAATGCCTTAGGGATCATATCTGCTCAGACCGAGTACATTAGGCCTGTCACTGAAGC 841
Query 875 TGGTTCCATTCCTTTGTATGTCGAGCTTCTCTCGGGACAAGATCCC-ATGGGGAAAGATA 933
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 842 TGGTTCCATTCCTTTGTATGTCGAGCTTCTCTCGGGACAAGA-CCCGATGGGGAAAGATA 900
Query 934 TTGCAGAGGATGTGTTCTGTATATTAGCTGTAGCTGAAGGTAATGCTGTTTTGATAGCGG 993
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 TAGCAGAGGATGTGTTCTGTATATTAGCTGTAGCTGAGGGTAATGCTGTTTTGATAGCGG 960
Query 994 AACAACTGGTGAGGATCTTGAGAGCAGGGGATAACGAAGCCAAGCTTGCAGCTTCTGATG 1053
|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 961 AACAACTGGTGAGGATCTTGAGAGAAGGGGATTACGACGCCAAGCTTGCAGCTTCTGATG 1020
Query 1054 TGTTATGGGATCTTGCGGGTTATAGGCATTCTGTATCTGTTATTAGAGGGTCTGGCGCAA 1113
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 1021 TGTTATGGGATCTTGCGGGTTATAGGCATTCTGTGTCTGTTATTAGAGAGTCTGGCGCTA 1080
Query 1114 TTCCTTTGCTTATTGAGCTTCTGAGAGATGGGTCACTTGAGTTCAGAGAGAGGATTTCTG 1173
|||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 1081 TTCCTTTGCTAATCGAGCTTTTGAGAGATGGGTCCCTTGAGTTCAGAGAGAGGATTTCGG 1140
Query 1174 GAGCTATTTCTCAGTTGAGTTACAATGAGAACGACCGTGAGGCCTTTTCTGATTCCGGTA 1233
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 GAGCTATTTCTCAGTTGAGTTACAATGAGAACGACCGTGAGGCCTTTTCGGATTCCGGTA 1200
Query 1234 TGATACCGATTCTGATTGAATGGTTGGGGGATGAGTCGGAAGAGCTCAGGGATAACGCAG 1293
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1201 TGATACCGATTTTGATTGAATGGTTGGGGGATGAGTCAGAAGAGCTCAGGGATAATGCAG 1260
Query 1294 CTGAGGCACTTATTAATTTTTCTGAAGACCAAGAGCATTATGCTAGAGTGCGTGAGGCAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 CTGAGGCACTTATTAATTTTTCTGAAGACCAAGAGCATTATGCTAGAGTACGTGAGGCAA 1320
Query 1354 TAGGCCATCCTGTGTTTCAGAGTATGCAGAGCAGACTGGCTAGAATCCGAGCTTCCCATG 1413
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TAGGTCATCCTGTGTTTCAGAGTATGCAGAGCAGACTGGCTAGAATCCGAGCTTCCCATG 1380
Query 1414 AACTGATGGTTCGATCAATGCGAAGGGTTACAATCCAACATCTTGCCCATGACCATGATC 1473
||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1381 AACTGATGGTTCGGTCAATGCGAAGGGTTACAATCGAACATCTTGCCCATAACCATGATC 1440
Query 1474 TTCCATGATCTGAAGGGCAAATTAAGCT 1501
|||| |||||||| ||||||||||||||
Sbjct 1441 TTCCCTGATCTGATGGGCAAATTAAGCT 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5