BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G20180.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479538 jgi|Araly1|479538|fgenesh2_kg.3__2239__AT3G20180.1         590    3e-168


> Ahg479538 jgi|Araly1|479538|fgenesh2_kg.3__2239__AT3G20180.1
Length=355

 Score =  590 bits (319),  Expect = 3e-168
 Identities = 343/355 (97%), Gaps = 0/355 (0%)
 Strand=Plus/Plus

Query  1    ATGCGTATCAAACTGTCAGTGAATAGTGAAAAATGCAGGAAGAAGGCAATGCAAGTAGCA  60
            |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGCGTATCAAATTGTCAGTGAACAGTGAAAAATGCAGGAAGAAGGCAATGCAAGTGGCA  60

Query  61   GTTGCTGCAGATGGTGTAACTTCAGTGGCCATGGAAGGAGAATTTCAGGATGAGCTTGTG  120
            |||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  61   GTTGTTGCAAATGGTGTAACTTCAGTGGCGATGGAAGGGGAATTTCAGGATGAGCTTGTG  120

Query  121  GTTGTTGGAGATGGAGTGGATTCAGCTTCTTTGATTATGGCCTTAAGGAAGAAAGCATGT  180
            ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct  121  GTTGTTGGAGATGGAGTGGATGCAGCGTCTTTGATTATGGCCTTGAGGAAGAAAGCATGT  180

Query  181  CATGTCACTCTTGAGACTCTTGAAGAAGTGAAGAAGCCACAGGTCGAAGAGAAGTCTATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  CATGTCACTCTTGAGACTCTTGAAGAAGTGAAGAAGCCACAGGTCGAAGAGAAGTCTGTT  240

Query  241  ACACCGCATTGCTGCATAGCTCAATGTCCTGTGGTTAGCAATGAGCAGCCAAGGCCTGAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACACCGCATTGCTGCATAGCTCAATGTCCTGTGGTTAGCAATGAGCAGCCAAGGCCTGAG  300

Query  301  GTTTATAGAATAGTGCATGATTCTTATGGTCCAACCACTGGGTGCTTAGTTATGT  355
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  301  GTTTATAGAATAGTGCATGATTCTTATGGTCCAACTACTGGGTGCTTAGTTATGT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5