BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20190.1 Length=2272 Score E Sequences producing significant alignments: (Bits) Value Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1 3428 0.0 Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1 656 0.0 > Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1 Length=2237 Score = 3428 bits (1856), Expect = 0.0 Identities = 2139/2271 (94%), Gaps = 38/2271 (2%) Strand=Plus/Plus Query 1 AAAAGAGGTAAG-ATTGTTCTTGAAGAATCGATTCTATAGAGCGTGTTAGCTTCAATGCT 59 ||||||||| || ||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 1 AAAAGAGGT-AGAATTGTTCTTGAAGAATCGA-TCTATAGCGCGTGTTAGCTGCAATGCT 58 Query 60 AACTTGGGAGACCCCAGTTATGCTTGCAAGCAACACCGCCTCAACCAAAAAGCTAGCCTT 119 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 59 AACTTGGGAGACCCCAGTTATGCTTGCAAGCAACACCGCCTCAACGAAAAAGCTTGCCTT 118 Query 120 CATTACCACCTTTCTCATCATTGTGTTATGT-CCGGTCACAATGGTCATGTCTCAGCCGC 178 |||||||||||| |||||||||||||||| | |||| ||||||||| ||||||||||||| Sbjct 119 CATTACCACCTTCCTCATCATTGTGTTAT-TCCCGGACACAATGGTTATGTCTCAGCCGC 177 Query 179 AGGCGGATGTTTTGCCACTGCCAGCCTCAGACGCAGATTGCCTCTTGAGATTTAAAGATA 238 ||||||| ||| |||||||||||| ||||||||||||||| ||||||| ||| ||||||| Sbjct 178 AGGCGGACGTTGTGCCACTGCCAGGCTCAGACGCAGATTGTCTCTTGAAATTCAAAGATA 237 Query 239 CTTTGGTTAATGCATCGTTCATTAGCAGTTGGGATCCTTCCATCTCCCCGTGTAAGCGAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTTTGGTTAATGCATCGTTCATTAGCAGTTGGGATCCTTCCATCTCCCCGTGTAAGCGAA 297 Query 299 ACTCAGAGAATTGGTTCGGTGTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCG 358 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 298 ACTCGGAGAATTGGTTCGGCGTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCG 357 Query 359 AAGGAATGGGCTTAACCGGGAAGCTTGACCTTGAACCATTAGCTGCAATCAAGAATCTAC 418 |||||||||| |||||||| ||||| |||||||||||||||||| | ||||||||||||| Sbjct 358 AAGGAATGGGGTTAACCGGAAAGCTAGACCTTGAACCATTAGCTCCGATCAAGAATCTAC 417 Query 419 GAACCTTGAGCTTCATGAACAACAAATTTAACGGTTCAATGCCATCTGTCAAGAATTTTG 478 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | | Sbjct 418 GAACCTTAAGCTTCATGAACAATAAATTTAACGGTTCAATGCCATCTGTCAAGAATCTCG 477 Query 479 GTGCGTTGAAATCATTGTACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCGGATG 538 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 478 GTGCGTTGAAGTCATTGTACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCCGATG 537 Query 539 CGTTTGATGGTATGCATCATTTGAAGAAGCTTCTGTTGGCTAACAACGCGTTTCGAGGGA 598 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 538 CGTTTGATGGTATGCATCATTTGAAGAAGCTTCTGTTGGCTAACAACGCATTTCGGGGGA 597 Query 599 GTATCCCTTCTTCTTTAGCTTATTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGGAATC 658 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 598 ACATCCCTTCTTCTTTAGCTTCTTTGCCAATGCTTTTAGAGTTGAGGGTAAATGGGAATC 657 Query 659 AGTTTCATGGGGAAATACCTTATTTTAAACAAAAGGACCTTAAGTTGGCTAGCTTCGAAA 718 ||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||| Sbjct 658 AGTTTCATGGGCAAATACCTGATTTTAAACAGAAGGATCTTAAGTTGGCTAGCTTCGAAA 717 Query 719 ACAATGACCTCGAGGGACCTATACCGGAAAGCCTTAGCAACATGGATCCTGTCTCCTTTT 778 ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 718 ACAATGACCTCGAGGGACCTATACCGGGAAGCCTTAGCAATATGGATCCTGGCTCCTTTT 777 Query 779 CAGGGAACAAGAACTTGTGTGGTCCTCCACTAAGCCCATGTTCGAGTGATTCAGGATCTT 838 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 778 CAGGGAACAAGAACTTGTGTGGACCTCCACTAAGCCCATGTTCGAGTGATTCGGGATCTT 837 Query 839 CTCCGGATCTCCCTTCTAGTCCCACGGAAAAGAACAAGAACCAATCTTTCTTCATCATTG 898 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 838 CTCCGGATCTCCCTTCTAGTCCCACGGAGAAGAACAAGAACCAATCTTTCTTCACCATTG 897 Query 899 CAATTGTTCTGATTGTCATTGGGATAATACTGATGATCATTTCGCTTGTGGTCTGTATCC 958 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CTATTGTTCTGATTGTTATTGGGATAATACTGATGATCATTTCGCTTGTGGTCTGTATCC 957 Query 959 TTCATACCAGAAGACGCAAGA-GTTTGTCGGCTTATCCATCCGCGGGTCAGGACAGGACA 1017 || ||||||||| ||| || | ||||||||| ||||||||||||||||||||||||||| Sbjct 958 TTGATACCAGAAAACGGAA-ATCTTTGTCGGCCTATCCATCCGCGGGTCAGGACAGGACA 1016 Query 1018 GAGAAATACAACTACGATCAATCTACGGACAAGGATAAAGCTGCAGATTCTGTAACGAGT 1077 ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 1017 GAGAAATACAATTACGATCAATCCACGGACAAGGACAAAGCCGCAGATTCTGTCACGAGT 1076 Query 1078 TACACTAGTAGAAGAGGAGCAGTACCGGATCAGAATAAACTCTTGTTTTTGCAAGATGAC 1137 ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1077 TACACTAGTAGGAGGGGAGCAGTACCAGATCAGAATAAACTCTTGTTTTTGCAAGATGAC 1136 Query 1138 ATTCAAAGATTTGACCTTCAAGATCTTCTTAGAGCCTCTGCTGAAGTTCTTGGGAGCGGA 1197 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1137 ATTCAGAGATTTGACCTTCAAGATCTTCTTAGAGCCTCTGCTGAAGTTCTTGGGAGTGGA 1196 Query 1198 AGCTTTGGCT-CTTCTTATAAAACTGGGATAAATAGCGGACAGATGCTGGTCGTGAAGAG 1256 |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1197 AGCTTTGG-TGCTTCTTATAAAACTGGGATAAATAGCGGACAGACGCTGGTCGTGAAGAG 1255 Query 1257 GTATAAACATATGAACAATGTTGGAAGAGATGAGTTTCATGAGCATATGAGACGGTTAGG 1316 ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 1256 GTATAAACATATGAACAATGTCGGAAGAGAGGAGTTTCATGACCATATGAGACGGTTAGG 1315 Query 1317 GAGATTGAAACATCCGAATCTGTTGCCTATTGTGGCTTACTATTACCGCAGAGAAGAGAA 1376 ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1316 GAGATTGAACCATCCAAATCTGTTGCCTATTGTGGCATACTATTACCGCAGAGAAGAGAA 1375 Query 1377 GCTCTTGATCGCTGAGTTCATGCCAAATCGTAGCTTGGCAAGCCATCTTCACGCGAATCA 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 GCTCTTGATCGCTGAGTTCATGCCAAATCGTAGCTTGGCAAGCCATCTTCACGCGAATCA 1435 Query 1437 TTCTGTGGATCAACCGGGATTGGATTGGCCAACAAGGCTAAAGATTATACAAGGAGTGGC 1496 |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1436 TTCTGTTGATCAACCTGGATTGGATTGGCCAACAAGGGTAAAGATTATACAAGGAGTGGC 1495 Query 1497 TAAGGGTTTAGGTTACTTGTTCAACGAGCTAACAACCCTAACAATCCCTCACGGTCATCT 1556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 TAAGGGTTTAGGTTACTTGTTCAACGAGCTAACAACCCTAACAATCCCTCACGGTCATCT 1555 Query 1557 CAAGTCATCGAACGTTGTATTGGACGAATCATTTGAGCCACTCCTAACCGATTATGCACT 1616 ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| Sbjct 1556 CAAGTCATCGAACGTTGTATTGGACGAATCATTCGAGCCTCTCTTAACCGATTATGCACT 1615 Query 1617 AAGACCAGTGATGAACTCAGAGCAGTCTCACAATCTAATGATCTCTTATAAATCACCAGA 1676 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1616 AAGACCGGTGATGAACTCAGAGCAGTCTCACAATCTAATGATCTCATATAAATCACCAGA 1675 Query 1677 GTATAGCTTAAAGGGACATCTAACTAAAAAGACAGATGTTTGGTGCCTGGGGGTATTGAT 1736 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 1676 GTATAGCTTAAAGGGACATCTAACAAAAAAGACAGATGTTTGGTGCCTCGGGGTTTTGAT 1735 Query 1737 CTTGGAGCTTTTAACAGGTAGGTTTCCGGAGAATTATCTAAGCCAAGGGTACGATGCTAA 1796 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 CTTGGAGCTATTAACAGGTAGGTTTCCGGAGAATTATCTAAGCCAAGGGTACGATGCTAA 1795 Query 1797 CATGAGCCTCGTAACTTGGGTGAGCAACATGGTTAAGGAGAAGAAAACAGGTGACGTGTT 1856 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1796 CATGAGCCTCGTAACTTGGGTCAGCAACATGGTTAAGGAGAAGAAAACGGGTGACGTGTT 1855 Query 1857 TGACAAGGAAATGACTGGGAAGAAAAACTGCAAAGCAGAGATGCTAAACCTTTTGAAAAT 1916 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1856 TGACAAGGAAATGACTGGGAAGAAGAACTGCAAAGCAGAGATGCTAAACCTTTTGAAAAT 1915 Query 1917 CGGGTTGAGTTGTTGCgaagaagatgaagaaaggaggatggagatgagagatgctgtgga 1976 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1916 CGGGTTGAGTTGTTGCGAAGAAGATGAAGAAAGGAGGATGGAGATGAGAGATGCGGTGGA 1975 Query 1977 gaagatagagaggttaaaagaaggagagTTTGACAATGATTTCGCATCGACGACACATAA 2036 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 1976 GAAGATAGAGAGGTTAAAAGAAGGAGAATTTGACAATGATTTCGCATCGACGACAAATAA 2035 Query 2037 TGTCTTTGCTTCTCGGTTGATAGACGACGATGACTTTGGTTTCGCCATGAATCGATGATG 2096 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2036 TGTCTTCGCTTCTCGGTTGATAGATGACGATGACTTTGGTTTCGCCATGAATCGATGATG 2095 Query 2097 AAACTGATCAGTCTTCTCCAGAACAATGGAAAAAGCTAAACAATTTGTAATCTTTGATGC 2156 | ||||||||||||| ||||| ||||||||| ||||||||||||||||||||| | | Sbjct 2096 A---TGATCAGTCTTCTTCAGAAGAATGGAAAA-GCTAAACAATTTGTAATCTTTT-T-C 2149 Query 2157 CAAATAAAAAGAAGAACTTTCTTTTTCTTCTTTGTTATGTAACTTTTTCCATTCTTATAA 2216 | | ||| || ||| | ||||||||||||||||||| |||| || Sbjct 2150 ----T-----G------TTTGTT---CTT-T--GTTATGTAACTTTTTCCATCCTTA-AA 2187 Query 2217 ATCATTCTCTTCGTGTAATTGTAAATCCATTTTGCAGAGTTTTGAAAATTT 2267 ||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2188 -TCACTCTCTTCGTGTAATTGTAAATCCATTTTGCAGAGTTTTGAAAGTTT 2237 > Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1 Length=2305 Score = 656 bits (355), Expect = 0.0 Identities = 977/1265 (77%), Gaps = 92/1265 (7%) Strand=Plus/Plus Query 882 ATCTTTCTT-CA-TCATTGCAATTGTTCTGATTGTCATTGGGATAATACTGA-TGATCAT 938 |||||| || || || | ||||| || ||||||| ||||| |||||||| | ||||||| Sbjct 866 ATCTTT-TTACACTC-TAGCAATCATTTTGATTGTTATTGGCATAATACT-AGTGATCAT 922 Query 939 TTCGCTTGTGGTCTGTATCCTTCATACCAGAAGACGCAAGA-GT-TTGTCGGCTTATCCA 996 |||||||| ||| | || |||| || |||||||| || | | ||||| |||||||| Sbjct 923 CGCGCTTGTGTTCTTTTTCGTTCAAACAAGAAGACG-AA-ATTTCTTGTCAGCTTATCCT 980 Query 997 TCCGCGGGTCAGGACAGGACAGAGAAATACAACTA-CGATCAAT-C-TACG-GACAAGGA 1052 || || || | || |||| ||||| || || || | |||||| | | | | || | Sbjct 981 TCAGCTGGAAAAGAAAGGATAGAGAGCTATAATTATC-ATCAATCCGCAAGCAAGAACAA 1039 Query 1053 TAAAGCTGCAGATTCTGTAACGAGTTACACTAGTAGAAGAGGAGCAGTACCGGAT-CAGA 1111 |||| | || || || || || | |||| | || |||||| || | || ||| ||| Sbjct 1040 TAAACCCGCGGAATCCGTTGTGAATCACAC-A--AGGAGAGGATCAATGCCTGATCCAGG 1096 Query 1112 ATAAACTCTTGT-TTT-TGCAAGATGACATTCAAAGATTTGACCTTCAAGATCTTCTT-A 1168 | || ||| | ||| | | ||| |||||||||||||| | |||||||||||| || | Sbjct 1097 AGGAAGGCTTCTATTTGTACGAGACGACATTCAAAGATTCGGTCTTCAAGATCTT-TTGA 1155 Query 1169 GAGCCTCTGCTGAAGTTCTTGGGAGCGGAAGC-TTTGGCT-CTTCTTATAAAACTGGGAT 1226 |||| || |||||||||||||| || |||| | ||||| | |||| || ||| | | ||| Sbjct 1156 GAGCTTCAGCTGAAGTTCTTGGTAGTGGAA-CATTTGG-TGCTTCATACAAAGCCGCGAT 1213 Query 1227 AAATAGCGGACAGATGCTGGTCGTGAAGAGGTATAAACATATGAACAATGTTGGAAGAGA 1286 | ||| ||||| | |||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1214 ATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATATGAACAATGTCGGAAGAGA 1273 Query 1287 TGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTGAAAC-ATCCGAATCTGTTGCCTA 1345 |||||||||||||||||||||||||||||||||||| |||| |||||||| | |||||| Sbjct 1274 TGAGTTTCATGAGCATATGAGACGGTTAGGGAGATT-AAACCATCCGAATATATTGCCTC 1332 Query 1346 TTGTGGCTT-ACTATTACCGCAGAGAAGAGAAGCT-CTTGATCGCTGAGTTCATGCCAAA 1403 | || |||| ||||||||| ||| | |||||||| || ||| || | || ||||| || Sbjct 1333 TCGTCGCTTTACTATTACC--AGA-A-GAGAAGCTTCTA-ATCACTCAATTAATGCCTAA 1387 Query 1404 TCGTAGCTTGGCAAGCCATCTTCACGCGAATCATTCTG-TGGATCAACCGGGATTGGATT 1462 | |||||||||||| ||||||||| ||||||||||| | ||||| || ||||||| Sbjct 1388 TAGTAGCTTGGCAAACCATCTTCATGCGAATCATTCCGCTGGATT----GG-ATTGGAT- 1441 Query 1463 GGCCAACAAGGCTAAAGATTATACAAGGAGTGGCTAAGGGTTTAGGTTACTTGTTCAACG 1522 |||| | |||||||| ||| ||||||| || ||||||||| |||||||||| ||| Sbjct 1442 ----AACACGTCTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTGTTCGACG 1497 Query 1523 AGCTAACAACCCTAACAATCCCTCACGGTCATCTCAAGTCATCGAACGTTGTATTGGACG 1582 || || |||| ||||| || ||||| |||||| | |||||||||||| |||| || |||| Sbjct 1498 AGTTACCAACACTAACGATACCTCATGGTCATATAAAGTCATCGAACATTGTTTTAGACG 1557 Query 1583 AATCATTTGAGCCACTCCTAACCGATTATGCACTAAGACCAGTGATGAACTCAGAGCA-G 1641 |||||||||| ||| | |||| ||||| || || ||||| ||||||| ||||||||| | Sbjct 1558 AATCATTTGAACCATTGTTAACAGATTACGCTCTTAGACCGGTGATGAGCTCAGAGCACG 1617 Query 1642 TCTCACAATCTA-ATGATCT-CTTATAAATCACCAGAGTATAG-CT-T--AAAGGGACA- 1694 | || || || |||| | | || ||||| ||||||||||| | | |||||| || Sbjct 1618 -CACATAA-CTTCATGA-CAGCGTACAAATCGCCAGAGTATAGACCATCGAAAGGG-CAA 1673 Query 1695 -TC-TAACTAAAAAGACAGATGTTTGGTGCCTGGGGGTATTGATCTTGGA-GCTTTTAAC 1751 || |||| || ||||||||||||||||| | || || ||||||||||| | |||| || Sbjct 1674 GTCATAACGAAGAAGACAGATGTTTGGTGTTTCGGTGTGTTGATCTTGGAAG-TTTTGAC 1732 Query 1752 AGGTAGGTTTCCGGAGAATTATCT-AA-GCCAAGGGTACGATGCTAACATGAGCCTCGTA 1809 ||| || || || || ||||| || || || |||| || ||| | |||||||| || || Sbjct 1733 AGGGAGATTCCCTGAAAATTA-CTTAACGC-AAGGTTATGATTCGAACATGAGTCTTGTG 1790 Query 1810 ACTTGGGTGAGCAACATGGTTAAGGAGAAGAAAACAGGTGACGTGTTTGACAAGGAAATG 1869 |||||||||| | | ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1791 ACTTGGGTGAACGATATGGTCAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAAATG 1850 Query 1870 ACTGGGAAGAAA-AACTGCAAAGCAGAGATGCTAAACCTT-TTGAAAATCGGGTTGAGTT 1927 | || || ||| || || ||||| || ||| | || || |||||| | || ||||| | Sbjct 1851 AAAGGAAA-AAAGAATTGTAAAGCGGAAATGATCAAT-TTGTTGAAAGTTGGTTTGAGAT 1908 Query 1928 GTTGCgaagaagatgaagaaaggaggat-ggagatgagagatgctgtggagaagatagag 1986 | ||||||||||| ||||| ||||| || ||| |||||||| | |||||||| | | ||| Sbjct 1909 GCTGCGAAGAAGAAGAAGAGAGGAG-ATTGGACATGAGAGAAGTTGTGGAGATGGTTGAG 1967 Query 1987 aggttaaaagaaggagagTTTGACA-ATGATTT-----C---G---CATCGACG-ACACA 2033 | ||| | ||||||||| | ||| | ||||||| | | |||||| | || || Sbjct 1968 ATGTTGAGAGAAGGAGAATCTGA-AGATGATTTTGGTTCTATGGATCATCGAGGGACTCA 2026 Query 2034 TAATG-TCT-T-TGCTTCTCG-GTTGATAGACGACGATGACTTTGGTTTCGCCATGAATC 2089 |||| | | | | |||| | |||| ||||||| ||||||||||||||| | ||||||| Sbjct 2027 TAATAATTTATATTCTTC-CATGTTGTTAGACGATGATGACTTTGGTTTCTCGATGAATC 2085 Query 2090 GATGA 2094 ||||| Sbjct 2086 GATGA 2090 Score = 411 bits (222), Expect = 2e-113 Identities = 500/631 (79%), Gaps = 31/631 (5%) Strand=Plus/Plus Query 205 TCAGACGCAGATTGCCTCTTGAGATTTAAAGATACTTTGGTTAATGCATCGTTCA-TTAG 263 ||||| |||||||| ||||||||||| |||||||| || | |||| || | ||| Sbjct 168 TCAGATGCAGATTGTCTCTTGAGATTCAAAGATACATTAGCAAATGGTTC-AGAATTTA- 225 Query 264 C-AGTTGGGATCC-TTCCATC-TCCCCGTGT-AAGCGAAACTCAG-AGAATTGGTTCGGT 318 | ||||||||||| || | | || || ||| ||| ||||| ||| | |||||||| ||| Sbjct 226 CTAGTTGGGATCCATT--AACATCACCATGTCAAG-GAAACACAGCA-AATTGGTTTGGT 281 Query 319 GTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCGAAGGAATGGGCTTAACCGGG 378 ||||| | || || | | | |||||||| |||||||||| |||||||| || || ||| Sbjct 282 GTTCT-T-TG-TAGCAATTACGTTTGGGGATTACAACTCGAGGGAATGGGTTTGACTGGG 338 Query 379 AAGCTT-GACCTTGAACCATTAGCTGCAATCAAGAATCTACGAACCTTGAGCTTCATGAA 437 || || |||| || ||||| | | | || |||||||| |||||| | ||||||||||| Sbjct 339 AA-ATTAAACCTCGACCCATTGGTTCCTATGAAGAATCTGCGAACCATAAGCTTCATGAA 397 Query 438 CAACAAATTTAACGGTTCAATGCCATC-TGTCAAGAATTTTGGTGCGTTGAAATCATTGT 496 ||| || || || || ||||||| || || |||| ||| | || ||||||| |||| Sbjct 398 CAATAACTTCAATGGCCCAATGCC-TCAAGTTAAGAGGTTTACTTCGCTGAAATCTTTGT 456 Query 497 ACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCGGATGCGTTT-GATGGTATG-CA 554 | |||||||| ||||||||| | |||||||||||||||||||| ||| || |||||| || Sbjct 457 ATTTGTCTAATAACCGGTTTTCGGGGGAGATACCCGCGGATGCATTTCGA-GGTATGCCA 515 Query 555 TCATTTGAAGAAGCTTCTGTTGGCTAACAACGCGTTTCGAGGGAGTATCCCTTCTTCTTT 614 | ||||||||| || ||||||| || |||||||| ||||| | || ||||||||| | Sbjct 516 -CTTTTGAAGAAAATTTTGTTGGCGAATAACGCGTTCCGAGGAACAATTCCTTCTTCTCT 574 Query 615 AG-CTTATTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGGAATCAGTTTCATGGGGAAA 673 | || | |||||||||||||||||||||||||||||||| ||||| ||||| ||| ||| Sbjct 575 GGCCTCA-TTGCCAATGCTTTTAGAGTTGAGGCTAAATGGTAATCAATTTCAAGGGCAAA 633 Query 674 TACCTTATTTTAAACAAAAGGACCTTAAGTTGGCTAGCTTCGAAAACAATGACCTCGAGG 733 |||| | |||| |||||||||| ||||| | |||||||| ||||||||||| || || | Sbjct 634 TACCATCTTTTCAACAAAAGGATCTTAAACTAGCTAGCTTTGAAAACAATGATCTTGATG 693 Query 734 GACCTATACCGGAAAGCCTTAGCAACATGGATCCTGTCTCCTTTT-CAGGGAACAA-GAA 791 |||| ||||| ||||||||| | ||||||||||| | ||| |||| |||| ||||| || Sbjct 694 GACCGATACCCGAAAGCCTTCGAAACATGGATCCAGGCTC-TTTTGCAGGTAACAAAGAT 752 Query 792 CTTGTGTGGTCCTCCACT-AAGCCCATGTTC 821 ||||||| | |||| || ||| |||||||| Sbjct 753 -TTGTGTGATGCTCC-CTTAAGTCCATGTTC 781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85550690270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5