BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20190.1
Length=2272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1 3428 0.0
Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1 656 0.0
> Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1
Length=2237
Score = 3428 bits (1856), Expect = 0.0
Identities = 2139/2271 (94%), Gaps = 38/2271 (2%)
Strand=Plus/Plus
Query 1 AAAAGAGGTAAG-ATTGTTCTTGAAGAATCGATTCTATAGAGCGTGTTAGCTTCAATGCT 59
||||||||| || ||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1 AAAAGAGGT-AGAATTGTTCTTGAAGAATCGA-TCTATAGCGCGTGTTAGCTGCAATGCT 58
Query 60 AACTTGGGAGACCCCAGTTATGCTTGCAAGCAACACCGCCTCAACCAAAAAGCTAGCCTT 119
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 59 AACTTGGGAGACCCCAGTTATGCTTGCAAGCAACACCGCCTCAACGAAAAAGCTTGCCTT 118
Query 120 CATTACCACCTTTCTCATCATTGTGTTATGT-CCGGTCACAATGGTCATGTCTCAGCCGC 178
|||||||||||| |||||||||||||||| | |||| ||||||||| |||||||||||||
Sbjct 119 CATTACCACCTTCCTCATCATTGTGTTAT-TCCCGGACACAATGGTTATGTCTCAGCCGC 177
Query 179 AGGCGGATGTTTTGCCACTGCCAGCCTCAGACGCAGATTGCCTCTTGAGATTTAAAGATA 238
||||||| ||| |||||||||||| ||||||||||||||| ||||||| ||| |||||||
Sbjct 178 AGGCGGACGTTGTGCCACTGCCAGGCTCAGACGCAGATTGTCTCTTGAAATTCAAAGATA 237
Query 239 CTTTGGTTAATGCATCGTTCATTAGCAGTTGGGATCCTTCCATCTCCCCGTGTAAGCGAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTTGGTTAATGCATCGTTCATTAGCAGTTGGGATCCTTCCATCTCCCCGTGTAAGCGAA 297
Query 299 ACTCAGAGAATTGGTTCGGTGTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCG 358
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTCGGAGAATTGGTTCGGCGTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCG 357
Query 359 AAGGAATGGGCTTAACCGGGAAGCTTGACCTTGAACCATTAGCTGCAATCAAGAATCTAC 418
|||||||||| |||||||| ||||| |||||||||||||||||| | |||||||||||||
Sbjct 358 AAGGAATGGGGTTAACCGGAAAGCTAGACCTTGAACCATTAGCTCCGATCAAGAATCTAC 417
Query 419 GAACCTTGAGCTTCATGAACAACAAATTTAACGGTTCAATGCCATCTGTCAAGAATTTTG 478
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 418 GAACCTTAAGCTTCATGAACAATAAATTTAACGGTTCAATGCCATCTGTCAAGAATCTCG 477
Query 479 GTGCGTTGAAATCATTGTACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCGGATG 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 GTGCGTTGAAGTCATTGTACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCCGATG 537
Query 539 CGTTTGATGGTATGCATCATTTGAAGAAGCTTCTGTTGGCTAACAACGCGTTTCGAGGGA 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 538 CGTTTGATGGTATGCATCATTTGAAGAAGCTTCTGTTGGCTAACAACGCATTTCGGGGGA 597
Query 599 GTATCCCTTCTTCTTTAGCTTATTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGGAATC 658
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 598 ACATCCCTTCTTCTTTAGCTTCTTTGCCAATGCTTTTAGAGTTGAGGGTAAATGGGAATC 657
Query 659 AGTTTCATGGGGAAATACCTTATTTTAAACAAAAGGACCTTAAGTTGGCTAGCTTCGAAA 718
||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct 658 AGTTTCATGGGCAAATACCTGATTTTAAACAGAAGGATCTTAAGTTGGCTAGCTTCGAAA 717
Query 719 ACAATGACCTCGAGGGACCTATACCGGAAAGCCTTAGCAACATGGATCCTGTCTCCTTTT 778
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 718 ACAATGACCTCGAGGGACCTATACCGGGAAGCCTTAGCAATATGGATCCTGGCTCCTTTT 777
Query 779 CAGGGAACAAGAACTTGTGTGGTCCTCCACTAAGCCCATGTTCGAGTGATTCAGGATCTT 838
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 778 CAGGGAACAAGAACTTGTGTGGACCTCCACTAAGCCCATGTTCGAGTGATTCGGGATCTT 837
Query 839 CTCCGGATCTCCCTTCTAGTCCCACGGAAAAGAACAAGAACCAATCTTTCTTCATCATTG 898
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 838 CTCCGGATCTCCCTTCTAGTCCCACGGAGAAGAACAAGAACCAATCTTTCTTCACCATTG 897
Query 899 CAATTGTTCTGATTGTCATTGGGATAATACTGATGATCATTTCGCTTGTGGTCTGTATCC 958
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTATTGTTCTGATTGTTATTGGGATAATACTGATGATCATTTCGCTTGTGGTCTGTATCC 957
Query 959 TTCATACCAGAAGACGCAAGA-GTTTGTCGGCTTATCCATCCGCGGGTCAGGACAGGACA 1017
|| ||||||||| ||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 958 TTGATACCAGAAAACGGAA-ATCTTTGTCGGCCTATCCATCCGCGGGTCAGGACAGGACA 1016
Query 1018 GAGAAATACAACTACGATCAATCTACGGACAAGGATAAAGCTGCAGATTCTGTAACGAGT 1077
||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 1017 GAGAAATACAATTACGATCAATCCACGGACAAGGACAAAGCCGCAGATTCTGTCACGAGT 1076
Query 1078 TACACTAGTAGAAGAGGAGCAGTACCGGATCAGAATAAACTCTTGTTTTTGCAAGATGAC 1137
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 TACACTAGTAGGAGGGGAGCAGTACCAGATCAGAATAAACTCTTGTTTTTGCAAGATGAC 1136
Query 1138 ATTCAAAGATTTGACCTTCAAGATCTTCTTAGAGCCTCTGCTGAAGTTCTTGGGAGCGGA 1197
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 ATTCAGAGATTTGACCTTCAAGATCTTCTTAGAGCCTCTGCTGAAGTTCTTGGGAGTGGA 1196
Query 1198 AGCTTTGGCT-CTTCTTATAAAACTGGGATAAATAGCGGACAGATGCTGGTCGTGAAGAG 1256
|||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 AGCTTTGG-TGCTTCTTATAAAACTGGGATAAATAGCGGACAGACGCTGGTCGTGAAGAG 1255
Query 1257 GTATAAACATATGAACAATGTTGGAAGAGATGAGTTTCATGAGCATATGAGACGGTTAGG 1316
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1256 GTATAAACATATGAACAATGTCGGAAGAGAGGAGTTTCATGACCATATGAGACGGTTAGG 1315
Query 1317 GAGATTGAAACATCCGAATCTGTTGCCTATTGTGGCTTACTATTACCGCAGAGAAGAGAA 1376
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 GAGATTGAACCATCCAAATCTGTTGCCTATTGTGGCATACTATTACCGCAGAGAAGAGAA 1375
Query 1377 GCTCTTGATCGCTGAGTTCATGCCAAATCGTAGCTTGGCAAGCCATCTTCACGCGAATCA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GCTCTTGATCGCTGAGTTCATGCCAAATCGTAGCTTGGCAAGCCATCTTCACGCGAATCA 1435
Query 1437 TTCTGTGGATCAACCGGGATTGGATTGGCCAACAAGGCTAAAGATTATACAAGGAGTGGC 1496
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 TTCTGTTGATCAACCTGGATTGGATTGGCCAACAAGGGTAAAGATTATACAAGGAGTGGC 1495
Query 1497 TAAGGGTTTAGGTTACTTGTTCAACGAGCTAACAACCCTAACAATCCCTCACGGTCATCT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TAAGGGTTTAGGTTACTTGTTCAACGAGCTAACAACCCTAACAATCCCTCACGGTCATCT 1555
Query 1557 CAAGTCATCGAACGTTGTATTGGACGAATCATTTGAGCCACTCCTAACCGATTATGCACT 1616
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1556 CAAGTCATCGAACGTTGTATTGGACGAATCATTCGAGCCTCTCTTAACCGATTATGCACT 1615
Query 1617 AAGACCAGTGATGAACTCAGAGCAGTCTCACAATCTAATGATCTCTTATAAATCACCAGA 1676
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1616 AAGACCGGTGATGAACTCAGAGCAGTCTCACAATCTAATGATCTCATATAAATCACCAGA 1675
Query 1677 GTATAGCTTAAAGGGACATCTAACTAAAAAGACAGATGTTTGGTGCCTGGGGGTATTGAT 1736
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1676 GTATAGCTTAAAGGGACATCTAACAAAAAAGACAGATGTTTGGTGCCTCGGGGTTTTGAT 1735
Query 1737 CTTGGAGCTTTTAACAGGTAGGTTTCCGGAGAATTATCTAAGCCAAGGGTACGATGCTAA 1796
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTTGGAGCTATTAACAGGTAGGTTTCCGGAGAATTATCTAAGCCAAGGGTACGATGCTAA 1795
Query 1797 CATGAGCCTCGTAACTTGGGTGAGCAACATGGTTAAGGAGAAGAAAACAGGTGACGTGTT 1856
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1796 CATGAGCCTCGTAACTTGGGTCAGCAACATGGTTAAGGAGAAGAAAACGGGTGACGTGTT 1855
Query 1857 TGACAAGGAAATGACTGGGAAGAAAAACTGCAAAGCAGAGATGCTAAACCTTTTGAAAAT 1916
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1856 TGACAAGGAAATGACTGGGAAGAAGAACTGCAAAGCAGAGATGCTAAACCTTTTGAAAAT 1915
Query 1917 CGGGTTGAGTTGTTGCgaagaagatgaagaaaggaggatggagatgagagatgctgtgga 1976
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1916 CGGGTTGAGTTGTTGCGAAGAAGATGAAGAAAGGAGGATGGAGATGAGAGATGCGGTGGA 1975
Query 1977 gaagatagagaggttaaaagaaggagagTTTGACAATGATTTCGCATCGACGACACATAA 2036
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1976 GAAGATAGAGAGGTTAAAAGAAGGAGAATTTGACAATGATTTCGCATCGACGACAAATAA 2035
Query 2037 TGTCTTTGCTTCTCGGTTGATAGACGACGATGACTTTGGTTTCGCCATGAATCGATGATG 2096
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2036 TGTCTTCGCTTCTCGGTTGATAGATGACGATGACTTTGGTTTCGCCATGAATCGATGATG 2095
Query 2097 AAACTGATCAGTCTTCTCCAGAACAATGGAAAAAGCTAAACAATTTGTAATCTTTGATGC 2156
| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||| | |
Sbjct 2096 A---TGATCAGTCTTCTTCAGAAGAATGGAAAA-GCTAAACAATTTGTAATCTTTT-T-C 2149
Query 2157 CAAATAAAAAGAAGAACTTTCTTTTTCTTCTTTGTTATGTAACTTTTTCCATTCTTATAA 2216
| | ||| || ||| | ||||||||||||||||||| |||| ||
Sbjct 2150 ----T-----G------TTTGTT---CTT-T--GTTATGTAACTTTTTCCATCCTTA-AA 2187
Query 2217 ATCATTCTCTTCGTGTAATTGTAAATCCATTTTGCAGAGTTTTGAAAATTT 2267
||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2188 -TCACTCTCTTCGTGTAATTGTAAATCCATTTTGCAGAGTTTTGAAAGTTT 2237
> Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1
Length=2305
Score = 656 bits (355), Expect = 0.0
Identities = 977/1265 (77%), Gaps = 92/1265 (7%)
Strand=Plus/Plus
Query 882 ATCTTTCTT-CA-TCATTGCAATTGTTCTGATTGTCATTGGGATAATACTGA-TGATCAT 938
|||||| || || || | ||||| || ||||||| ||||| |||||||| | |||||||
Sbjct 866 ATCTTT-TTACACTC-TAGCAATCATTTTGATTGTTATTGGCATAATACT-AGTGATCAT 922
Query 939 TTCGCTTGTGGTCTGTATCCTTCATACCAGAAGACGCAAGA-GT-TTGTCGGCTTATCCA 996
|||||||| ||| | || |||| || |||||||| || | | ||||| ||||||||
Sbjct 923 CGCGCTTGTGTTCTTTTTCGTTCAAACAAGAAGACG-AA-ATTTCTTGTCAGCTTATCCT 980
Query 997 TCCGCGGGTCAGGACAGGACAGAGAAATACAACTA-CGATCAAT-C-TACG-GACAAGGA 1052
|| || || | || |||| ||||| || || || | |||||| | | | | || |
Sbjct 981 TCAGCTGGAAAAGAAAGGATAGAGAGCTATAATTATC-ATCAATCCGCAAGCAAGAACAA 1039
Query 1053 TAAAGCTGCAGATTCTGTAACGAGTTACACTAGTAGAAGAGGAGCAGTACCGGAT-CAGA 1111
|||| | || || || || || | |||| | || |||||| || | || ||| |||
Sbjct 1040 TAAACCCGCGGAATCCGTTGTGAATCACAC-A--AGGAGAGGATCAATGCCTGATCCAGG 1096
Query 1112 ATAAACTCTTGT-TTT-TGCAAGATGACATTCAAAGATTTGACCTTCAAGATCTTCTT-A 1168
| || ||| | ||| | | ||| |||||||||||||| | |||||||||||| || |
Sbjct 1097 AGGAAGGCTTCTATTTGTACGAGACGACATTCAAAGATTCGGTCTTCAAGATCTT-TTGA 1155
Query 1169 GAGCCTCTGCTGAAGTTCTTGGGAGCGGAAGC-TTTGGCT-CTTCTTATAAAACTGGGAT 1226
|||| || |||||||||||||| || |||| | ||||| | |||| || ||| | | |||
Sbjct 1156 GAGCTTCAGCTGAAGTTCTTGGTAGTGGAA-CATTTGG-TGCTTCATACAAAGCCGCGAT 1213
Query 1227 AAATAGCGGACAGATGCTGGTCGTGAAGAGGTATAAACATATGAACAATGTTGGAAGAGA 1286
| ||| ||||| | |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1214 ATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATATGAACAATGTCGGAAGAGA 1273
Query 1287 TGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTGAAAC-ATCCGAATCTGTTGCCTA 1345
|||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||
Sbjct 1274 TGAGTTTCATGAGCATATGAGACGGTTAGGGAGATT-AAACCATCCGAATATATTGCCTC 1332
Query 1346 TTGTGGCTT-ACTATTACCGCAGAGAAGAGAAGCT-CTTGATCGCTGAGTTCATGCCAAA 1403
| || |||| ||||||||| ||| | |||||||| || ||| || | || ||||| ||
Sbjct 1333 TCGTCGCTTTACTATTACC--AGA-A-GAGAAGCTTCTA-ATCACTCAATTAATGCCTAA 1387
Query 1404 TCGTAGCTTGGCAAGCCATCTTCACGCGAATCATTCTG-TGGATCAACCGGGATTGGATT 1462
| |||||||||||| ||||||||| ||||||||||| | ||||| || |||||||
Sbjct 1388 TAGTAGCTTGGCAAACCATCTTCATGCGAATCATTCCGCTGGATT----GG-ATTGGAT- 1441
Query 1463 GGCCAACAAGGCTAAAGATTATACAAGGAGTGGCTAAGGGTTTAGGTTACTTGTTCAACG 1522
|||| | |||||||| ||| ||||||| || ||||||||| |||||||||| |||
Sbjct 1442 ----AACACGTCTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTGTTCGACG 1497
Query 1523 AGCTAACAACCCTAACAATCCCTCACGGTCATCTCAAGTCATCGAACGTTGTATTGGACG 1582
|| || |||| ||||| || ||||| |||||| | |||||||||||| |||| || ||||
Sbjct 1498 AGTTACCAACACTAACGATACCTCATGGTCATATAAAGTCATCGAACATTGTTTTAGACG 1557
Query 1583 AATCATTTGAGCCACTCCTAACCGATTATGCACTAAGACCAGTGATGAACTCAGAGCA-G 1641
|||||||||| ||| | |||| ||||| || || ||||| ||||||| ||||||||| |
Sbjct 1558 AATCATTTGAACCATTGTTAACAGATTACGCTCTTAGACCGGTGATGAGCTCAGAGCACG 1617
Query 1642 TCTCACAATCTA-ATGATCT-CTTATAAATCACCAGAGTATAG-CT-T--AAAGGGACA- 1694
| || || || |||| | | || ||||| ||||||||||| | | |||||| ||
Sbjct 1618 -CACATAA-CTTCATGA-CAGCGTACAAATCGCCAGAGTATAGACCATCGAAAGGG-CAA 1673
Query 1695 -TC-TAACTAAAAAGACAGATGTTTGGTGCCTGGGGGTATTGATCTTGGA-GCTTTTAAC 1751
|| |||| || ||||||||||||||||| | || || ||||||||||| | |||| ||
Sbjct 1674 GTCATAACGAAGAAGACAGATGTTTGGTGTTTCGGTGTGTTGATCTTGGAAG-TTTTGAC 1732
Query 1752 AGGTAGGTTTCCGGAGAATTATCT-AA-GCCAAGGGTACGATGCTAACATGAGCCTCGTA 1809
||| || || || || ||||| || || || |||| || ||| | |||||||| || ||
Sbjct 1733 AGGGAGATTCCCTGAAAATTA-CTTAACGC-AAGGTTATGATTCGAACATGAGTCTTGTG 1790
Query 1810 ACTTGGGTGAGCAACATGGTTAAGGAGAAGAAAACAGGTGACGTGTTTGACAAGGAAATG 1869
|||||||||| | | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1791 ACTTGGGTGAACGATATGGTCAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAAATG 1850
Query 1870 ACTGGGAAGAAA-AACTGCAAAGCAGAGATGCTAAACCTT-TTGAAAATCGGGTTGAGTT 1927
| || || ||| || || ||||| || ||| | || || |||||| | || ||||| |
Sbjct 1851 AAAGGAAA-AAAGAATTGTAAAGCGGAAATGATCAAT-TTGTTGAAAGTTGGTTTGAGAT 1908
Query 1928 GTTGCgaagaagatgaagaaaggaggat-ggagatgagagatgctgtggagaagatagag 1986
| ||||||||||| ||||| ||||| || ||| |||||||| | |||||||| | | |||
Sbjct 1909 GCTGCGAAGAAGAAGAAGAGAGGAG-ATTGGACATGAGAGAAGTTGTGGAGATGGTTGAG 1967
Query 1987 aggttaaaagaaggagagTTTGACA-ATGATTT-----C---G---CATCGACG-ACACA 2033
| ||| | ||||||||| | ||| | ||||||| | | |||||| | || ||
Sbjct 1968 ATGTTGAGAGAAGGAGAATCTGA-AGATGATTTTGGTTCTATGGATCATCGAGGGACTCA 2026
Query 2034 TAATG-TCT-T-TGCTTCTCG-GTTGATAGACGACGATGACTTTGGTTTCGCCATGAATC 2089
|||| | | | | |||| | |||| ||||||| ||||||||||||||| | |||||||
Sbjct 2027 TAATAATTTATATTCTTC-CATGTTGTTAGACGATGATGACTTTGGTTTCTCGATGAATC 2085
Query 2090 GATGA 2094
|||||
Sbjct 2086 GATGA 2090
Score = 411 bits (222), Expect = 2e-113
Identities = 500/631 (79%), Gaps = 31/631 (5%)
Strand=Plus/Plus
Query 205 TCAGACGCAGATTGCCTCTTGAGATTTAAAGATACTTTGGTTAATGCATCGTTCA-TTAG 263
||||| |||||||| ||||||||||| |||||||| || | |||| || | |||
Sbjct 168 TCAGATGCAGATTGTCTCTTGAGATTCAAAGATACATTAGCAAATGGTTC-AGAATTTA- 225
Query 264 C-AGTTGGGATCC-TTCCATC-TCCCCGTGT-AAGCGAAACTCAG-AGAATTGGTTCGGT 318
| ||||||||||| || | | || || ||| ||| ||||| ||| | |||||||| |||
Sbjct 226 CTAGTTGGGATCCATT--AACATCACCATGTCAAG-GAAACACAGCA-AATTGGTTTGGT 281
Query 319 GTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCGAAGGAATGGGCTTAACCGGG 378
||||| | || || | | | |||||||| |||||||||| |||||||| || || |||
Sbjct 282 GTTCT-T-TG-TAGCAATTACGTTTGGGGATTACAACTCGAGGGAATGGGTTTGACTGGG 338
Query 379 AAGCTT-GACCTTGAACCATTAGCTGCAATCAAGAATCTACGAACCTTGAGCTTCATGAA 437
|| || |||| || ||||| | | | || |||||||| |||||| | |||||||||||
Sbjct 339 AA-ATTAAACCTCGACCCATTGGTTCCTATGAAGAATCTGCGAACCATAAGCTTCATGAA 397
Query 438 CAACAAATTTAACGGTTCAATGCCATC-TGTCAAGAATTTTGGTGCGTTGAAATCATTGT 496
||| || || || || ||||||| || || |||| ||| | || ||||||| ||||
Sbjct 398 CAATAACTTCAATGGCCCAATGCC-TCAAGTTAAGAGGTTTACTTCGCTGAAATCTTTGT 456
Query 497 ACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCGGATGCGTTT-GATGGTATG-CA 554
| |||||||| ||||||||| | |||||||||||||||||||| ||| || |||||| ||
Sbjct 457 ATTTGTCTAATAACCGGTTTTCGGGGGAGATACCCGCGGATGCATTTCGA-GGTATGCCA 515
Query 555 TCATTTGAAGAAGCTTCTGTTGGCTAACAACGCGTTTCGAGGGAGTATCCCTTCTTCTTT 614
| ||||||||| || ||||||| || |||||||| ||||| | || ||||||||| |
Sbjct 516 -CTTTTGAAGAAAATTTTGTTGGCGAATAACGCGTTCCGAGGAACAATTCCTTCTTCTCT 574
Query 615 AG-CTTATTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGGAATCAGTTTCATGGGGAAA 673
| || | |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||
Sbjct 575 GGCCTCA-TTGCCAATGCTTTTAGAGTTGAGGCTAAATGGTAATCAATTTCAAGGGCAAA 633
Query 674 TACCTTATTTTAAACAAAAGGACCTTAAGTTGGCTAGCTTCGAAAACAATGACCTCGAGG 733
|||| | |||| |||||||||| ||||| | |||||||| ||||||||||| || || |
Sbjct 634 TACCATCTTTTCAACAAAAGGATCTTAAACTAGCTAGCTTTGAAAACAATGATCTTGATG 693
Query 734 GACCTATACCGGAAAGCCTTAGCAACATGGATCCTGTCTCCTTTT-CAGGGAACAA-GAA 791
|||| ||||| ||||||||| | ||||||||||| | ||| |||| |||| ||||| ||
Sbjct 694 GACCGATACCCGAAAGCCTTCGAAACATGGATCCAGGCTC-TTTTGCAGGTAACAAAGAT 752
Query 792 CTTGTGTGGTCCTCCACT-AAGCCCATGTTC 821
||||||| | |||| || ||| ||||||||
Sbjct 753 -TTGTGTGATGCTCC-CTTAAGTCCATGTTC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85550690270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5