BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20210.1
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342163 jgi|Araly1|342163|fgenesh1_pg.C_scaffold_3001926 2089 0.0
> Ahg342163 jgi|Araly1|342163|fgenesh1_pg.C_scaffold_3001926
Length=1401
Score = 2089 bits (1131), Expect = 0.0
Identities = 1308/1395 (94%), Gaps = 5/1395 (0%)
Strand=Plus/Plus
Query 63 ATGTCTAGTCCTCTTGGTCACTTTCAGATTCTTGTTTTTCTTCATGCTTTGCTTATCTTC 122
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1 ATGTCTAG---TCTTGGTCACTTTCAGATCCTTGTTTTTCTTCATGCTTTGCTTATATTC 57
Query 123 TCAGCTGAGTCCCGCAAAACCCAATTGCTGAACGATAATGATGTTGAATCTAGCGACAAG 182
|||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 58 TCAGCTGAATCTCGCAAAACCCATTTGGTGAACGATAATGATGTTGAATCTAGCGACAAG 117
Query 183 AGTGCAAAAGGCACACGATGGGCTGTTTTAGTTGCTGGATCAAATGAATATTATAACTAC 242
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 118 AGTGCAAAAGGCACGCGATGGGCTGTTTTAGTTGCTGGATCAAATGATTATTCTAACTAC 177
Query 243 AGGCATCAGGCTGACATATGCCACGCGTATCAGATACTCCGAAAAGGCGGTTTAAAAGAT 302
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 178 AGGCATCAGGCTGATATATGCCATGCGTATCAGATACTCCGAAAAGGCGGTCTAAAAGAT 237
Query 303 GAAAACATCATTGTGTTTATGTATGATGATATCGCGTTTTCCTCGGAGAATCCTAGGCCT 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAAACATCATTGTCTTTATGTATGATGATATCGCGTTTTCCTCGGAGAATCCTAGGCCT 297
Query 363 GGAGTTATCATTAATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTAC 422
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGAGTTATCATCAATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTAC 357
Query 423 ACTAAAGAAGCTGTTAATGTTCAAAACTTCTACAATGTGTTACTTGGAAATGAAAGTGGC 482
||| ||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 358 ACTGAAGAAACTGTTAATGTTGAAAACTTCTATAATGTGCTACTTGGAAATGAAAGTGGT 417
Query 483 GTCACAGGAGGAAATGGCAAAGTTGTGAAAAGTGGTCCTAATGATAATATCTTCATCTAT 542
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 GTCACAGGAGGAAGTGGCAAAGTTGTGAAAAGTGGTCCTAATGATAACATCTTCATCTAC 477
Query 543 TATGCTGACCATGGAGCTCCTGGCTTAATAGCGATGCCCACTGGTGATGAAGTTATGGCA 602
|||||||| |||||||||||||||||| |||||||||||||||||||||| || | |||
Sbjct 478 TATGCTGATCATGGAGCTCCTGGCTTACTAGCGATGCCCACTGGTGATGAGGTCCTTGCA 537
Query 603 AAAGATTTCAATGAAGTCTTGGAGAAGATGCATAAGAGaaaaaaaTACAACAAGATGGTG 662
|||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 538 AAAGATTTTAATAAAGTCTTGGAGAAGATGCATAAGCGAAAAAGCTACAACAAGATGGTG 597
Query 663 ATCTATGTTGAAGCATGTGAATCAGGAAGTATGTTTGAAGGGATTTTAAAGAAAAATCTC 722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 ATCTATGTTGAAGCATGTGAATCTGGAAGTATGTTTGAAGGGATTTTAAAGAAAAATCTC 657
Query 723 AACATATACGCAGTGACTGCTGCTAATTCTAAAGAGAGCAGCTGGGGAGTTTACTGTCCT 782
|| |||||||||||||||||||||||||| ||||||| ||||| ||| |||||| |||
Sbjct 658 AATATATACGCAGTGACTGCTGCTAATTCGAAAGAGAACAGCTTTGGAACTTACTGCCCT 717
Query 783 GAGTCATATCCTCCTCCTCCTTCTGAGATTGGAACTTGTCTCGGCGATACATTTAGCATC 842
||||| ||| ||||| || || ||||| ||| |||||||||||||||| ||||||||||
Sbjct 718 GAGTCGTATACTCCTTCTGCTCCTGAGTTTGAAACTTGTCTCGGCGATGTATTTAGCATC 777
Query 843 TCTTGGCTTGAGGACAGTGACCTTCATGACATGAGCAAAGAGACTTTGGAGCAACAATAC 902
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 778 TCTTGGCTTGAGGACAGTGACCTTCATGACATGAGCAAGGAGACTTTGAAGCAGCAATAT 837
Query 903 CACGTTGTAAAGAGAAGAGTAGGATCTGATGTACCAGAGACTTCTCATGTATGCCGTTTC 962
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 838 CACGTTGTAAAGAGAAGAGTAGGATCTGATGTAGAACAGACTTCTCATGTATGCCGTTTC 897
Query 963 -GGAACAGAGAAGATGCTTAAAGATTATCTTTCCTCTTACATTGGAAGAAATCCTGAAAA 1021
||| || || |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 898 GGGACCA-AGGAGATGCTTAATGATTATCTTGCCTCTTACATTGGAAGAAATCCTGAAAA 956
Query 1022 CGATAACTTCACTTTCACGGAATCCTTTTCCTCACCAATCTCTAATTCTGGCTTGGTCAA 1081
||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 957 CGAAAACTTCACTTTCACTGAATCCATTTCCTCACCAATCTCTAATTCTGGCTTGGTCAA 1016
Query 1082 TCCGCGCGATATTCCTCTGCTATACCTCCAGAGAAAGATTCAAAAAGCTCCAATGGGATC 1141
|||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 1017 TCCGCGCGATATCCCTCTGTTATATCTCCAGAGAAAGATTCAAAAAGCTCCAGTGGGATC 1076
Query 1142 ACTTGAAAGCAAAGAAGCTCAGAAGAAATTGCTTGACGAAAAGAATCATAGGAAACAAAT 1201
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1077 ACCTGAAAGCAAAGAAGCTCAGAAGAAATTGTTTGACGAAATGAATCATAGGAAACAAAT 1136
Query 1202 CGATCAGAGCATTACAGACATTCTGCGGCTTTCAGTTAAACAAACCAATGTCTTAAATCT 1261
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1137 CGATCAGAGCATTACAGAGATTCTGCGACTTTCGGTTAAACAAACCAATGTCTTAAATCT 1196
Query 1262 CTTAACTTCCACAAGAACAACAGGACAGCCTCTTGTAGACGATTGGGATTGCTTCAAGAC 1321
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1197 CCTAACTTCCACAAGAACAACAGGACAGCCTCTAGTAGACGATTGGGATTGTTTCAAGAC 1256
Query 1322 TCTAGTTAATAGCTTCAAGAATCACTGCGGTGCAACGGTGCATTACGGATTGAAGTATAC 1381
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1257 TCTGGTTAATAGCTTCAAGAATCACTGCGGTGCAACAGTGAATTACGGATTGAAGTATAC 1316
Query 1382 AGGAGCGCTTGCCAATATCTGCAATATGGGAGTGGATGTGAAGCAAACTGTTTCAGCCAT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGGAGCGCTTGCCAATATCTGCAATATGGGAGTGGATGTGAAGCAAACTGTTTCAGCCAT 1376
Query 1442 TGAACAAGCTTGTTC 1456
|||||||||||||||
Sbjct 1377 TGAACAAGCTTGTTC 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63039355475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5