BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20220.1
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479541 jgi|Araly1|479541|fgenesh2_kg.3__2242__AT3G20220.1 1022 0.0
> Ahg479541 jgi|Araly1|479541|fgenesh2_kg.3__2242__AT3G20220.1
Length=609
Score = 1022 bits (553), Expect = 0.0
Identities = 592/610 (97%), Gaps = 5/610 (1%)
Strand=Plus/Plus
Query 6 AAAATAAGAAACAAGAACAACTAGGGTTT-GATTAACCTAGCTTGTTTTTTA-TTTAAAG 63
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| | |
Sbjct 3 AAAATAAGAAACAAGAACAACTAGGGTTTCG-TTAACCTAGCTTGTTTTTTATTTTTATG 61
Query 64 TTCTATGAAGATAACAACTTTCATCATAAGATCTTTATCGTTGTTATCTATGATCTATCA 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 62 TTCTATGAAGATAACAACTTTCATCATAAGATCTTTATCATTGTTATCTATGATCTATCA 121
Query 124 AATGCAAAGTCTTTTGACATTGATAGATATATAAATGATTCCTTTTGAACTTTTCTCAAG 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 AATGCAAAGTCTTTTGACATTGATAGATATATAAATGATACCTTTTGAACTTTTCTCAAG 181
Query 184 ACACCATTCCGCTTGAtttttttGATATCTTTCTTTCTATTCAACAAAAATGATTTCGCT 243
||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 182 ACACCATTCCGTTTGA-TTTTTTGCTATCTTTCTTTCTATTCAAC-AAAATGATTTCGCT 239
Query 244 AAGTTTCATCGTGCGTCTAGCAAACCAGGAGAACAGACGAAACAGAAGGTACGAAACTAA 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGTTTCATCGTTCGTCTAGCAAACCAGGAGAACAGACGAAACAGAAGGTACGAAACTAA 299
Query 304 CATTAAGGATCGTCTTGTCTCGGGGGAGTTATCGGACGGTAGCAGACCAGCCAGAGATCA 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATTAAGGATCGTCTTATCTCGGGGGAGTTATCGGACGGTAGCAGACCAGCCAGAGATCA 359
Query 364 AAACGGTGTCCCGAGAGGACATCTTGCGGTCTATGTGGGGCGCGAAGAGAGGCAAAGGTT 423
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 AAACGATGTCCCGAGAGGGCATCTTGCGGTCTATGTGGGACGCGAAGAGAGGCAAAGGTT 419
Query 424 TGTGATACCGACCAAGTATCTTCAATATCCTGAATTTAGGAGTTTGATGGATGAAGTAGC 483
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TGTGATACCGACCAAGTATCTTCAATATCCTGAATTTAGGACTTTGATGGATGAAGTAGC 479
Query 484 GGACGAGTTTGGGTACGATCATGAAGGAGGGATTCATATTCCTTGTGAAGAAAGTGTTTT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGACGAGTTTGGGTACGATCATGAAGGAGGGATTCATATTCCTTGTGAAGAAAGTGTTTT 539
Query 544 TGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAAATAAGTGTACATACAATA 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAAATAATTGTACATACAATA 599
Query 604 CAAATATATA 613
||||||||||
Sbjct 600 CAAATATATA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23026241868
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5