BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20230.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929946 jgi|Araly1|929946|scaffold_302403.1 874 0.0
Ahg479541 jgi|Araly1|479541|fgenesh2_kg.3__2242__AT3G20220.1 158 9e-38
> Ahg929946 jgi|Araly1|929946|scaffold_302403.1
Length=606
Score = 874 bits (473), Expect = 0.0
Identities = 568/613 (93%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 60 ACTCTTCAAGCTCGACGAAGATGTCTTGCTTGATTTCATCAACTTGCTCACTCGTCCCCT 119
|||||| |||||||||||| |||||||||||| | |||||||| ||||| ||||||||||
Sbjct 1 ACTCTTGAAGCTCGACGAACATGTCTTGCTTGGTCTCATCAACGTGCTCCCTCGTCCCCT 60
Query 120 TCGACTCGAATCTGACTCGTTCGAA-TCGTTTCACCAAACTGGGTTCTG-CAGTTTCATG 177
|||||||||| || |||| || || |||||| || |||||||| || | || |||||||
Sbjct 61 TCGACTCGAACCTTTCTCGGTC-AAGTCGTTTAACGAAACTGGGCTC-GTCAATTTCATG 118
Query 178 GCAATCTTCCTTTCCTAAACTCTCCATCGAAATCGGCTCTGTTATCTCATCCCCCATTGT 237
||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 119 GCAATCTTCATTTCCCAAACTCTCCGTCGAAATCGGCTCTGTTATCTCATCTCCCATTGT 178
Query 238 CAAGAAGGATTCTTTTGTGCAAGCTGCGTGGACTCGAAGATCACGAGGTGAAGCAGCGAA 297
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 CAAAAAGGATTCTTTTGTGCAAGCTGCGTGGACTCGAAGATCACGTGGTGAAGCAGCGAA 238
Query 298 AAGACCCAACAGGAAGTCATGGAAACAGAGAACGGACATGTACATGAGGCCTTTCCT-TC 356
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 239 AAGACCCAACAGGAAGTCATGGAAACAGAGAACAGACATGTACATGAGGCCTTTCCTGT- 297
Query 357 TGAATGTGTTCTTCTCCAGGAAATTCATACACGCTAAAGTGATGCATAGGCCAACAAGCA 416
| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 298 TCAATGTTTTCTTCTCCAGGAAGTTCATACACGCCAAAGTGATGCATAGGCCAACAAGCA 357
Query 417 AAGTCATTTCAGTTGCCACCACAAATGCTAGAGATATAAGGACTAATATACCGTCTCTTG 476
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 AAGTCATTTCGGTTGCCACCACAAATGCAAGAGATATAAGGACTAATATACCGTCTCTTG 417
Query 477 TTGATAACGAAGCGTGTAGACTCATCGGTAAGCTCATAGCTGAGCGTTCAATGGAAGCAG 536
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 418 TCGATAACGAAGCGTGTAGACTCATCGGTAAGCTCATTGCTGAGCGTTCGATGGAAGCAG 477
Query 537 ACGTCTATGCTGTCTCTTATGAGCCAAGAAAGGGAGAAAGAATTGAAGGGAAGCTAGGGA 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACGTCTATGCTGTGTCTTATGAGCCAAGAAAGGGAGAAAGAATTGAAGGGAAGCTAGGGA 537
Query 597 TTGTAATCGATACTATTAAGGAACATGGCATTATTTTTGTTCCTTGATTCATTCTCTCTT 656
||||||||||||| || |||||||| ||||||||||||||||||||||||| |||| |
Sbjct 538 TTGTAATCGATACGATCAAGGAACAAGGCATTATTTTTGTTCCTTGATTCA--CTCT-T- 593
Query 657 AGAATAAATGACT 669
|||| ||||||||
Sbjct 594 AGAACAAATGACT 606
> Ahg479541 jgi|Araly1|479541|fgenesh2_kg.3__2242__AT3G20220.1
Length=609
Score = 158 bits (85), Expect = 9e-38
Identities = 87/88 (99%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 842 TATATATTTGTATTGTATGTACACTTATTTCTTCTTGTCACAAGACATGTATCTAATCAA 901
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 609 TATATATTTGTATTGTATGTACAATTATTTCTTCTTGTCACAAGACATGTATCTAATCAA 550
Query 902 AATCTCTTCAAAAACACTTTCTTCACAA 929
||||||||||||||||||||||||||||
Sbjct 549 AATCTCTTCAAAAACACTTTCTTCACAA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5