BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20240.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479543 jgi|Araly1|479543|fgenesh2_kg.3__2244__AT3G20240.1 2093 0.0
> Ahg479543 jgi|Araly1|479543|fgenesh2_kg.3__2244__AT3G20240.1
Length=1367
Score = 2093 bits (1133), Expect = 0.0
Identities = 1310/1389 (94%), Gaps = 37/1389 (3%)
Strand=Plus/Plus
Query 1 TAAATTATTAGTTTATACTCTTCTAGGTCTCTCTGTTCACAATCTGATGGAAgtttgttt 60
||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 TAAATTATTAGTTTATACTCTTCTAGG----TCTGTTCACAATC---------TTTGTTT 47
Query 61 ttttctttgttttctaattatgttttaattgaata-------ttctctgttgcccttttt 113
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 48 TTTT-TTTGTTTTCTAATTATG-TTTAATTGAATATTCTTTCTTCTCTGTTGCCCTTTTT 105
Query 114 tgaatctctTGTTCTGTCTCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 173
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TGAATCTCCTGTTCTG--TCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 163
Query 174 GAGAGAAAATGGCAATGGTTGTTCCAAAAGAAGGGCTTGTGGTTATGGACAAGGAATCTG 233
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 164 --GAGAAAATGGCAATGGTTGTTCCAAAAGAAGGTCTTGTGGTTATGGACAAGGAATCTC 221
Query 234 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACTA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 222 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACGA 281
Query 294 TTCCTGTTAAAGATTTCTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 353
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTCCTGTTAAAGATTTTTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 341
Query 354 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAGACTATAAGGACAAGAATGATTG 413
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 342 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAAACTATAAGGACAAGAATGATTG 401
Query 414 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 461
Query 474 GGCAAGGTCTTTGGGCTGGCAATGAAATCAATATGATTCGAATCATTCCAACGCAAGCAA 533
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 462 GGCAAGGTCTTTGGGCTGGCAACGAAATCAATATGATTCGAATCATTCCAACTCAAGCAA 521
Query 534 TTGAGTTAGGGACATTCGAGTGGGTAAAACGTGCAATGACATCAGCTCAAGTGAAGTTGA 593
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 522 TTGAGTTAGGGACATTTGAATGGGTAAAACGCGCAATGACATCAGCTCAAGTGAAGTTGA 581
Query 594 AGAAGATTGAGGACGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCGTCCATATCGT 653
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 582 AGAAGATTGAAGATGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCCTCCATATCAT 641
Query 654 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCTGGTATTGCCAGTACACTTGTTTGCC 713
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 642 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCAGGTATTGCTAGTACGCTTGTTTGCC 701
Query 714 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGAGATTTATCCAAGCTTAA 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 702 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGATATTTATCCAAGCTTAA 761
Query 774 GCCTTGCAATTCCAAGAATTTTTAGAGCCGATGGAATCCGTGGATTTTACGCTGGCTTAG 833
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 762 GCCTTGCAATTCCAAGGATTTTCAGAGACGATGGAATCCGTGGATTTTACGCTGGCTTAG 821
Query 834 GACCAACATTGGTCGGGATGCTTCCTTACAGCACATGTTATTACTTCATGTATGACAAAA 893
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 822 GACCAACACTGGTCGGGATGCTTCCATACAGCACATGTTATTACTTCATGTATGACAAAA 881
Query 894 TGAAGACCTCATACTGCAAATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TGAAGACCTCATACTGCAGATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 941
Query 954 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGCACCATAAGCTTCCCCTTGGAAGTAGCGC 1013
||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 942 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGTACCATAAGCTTTCCGTTGGAAGTCGCGC 1001
Query 1014 GGAAGCGGTTGATGGTTGGAGCTCTGAAGGGAG-AATGCCCACCAAACATGGCTGCAGCA 1072
| ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1002 GAAAGCGGTTGATGGTTGGAGCTCTGAAGGG-GCAATGCCCACCGAACATGGCTGCAGCA 1060
Query 1073 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1120
Query 1133 TGTTTGAAAGTCATGCCATCTTCAGGCATTACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1192
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1121 TGTTTGAAAGTCATGCCGTCTTCAGGCATCACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1180
Query 1193 ATTTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1252
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 ATCTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1240
Query 1253 TATTGTTTCTTTAAAGCTAAAGCCTGTCATCACATTTCTAAGTTATGATTTAGGGAATGT 1312
|||||| ||| |||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 1241 CATTGTTACTT-AAAGCTAA-GCCTCTCATCACATTTCAAAGTTATGATTTAGGGAATGT 1298
Query 1313 GGTGGCTTGGA----C---ATGAGATGtttttttGGCACCTGGGAGTGTTATGATTCCCA 1365
|||||||||| | |||||||||||||||||||| |||||||||| || ||||||
Sbjct 1299 GGTGGCTTGGTTTTTCCCCATGAGATGTTTTTTTGGCACTTGGGAGTGTTTTGGTTCCCA 1358
Query 1366 TGAGAAGTA 1374
|||||||||
Sbjct 1359 TGAGAAGTA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5