BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20240.1 Length=1403 Score E Sequences producing significant alignments: (Bits) Value Ahg479543 jgi|Araly1|479543|fgenesh2_kg.3__2244__AT3G20240.1 2093 0.0 > Ahg479543 jgi|Araly1|479543|fgenesh2_kg.3__2244__AT3G20240.1 Length=1367 Score = 2093 bits (1133), Expect = 0.0 Identities = 1310/1389 (94%), Gaps = 37/1389 (3%) Strand=Plus/Plus Query 1 TAAATTATTAGTTTATACTCTTCTAGGTCTCTCTGTTCACAATCTGATGGAAgtttgttt 60 ||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1 TAAATTATTAGTTTATACTCTTCTAGG----TCTGTTCACAATC---------TTTGTTT 47 Query 61 ttttctttgttttctaattatgttttaattgaata-------ttctctgttgcccttttt 113 |||| ||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 48 TTTT-TTTGTTTTCTAATTATG-TTTAATTGAATATTCTTTCTTCTCTGTTGCCCTTTTT 105 Query 114 tgaatctctTGTTCTGTCTCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 173 |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 106 TGAATCTCCTGTTCTG--TCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 163 Query 174 GAGAGAAAATGGCAATGGTTGTTCCAAAAGAAGGGCTTGTGGTTATGGACAAGGAATCTG 233 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 164 --GAGAAAATGGCAATGGTTGTTCCAAAAGAAGGTCTTGTGGTTATGGACAAGGAATCTC 221 Query 234 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACTA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 222 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACGA 281 Query 294 TTCCTGTTAAAGATTTCTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 353 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TTCCTGTTAAAGATTTTTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 341 Query 354 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAGACTATAAGGACAAGAATGATTG 413 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 342 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAAACTATAAGGACAAGAATGATTG 401 Query 414 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 461 Query 474 GGCAAGGTCTTTGGGCTGGCAATGAAATCAATATGATTCGAATCATTCCAACGCAAGCAA 533 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 462 GGCAAGGTCTTTGGGCTGGCAACGAAATCAATATGATTCGAATCATTCCAACTCAAGCAA 521 Query 534 TTGAGTTAGGGACATTCGAGTGGGTAAAACGTGCAATGACATCAGCTCAAGTGAAGTTGA 593 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 522 TTGAGTTAGGGACATTTGAATGGGTAAAACGCGCAATGACATCAGCTCAAGTGAAGTTGA 581 Query 594 AGAAGATTGAGGACGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCGTCCATATCGT 653 |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 582 AGAAGATTGAAGATGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCCTCCATATCAT 641 Query 654 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCTGGTATTGCCAGTACACTTGTTTGCC 713 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 642 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCAGGTATTGCTAGTACGCTTGTTTGCC 701 Query 714 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGAGATTTATCCAAGCTTAA 773 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 702 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGATATTTATCCAAGCTTAA 761 Query 774 GCCTTGCAATTCCAAGAATTTTTAGAGCCGATGGAATCCGTGGATTTTACGCTGGCTTAG 833 |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| Sbjct 762 GCCTTGCAATTCCAAGGATTTTCAGAGACGATGGAATCCGTGGATTTTACGCTGGCTTAG 821 Query 834 GACCAACATTGGTCGGGATGCTTCCTTACAGCACATGTTATTACTTCATGTATGACAAAA 893 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 822 GACCAACACTGGTCGGGATGCTTCCATACAGCACATGTTATTACTTCATGTATGACAAAA 881 Query 894 TGAAGACCTCATACTGCAAATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 953 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TGAAGACCTCATACTGCAGATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 941 Query 954 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGCACCATAAGCTTCCCCTTGGAAGTAGCGC 1013 ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| Sbjct 942 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGTACCATAAGCTTTCCGTTGGAAGTCGCGC 1001 Query 1014 GGAAGCGGTTGATGGTTGGAGCTCTGAAGGGAG-AATGCCCACCAAACATGGCTGCAGCA 1072 | ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 1002 GAAAGCGGTTGATGGTTGGAGCTCTGAAGGG-GCAATGCCCACCGAACATGGCTGCAGCA 1060 Query 1073 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1061 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1120 Query 1133 TGTTTGAAAGTCATGCCATCTTCAGGCATTACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1192 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1121 TGTTTGAAAGTCATGCCGTCTTCAGGCATCACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1180 Query 1193 ATTTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1252 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1181 ATCTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1240 Query 1253 TATTGTTTCTTTAAAGCTAAAGCCTGTCATCACATTTCTAAGTTATGATTTAGGGAATGT 1312 |||||| ||| |||||||| |||| |||||||||||| ||||||||||||||||||||| Sbjct 1241 CATTGTTACTT-AAAGCTAA-GCCTCTCATCACATTTCAAAGTTATGATTTAGGGAATGT 1298 Query 1313 GGTGGCTTGGA----C---ATGAGATGtttttttGGCACCTGGGAGTGTTATGATTCCCA 1365 |||||||||| | |||||||||||||||||||| |||||||||| || |||||| Sbjct 1299 GGTGGCTTGGTTTTTCCCCATGAGATGTTTTTTTGGCACTTGGGAGTGTTTTGGTTCCCA 1358 Query 1366 TGAGAAGTA 1374 ||||||||| Sbjct 1359 TGAGAAGTA 1367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52450267365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5